Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 2.6e-135 485.3 238 100.0
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 4.8e-73 278.5 243 62.1
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 8.0e-68 261.2 242 59.5
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 7.0e-64 248.1 242 55.4
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 3.1e-59 232.6 240 55.0
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.9e-59 231.1 241 54.4
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 8.9e-59 231.1 241 53.1
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.3e-57 227.3 238 57.1
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 2.2e-57 226.5 245 53.5
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.1e-56 224.2 241 53.1
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.4e-56 223.0 246 54.1
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 3.2e-56 222.6 241 53.1
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 9.2e-56 221.1 243 52.7
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 7.8e-55 218.0 238 52.5
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.7e-54 216.9 243 53.1
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.8e-52 209.5 241 50.2
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.6e-52 209.1 240 49.6
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 6.2e-52 208.4 244 51.6
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.8e-51 206.8 242 51.2
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.4e-50 202.2 244 50.8
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.3e-49 200.7 243 51.0
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.7e-49 200.3 243 49.0
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.9e-49 199.5 244 50.0
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.9e-49 199.5 244 48.8
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.9e-49 199.5 240 48.8
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 3.7e-49 199.1 259 45.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 6.4e-49 198.4 212 56.1
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.2e-47 194.1 259 44.4
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.1e-47 193.4 253 47.0
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.3e-46 190.7 253 44.7
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.7e-46 190.3 249 46.2
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 6.6e-46 188.3 250 45.6
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 2.5e-45 186.4 240 46.2
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 7.3e-45 184.9 245 48.2
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 9.5e-45 184.5 238 47.5
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 6.8e-43 178.3 245 45.7
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 6.8e-43 178.3 251 45.8
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.2e-42 177.6 244 45.9
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.5e-42 177.2 241 45.6
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.5e-42 177.2 240 45.4
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.6e-42 176.4 234 45.7
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 5.8e-42 175.3 217 51.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 7.5e-42 174.9 242 45.0
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.7e-41 173.7 245 45.7
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 2.9e-41 172.9 240 47.9
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 8.3e-41 171.4 246 43.9
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 8.3e-41 171.4 241 46.5
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 8.3e-41 171.4 265 46.4
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.1e-40 171.0 237 46.8
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 1.9e-40 170.2 245 44.1
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.9e-40 170.2 241 46.1
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 2.4e-40 169.9 241 46.1
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 9.2e-40 167.9 239 45.6
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.2e-39 167.5 219 47.0
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.1e-39 166.8 242 41.3
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 2.7e-39 166.4 252 43.7
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 6.0e-39 165.2 258 43.8
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.0e-38 164.5 241 46.1
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.0e-38 162.9 246 40.2
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 8.6e-38 161.4 234 43.6
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.5e-37 160.6 238 45.0
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.9e-37 160.2 247 44.5
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.2e-36 157.5 236 43.2
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 3.6e-36 156.0 220 45.5
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.4e-35 154.1 263 44.1
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 3.1e-35 152.9 243 42.0
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 4.0e-35 152.5 220 46.8
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 5.2e-35 152.1 265 43.0
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 5.2e-35 152.1 250 40.8
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 5.8e-34 148.7 235 42.1
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 3.8e-33 146.0 255 41.2
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 3.8e-33 146.0 231 41.1
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 8.4e-33 144.8 260 40.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.1e-32 144.4 238 37.4
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.4e-32 144.1 261 41.0
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.4e-32 143.3 247 43.3
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 9.2e-32 141.4 245 38.8
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.6e-31 140.6 241 41.1
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 2.7e-31 139.8 241 40.2
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 6.0e-31 138.7 241 40.2
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 6.0e-31 138.7 241 40.2
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 6.0e-31 138.7 242 37.6
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 3.9e-30 136.0 257 38.5
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 1.1e-29 134.4 244 39.8
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 7.3e-29 131.7 246 37.4
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 2.1e-28 130.2 257 38.5
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 4.7e-28 129.0 248 40.7
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 8.1e-28 128.3 256 37.5
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 2.4e-27 126.7 244 38.9
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 9.9e-26 121.3 249 41.0
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 1.3e-25 120.9 243 41.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 2.9e-25 119.8 251 38.2
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 4.9e-25 119.0 251 38.2
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 6.4e-25 118.6 235 37.9
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.4e-24 117.5 246 37.4
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.4e-24 117.5 248 37.9
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.2e-23 114.4 246 36.2
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 1.2e-23 114.4 259 35.1
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.6e-23 114.0 238 36.6
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-23 113.6 128 48.4
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 6.0e-23 112.1 203 41.4
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 1.0e-22 111.3 126 47.6
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 1.3e-22 110.9 240 37.1
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.3e-22 110.9 245 38.4
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 8.7e-22 108.2 121 47.9
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-21 107.1 121 47.9
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 3.3e-21 106.3 128 46.9
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 5.6e-21 105.5 243 38.3
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 5.6e-21 105.5 242 33.9
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 7.3e-21 105.1 243 37.4
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 6.2e-20 102.1 234 35.5
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 8.1e-20 101.7 256 38.3
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.4e-19 100.9 234 35.0
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 5.3e-19 99.0 253 36.8
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 9.0e-19 98.2 238 32.8
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.5e-18 97.4 110 48.2
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 4.5e-18 95.9 235 33.6
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 9.9e-18 94.7 236 35.2
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 3.8e-17 92.8 249 31.3
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-16 91.3 90 51.1
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.4e-16 90.9 238 31.5
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 1.4e-16 90.9 237 30.4
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 3.2e-16 89.7 237 33.8
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 4.2e-16 89.4 234 35.5
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 7.1e-16 88.6 246 31.7
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 7.1e-16 88.6 239 33.5
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 2.7e-15 86.7 253 30.0
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 2.7e-15 86.7 243 32.1
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 2.7e-15 86.7 111 48.6
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 6.0e-15 85.5 242 30.6
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 6.0e-15 85.5 242 30.6
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 6.0e-15 85.5 242 30.6
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 7.9e-15 85.1 172 33.1
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.9e-14 82.8 211 31.8
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 5.1e-14 82.4 211 31.8
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.1e-13 81.3 211 30.3
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 2.5e-13 80.1 143 44.1
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 7.4e-13 78.6 170 32.4
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 6.2e-12 75.5 87 44.8
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 1.8e-11 73.9 89 43.8
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 2.4e-11 73.6 248 29.8
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 3.1e-11 73.2 234 29.1
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 1.2e-10 71.2 242 31.8
Peaxi162Scf47975g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 2.6e-10 70.1 105 41.9
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 3.4e-10 69.7 143 37.1
Peaxi162Scf00075g00074 Petunia axillaris HOM05D005081 ORTHO05D005506 1.0e-09 68.2 96 45.8
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 2.9e-09 66.6 232 27.6
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.7e-07 60.1 119 41.2


User provided reference genes

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