Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 3.5e-183 644.8 328 100.0
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.1e-143 512.7 325 79.1
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 6.3e-140 501.1 321 78.8
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 5.0e-137 491.5 349 74.5
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 9.5e-136 487.3 328 76.5
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 9.2e-131 470.7 324 73.1
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.6e-130 468.4 316 73.4
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 5.9e-130 468.0 315 73.7
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 1.7e-129 466.5 316 73.4
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 6.6e-129 464.5 325 73.2
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 1.9e-128 463.0 325 72.9
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 1.9e-128 463.0 321 74.5
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 9.5e-128 460.7 325 72.3
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 4.7e-127 458.4 325 71.7
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 6.8e-126 454.5 326 73.9
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 4.9e-124 448.4 321 71.0
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 6.4e-124 448.0 324 71.6
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 2.4e-123 446.0 314 72.0
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 6.0e-122 441.4 291 75.9
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 3.9e-121 438.7 324 68.2
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 5.0e-121 438.3 315 70.2
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 2.5e-120 436.0 329 65.7
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.1e-118 430.6 370 62.7
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 2.3e-118 429.5 325 65.5
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.5e-117 426.8 324 65.4
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 2.6e-117 426.0 323 67.5
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 3.4e-117 425.6 320 66.6
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 9.8e-117 424.1 321 66.4
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 2.2e-116 422.9 312 67.9
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 6.4e-116 421.4 321 65.1
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 8.3e-116 421.0 336 63.4
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 1.9e-115 419.9 324 66.0
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 6.0e-114 414.8 322 64.9
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 3.9e-113 412.1 316 66.1
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 3.9e-113 412.1 327 64.8
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 3.3e-112 409.1 316 63.9
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 4.3e-112 408.7 322 63.7
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 8.1e-111 404.4 324 63.6
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 8.1e-111 404.4 320 63.4
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 4.0e-110 402.1 316 63.9
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 1.5e-109 400.2 329 63.2
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 4.4e-109 398.7 288 70.1
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 1.7e-108 396.7 323 61.6
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 1.4e-107 393.7 326 61.0
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.9e-107 393.3 323 61.9
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 2.4e-107 392.9 329 61.1
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 4.1e-107 392.1 325 64.0
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 9.2e-107 391.0 323 61.9
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 2.1e-106 389.8 319 64.9
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.7e-106 389.4 323 61.6
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 6.0e-106 388.3 326 61.3
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 7.8e-106 387.9 327 62.7
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 5.1e-105 385.2 326 61.0
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 5.1e-105 385.2 318 63.5
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 3.3e-104 382.5 330 60.0
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 5.6e-104 381.7 282 68.4
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 2.8e-103 379.4 325 60.3
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 6.2e-103 378.3 365 57.3
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 6.2e-103 378.3 325 60.6
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 1.1e-102 377.5 327 60.2
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.8e-102 376.7 329 62.0
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 6.8e-102 374.8 326 60.4
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 2.2e-100 369.8 328 60.4
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 8.4e-100 367.9 320 58.4
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.4e-99 367.1 232 73.3
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 9.3e-99 364.4 316 58.2
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 6.0e-98 361.7 318 56.6
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 6.0e-98 361.7 323 58.8
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 1.3e-97 360.5 330 57.9
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.1e-97 358.6 285 64.9
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 1.1e-96 357.5 317 55.8
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 7.3e-96 354.8 318 56.0
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 1.6e-95 353.6 319 55.8
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 1.6e-95 353.6 318 55.3
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 2.8e-95 352.8 318 55.0
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 4.8e-95 352.1 318 55.3
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 1.4e-94 350.5 314 56.1
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.9e-94 348.2 323 58.2
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 9.0e-94 347.8 276 65.2
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 1.5e-93 347.1 319 54.5
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.5e-93 347.1 317 54.6
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 2.6e-93 346.3 318 55.3
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 5.8e-93 345.1 318 53.8
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 5.8e-93 345.1 320 58.1
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.3e-92 344.0 319 54.9
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.4e-91 340.5 318 57.9
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 4.2e-91 339.0 318 56.3
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 1.2e-90 337.4 317 54.9
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 3.9e-89 332.4 347 53.3
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 3.9e-89 332.4 269 60.6
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 5.1e-89 332.0 318 52.2
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.5e-88 330.5 319 52.7
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 5.6e-88 328.6 316 54.7
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 4.8e-87 325.5 322 56.8
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 3.1e-86 322.8 333 52.3
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 5.3e-86 322.0 328 52.4
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 1.5e-85 320.5 317 53.3
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 2.6e-85 319.7 329 52.9
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 7.6e-85 318.2 326 52.1
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 9.9e-85 317.8 317 52.7
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 9.3e-83 311.2 317 53.0
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 7.9e-82 308.1 327 54.1
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 1.3e-81 307.4 318 49.1
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 1.3e-81 307.4 318 49.1
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 1.3e-81 307.4 317 55.2
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 1.3e-81 307.4 312 53.2
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 3.9e-81 305.8 310 49.7
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 3.9e-81 305.8 310 49.7
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 7.4e-80 301.6 223 72.6
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 2.8e-79 299.7 328 50.9
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.1e-78 297.7 317 52.1
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 4.0e-78 295.8 327 48.6
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 6.9e-78 295.0 316 51.6
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 1.5e-77 293.9 322 48.1
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 4.5e-77 292.4 325 48.0
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 2.2e-76 290.0 319 49.8
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 4.9e-76 288.9 314 51.6
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 4.9e-76 288.9 322 48.1
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 4.9e-76 288.9 315 51.1
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.1e-75 287.7 325 48.6
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 9.3e-75 284.6 324 46.9
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 2.7e-74 283.1 186 69.9
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 7.4e-72 275.0 331 45.6
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 6.3e-71 271.9 324 50.0
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 6.9e-70 268.5 281 54.1
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 6.7e-65 251.9 324 44.1
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.5e-64 250.0 325 46.5
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 6.3e-63 245.4 307 47.6
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 5.3e-62 242.3 205 56.1
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 5.1e-57 225.7 275 53.8
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 3.3e-56 223.0 294 47.3
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 7.7e-53 211.8 314 39.2
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.3e-52 211.1 324 38.3
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.7e-52 210.7 137 70.1
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 1.9e-51 207.2 206 51.0
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 9.4e-51 204.9 322 37.6
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 2.7e-50 203.4 182 54.4
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 2.2e-44 183.7 317 35.0
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.1e-38 164.9 324 36.1
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 1.3e-36 157.9 115 65.2
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 8.0e-34 148.7 113 66.4
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 1.2e-29 134.8 224 39.7
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 5.0e-28 129.4 157 45.2
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 1.5e-24 117.9 118 60.2
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.6e-24 117.1 169 45.0
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 2.8e-23 113.6 117 60.7
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.4e-22 110.5 79 67.1
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 3.5e-21 106.7 238 34.0
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-18 98.2 188 32.4
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.2e-18 98.2 110 58.2
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.0e-17 93.6 117 50.4
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 5.7e-16 89.4 115 49.6
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 2.0e-13 80.9 209 31.1
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.6e-12 75.5 52 63.5
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 5.6e-11 72.8 228 28.9
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 8.0e-10 68.9 172 30.8
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 4.0e-09 66.6 308 24.7
MELO3C029108.2 Cucumis melo HOM05D004681 ORTHO05D005541 1.3e-07 61.6 46 54.3


User provided reference genes

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