Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 8.8e-72 273.5 135 100.0
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 7.8e-60 233.8 133 85.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 7.5e-55 217.2 128 83.6
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 4.6e-52 208.0 122 83.6
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 2.3e-51 205.7 132 75.0
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 8.6e-51 203.8 123 80.5
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 8.6e-51 203.8 135 72.6
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.1e-50 203.4 130 76.9
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.3e-50 201.4 130 73.8
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 7.3e-50 200.7 126 78.6
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.2e-49 199.9 128 75.0
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 2.1e-49 199.1 130 74.6
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 3.6e-49 198.4 130 74.6
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 3.6e-49 198.4 126 79.4
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 3.6e-49 198.4 129 72.9
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 6.2e-49 197.6 122 77.0
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 6.2e-49 197.6 122 77.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 8.1e-49 197.2 128 74.2
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.1e-48 196.8 119 79.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 2.3e-48 195.7 125 73.6
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 4.0e-48 194.9 122 74.6
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 5.2e-48 194.5 119 79.0
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 5.2e-48 194.5 119 79.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 6.8e-48 194.1 125 75.2
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 6.8e-48 194.1 123 74.8
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.2e-47 193.4 130 72.3
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.5e-47 193.0 126 75.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.5e-47 193.0 119 77.3
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.5e-47 193.0 121 73.6
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.0e-47 192.6 123 71.5
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.6e-47 192.2 128 68.8
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.6e-47 192.2 119 78.2
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.6e-47 192.2 129 72.9
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 3.4e-47 191.8 122 75.4
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 4.4e-47 191.4 123 73.2
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.8e-47 191.0 128 67.2
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 5.8e-47 191.0 125 75.2
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 7.5e-47 190.7 128 69.5
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.3e-46 189.9 122 74.6
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.3e-46 189.9 119 75.6
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.7e-46 189.5 120 75.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 2.2e-46 189.1 128 69.5
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 2.9e-46 188.7 119 75.6
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.9e-46 188.7 130 70.8
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.9e-46 188.7 122 72.1
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.7e-46 188.3 123 74.0
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 4.9e-46 188.0 122 71.3
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 4.9e-46 188.0 125 71.2
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.4e-45 186.4 119 75.6
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.4e-45 186.4 119 75.6
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.4e-45 186.4 119 75.6
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.4e-45 186.4 119 75.6
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.4e-45 186.4 146 64.4
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.9e-45 186.0 123 72.4
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.4e-45 185.7 119 74.8
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.4e-45 185.7 119 73.9
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 4.1e-45 184.9 126 73.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.1e-45 184.9 129 69.8
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 7.1e-45 184.1 122 70.5
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.2e-44 183.3 119 73.1
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.6e-44 183.0 119 74.8
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.1e-44 182.6 124 71.0
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.1e-44 182.6 125 67.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.7e-44 182.2 122 70.5
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 2.7e-44 182.2 119 70.6
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.5e-44 181.8 119 73.9
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.5e-44 181.8 129 69.8
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.6e-44 181.4 132 63.6
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 6.0e-44 181.0 124 70.2
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.0e-44 181.0 119 72.3
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 6.0e-44 181.0 119 70.6
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 6.0e-44 181.0 125 69.6
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 7.8e-44 180.6 128 65.6
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.0e-43 180.3 120 71.7
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.3e-43 179.1 122 68.0
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.3e-43 179.1 119 71.4
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.3e-43 179.1 119 71.4
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 5.1e-43 177.9 129 70.5
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-42 176.4 119 70.6
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.9e-42 176.0 120 69.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.5e-42 175.6 124 66.9
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 3.3e-42 175.3 119 68.1
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 7.3e-42 174.1 119 68.9
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.2e-41 173.3 123 68.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.1e-41 172.6 124 65.3
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.8e-41 172.2 123 61.8
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 3.6e-41 171.8 119 67.2
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.6e-41 171.8 117 66.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.7e-41 171.4 124 62.9
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 8.1e-41 170.6 128 64.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 2.3e-40 169.1 122 67.2
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.1e-40 168.7 132 64.4
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 4.0e-40 168.3 122 63.9
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.0e-40 168.3 119 67.2
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 6.8e-40 167.5 119 63.0
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 8.9e-40 167.2 119 67.2
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.2e-39 166.8 126 61.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.0e-39 166.0 131 58.8
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.0e-39 166.0 129 59.7
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 4.4e-39 164.9 111 69.4
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 4.4e-39 164.9 128 61.7
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 5.8e-39 164.5 128 60.9
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 5.8e-39 164.5 128 58.6
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-38 163.3 106 75.5
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-38 163.3 106 75.5
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.3e-38 163.3 128 63.3
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.3e-38 163.3 119 63.0
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.3e-38 163.3 122 59.8
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.9e-38 162.2 118 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 3.8e-38 161.8 119 61.3
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 6.4e-38 161.0 119 61.3
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 6.4e-38 161.0 122 59.0
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 8.4e-38 160.6 118 62.7
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-37 159.8 124 61.3
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.4e-37 159.8 113 69.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.4e-37 159.8 120 57.5
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.4e-37 159.8 119 62.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.9e-37 159.5 125 60.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.9e-37 159.5 128 56.2
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 3.2e-37 158.7 118 62.7
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 7.1e-37 157.5 122 62.3
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 9.2e-37 157.1 117 63.2
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 9.2e-37 157.1 123 61.0
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.6e-36 156.4 131 55.7
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.6e-36 156.4 120 60.8
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.1e-36 156.0 111 63.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 4.6e-36 154.8 124 61.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.6e-36 154.8 126 57.9
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.0e-36 154.5 125 60.8
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.0e-36 154.5 104 71.2
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-35 153.7 121 61.2
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.0e-35 153.7 121 61.2
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.3e-35 153.3 121 62.0
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.7e-35 152.9 109 68.8
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.9e-35 151.8 121 58.7
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.9e-35 151.8 121 58.7
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.9e-35 151.8 121 58.7
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 5.1e-35 151.4 111 65.8
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 6.6e-35 151.0 121 61.2
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.5e-34 149.1 120 63.3
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.6e-34 147.9 124 56.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.6e-33 146.4 124 56.5
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.6e-33 146.4 124 53.2
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 3.6e-33 145.2 118 55.9
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 4.7e-33 144.8 122 55.7
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 4.7e-33 144.8 124 55.6
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 6.2e-33 144.4 121 58.7
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 6.2e-33 144.4 121 58.7
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.1e-32 143.7 130 56.9
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.4e-32 142.5 124 56.5
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 6.9e-32 141.0 116 56.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.5e-31 139.8 123 54.5
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.5e-31 139.8 123 51.2
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 2.9e-30 135.6 122 54.1
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.4e-29 131.3 125 48.0
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.6e-28 129.8 93 64.5
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.7e-27 126.3 116 53.4
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.4e-24 116.7 63 82.5
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 2.4e-21 105.9 80 60.0
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.0e-19 99.0 57 80.7
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.9e-18 96.3 64 71.9
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.9e-18 96.3 64 71.9
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 7.4e-18 94.4 112 42.9
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.3e-17 93.6 65 70.8
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.8e-17 92.4 64 71.9
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.8e-16 89.7 61 73.8
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.8e-16 89.7 82 62.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 4.0e-16 88.6 55 67.3
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 9.0e-16 87.4 61 70.5
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.3e-14 83.6 54 68.5
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.8e-14 82.0 118 39.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 6.4e-14 81.3 61 59.0
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 9.3e-13 77.4 62 51.6
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-12 77.0 60 63.3
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 3.5e-12 75.5 58 69.0
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.6e-10 68.2 67 52.2
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.6e-07 59.3 62 45.2


User provided reference genes

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