Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 3.0e-213 745.0 385 100.0
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 1.7e-59 234.2 382 39.8
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 1.3e-56 224.6 381 39.1
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 1.3e-56 224.6 373 39.1
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 2.9e-43 180.3 382 34.3
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 3.8e-43 179.9 379 35.1
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 9.3e-42 175.3 382 33.5
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 1.8e-40 171.0 378 35.2
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 3.9e-40 169.9 383 34.2
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 1.9e-39 167.5 375 34.4
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 1.3e-38 164.9 378 37.0
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 1.3e-38 164.9 378 37.0
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 2.2e-38 164.1 378 36.5
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 2.8e-38 163.7 377 34.2
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 3.7e-38 163.3 380 34.5
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 8.2e-38 162.2 369 33.9
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 8.2e-38 162.2 392 32.7
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.8e-37 161.0 380 34.7
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.8e-37 161.0 382 33.5
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 3.1e-37 160.2 373 35.7
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.1e-37 159.8 379 33.5
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 4.1e-37 159.8 382 34.3
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 1.2e-36 158.3 377 35.3
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.2e-36 158.3 378 35.2
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.5e-36 157.9 379 33.2
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 2.0e-36 157.5 379 33.2
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 7.7e-36 155.6 371 32.9
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 1.0e-35 155.2 367 32.2
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 1.0e-35 155.2 376 35.4
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 2.9e-35 153.7 375 33.1
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 3.8e-35 153.3 389 35.0
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 6.5e-35 152.5 386 34.7
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 2.5e-34 150.6 387 33.6
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.2e-34 150.2 413 31.0
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 5.5e-34 149.4 375 31.7
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 9.4e-34 148.7 398 33.7
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 1.0e-32 145.2 364 33.5
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 3.0e-32 143.7 380 32.1
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 4.4e-31 139.8 379 32.7
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 2.2e-30 137.5 372 33.1
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 4.8e-30 136.3 371 32.6
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.1e-29 135.2 378 34.9
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 1.8e-29 134.4 375 34.9
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 3.1e-29 133.7 369 34.4
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 1.2e-28 131.7 379 32.5
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 2.0e-28 131.0 363 32.2
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 2.6e-28 130.6 380 31.8
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 4.5e-28 129.8 381 30.7
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 5.9e-28 129.4 383 32.6
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.7e-27 127.9 377 31.3
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 1.7e-27 127.9 375 32.0
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 5.0e-27 126.3 370 31.4
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 1.4e-26 124.8 388 32.0
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 2.5e-26 124.0 191 41.9
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 5.5e-26 122.9 373 33.0
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 7.2e-26 122.5 371 31.0
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 7.2e-26 122.5 387 32.0
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 9.4e-26 122.1 337 32.0
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 1.2e-25 121.7 371 29.6
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 1.6e-25 121.3 382 30.9
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 4.7e-25 119.8 390 29.7
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 8.0e-25 119.0 365 31.8
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 1.4e-24 118.2 367 30.8
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 1.8e-24 117.9 369 30.9
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 1.8e-24 117.9 388 32.7
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 3.9e-24 116.7 373 30.8
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 6.7e-24 115.9 393 32.1
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 8.8e-24 115.5 375 29.6
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 8.8e-24 115.5 161 47.2
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.1e-23 115.2 373 30.8
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 1.5e-23 114.8 384 29.4
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 2.6e-23 114.0 367 29.7
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 2.6e-23 114.0 386 31.9
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 4.4e-23 113.2 223 36.8
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 4.4e-23 113.2 393 29.3
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 9.7e-23 112.1 367 30.0
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 1.7e-22 111.3 379 30.3
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 3.7e-22 110.2 382 30.9
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 4.8e-22 109.8 339 28.9
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 6.3e-22 109.4 359 30.4
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 3.1e-21 107.1 401 31.7
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.2e-20 105.1 379 30.3
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 7.7e-20 102.4 187 38.0
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 1.3e-19 101.7 378 29.4
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 4.2e-18 96.7 264 33.3
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 9.4e-18 95.5 131 48.9
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 2.7e-17 94.0 240 32.1
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 4.7e-17 93.2 204 34.8
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 2.3e-16 90.9 320 30.6
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 4.0e-16 90.1 388 28.9
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.2e-15 88.6 389 29.3
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 1.2e-15 88.6 97 57.7
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 1.5e-15 88.2 208 36.1
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 2.6e-15 87.4 189 36.5
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 4.4e-15 86.7 191 37.2
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 4.4e-15 86.7 190 36.3
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 7.5e-15 85.9 236 31.8
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 2.8e-14 84.0 183 37.2
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 3.7e-14 83.6 135 44.4
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 4.8e-14 83.2 362 28.2
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 1.1e-13 82.0 302 31.1
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 1.4e-13 81.6 235 37.4
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 2.4e-13 80.9 81 58.0
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 2.4e-13 80.9 354 26.8
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 1.2e-12 78.6 81 58.0
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 1.6e-12 78.2 327 23.9
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 2.7e-12 77.4 371 27.5
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 3.5e-12 77.0 78 56.4
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 4.5e-12 76.6 218 32.6
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 7.7e-12 75.9 147 42.2
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 1.7e-11 74.7 115 43.5
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 2.2e-11 74.3 115 42.6
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 3.8e-11 73.6 95 50.5
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 1.4e-08 65.1 383 26.1
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 2.6e-07 60.8 55 61.8
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 5.7e-07 59.7 204 33.3
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 7.5e-07 59.3 318 25.8


User provided reference genes

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