Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 3.0e-298 1027.7 509 100.0
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.7e-240 835.9 511 81.6
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.9e-240 834.3 501 82.6
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-239 833.2 501 82.6
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 7.8e-238 827.0 511 80.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 2.2e-232 808.9 515 78.4
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.1e-231 803.9 514 77.8
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.7e-229 799.3 511 78.3
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 3.6e-227 791.6 514 76.1
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 9.0e-226 786.9 514 76.8
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.5e-225 786.2 514 76.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.5e-225 786.2 514 75.9
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.9e-224 781.2 514 75.5
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.5e-222 775.0 515 75.0
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 6.0e-222 774.2 510 75.1
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.9e-220 769.2 514 75.1
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 3.3e-220 768.5 514 75.7
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-218 763.5 511 74.6
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.0e-217 759.2 549 70.7
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 2.6e-217 758.8 512 74.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.4e-217 758.4 510 75.1
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 9.9e-217 756.9 514 73.3
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.2e-216 755.7 512 72.9
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 8.4e-216 753.8 514 74.3
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.9e-215 752.7 474 79.7
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.9e-215 752.7 510 73.1
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 3.2e-215 751.9 512 74.4
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.1e-214 749.2 493 75.7
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 6.0e-214 747.7 516 73.1
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.0e-213 746.9 513 72.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.8e-213 746.1 512 73.0
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 3.0e-213 745.3 511 72.4
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.1e-213 744.6 516 72.9
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 6.7e-213 744.2 512 73.4
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 8.7e-213 743.8 514 72.0
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.1e-212 743.4 514 71.4
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.5e-212 743.0 516 72.9
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 2.5e-212 742.3 514 71.2
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 3.3e-212 741.9 517 71.4
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 5.6e-212 741.1 512 71.1
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 7.4e-212 740.7 510 72.7
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.1e-211 739.2 508 70.9
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.1e-210 736.9 516 72.1
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.1e-210 736.9 512 72.1
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.1e-210 736.9 513 70.8
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.4e-210 736.5 513 70.2
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.4e-210 735.7 511 74.0
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 6.9e-210 734.2 503 72.4
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.5e-209 733.0 509 70.3
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 4.9e-208 728.0 514 70.0
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 8.4e-208 727.2 513 71.7
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.4e-207 726.5 602 64.1
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.5e-207 725.7 526 71.5
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 3.2e-207 725.3 516 70.9
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 7.1e-207 724.2 514 71.0
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.2e-206 723.4 512 70.3
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 2.1e-206 722.6 526 67.1
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.3e-205 719.9 513 70.2
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 5.1e-205 718.0 453 79.7
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 8.7e-205 717.2 511 71.8
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.1e-204 716.8 513 69.8
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.9e-204 716.1 512 68.9
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 4.3e-204 714.9 552 66.1
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 4.3e-204 714.9 513 70.0
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 5.7e-204 714.5 481 74.4
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 5.7e-204 714.5 501 69.9
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.2e-203 712.6 552 65.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.2e-203 712.6 514 71.0
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.8e-203 712.2 511 71.4
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 3.7e-203 711.8 510 70.4
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.1e-202 710.3 506 70.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.8e-202 709.5 509 68.4
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.6e-201 705.7 513 68.2
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 2.2e-200 702.6 510 69.2
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.2e-200 702.6 513 68.8
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.2e-200 702.6 514 69.1
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.9e-200 702.2 522 68.6
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 8.5e-200 700.7 510 68.8
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 8.5e-200 700.7 526 68.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.5e-199 699.1 512 68.8
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.5e-199 699.1 513 69.4
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 3.2e-199 698.7 512 66.8
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.2e-199 698.7 499 69.1
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.2e-199 698.4 513 68.4
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 4.2e-199 698.4 513 68.4
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 5.5e-199 698.0 512 68.6
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.2e-198 696.8 515 68.5
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 4.6e-198 694.9 512 68.4
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 4.6e-198 694.9 513 68.4
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 4.6e-198 694.9 513 68.4
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 7.9e-198 694.1 510 68.6
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.0e-197 693.7 510 68.4
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-197 693.3 510 68.6
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.8e-197 693.0 510 68.2
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.8e-197 693.0 515 68.5
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 2.3e-197 692.6 512 67.8
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.3e-197 692.6 510 68.6
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 6.7e-197 691.0 513 68.2
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 3.7e-195 685.3 510 68.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.8e-195 684.9 512 68.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.4e-194 683.3 513 67.3
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.4e-194 682.6 512 68.8
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 5.3e-194 681.4 509 67.0
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 2.6e-193 679.1 490 69.4
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.6e-193 679.1 568 63.0
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 1.9e-191 672.9 480 70.4
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 5.5e-191 671.4 480 69.8
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.6e-190 669.8 498 66.5
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.0e-189 665.6 464 70.9
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 8.2e-187 657.5 498 65.3
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.4e-186 656.8 401 79.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 3.1e-186 655.6 583 59.3
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.6e-185 652.5 512 66.8
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 7.7e-185 651.0 510 63.1
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-184 650.2 501 65.1
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.9e-184 649.0 538 64.7
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.0e-184 648.3 512 66.2
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.9e-183 646.4 513 64.7
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 3.6e-182 642.1 451 71.0
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 4.7e-182 641.7 472 69.1
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 8.0e-182 641.0 510 64.5
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.5e-180 636.7 509 62.3
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 3.3e-180 635.6 404 76.7
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 3.2e-175 619.0 457 67.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 7.5e-156 554.7 532 54.3
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 5.6e-151 538.5 541 52.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 9.5e-151 537.7 665 48.0
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 6.0e-145 518.5 483 58.4
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.3e-144 516.5 420 62.1
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 3.6e-142 509.2 511 57.1
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 7.8e-137 491.5 457 58.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.9e-127 460.3 273 80.2
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.7e-121 439.9 341 64.2
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.2e-114 416.4 277 76.5
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 2.0e-108 397.1 279 69.5
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.0e-88 331.6 243 67.9
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 2.9e-83 313.5 240 63.3
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 7.4e-79 298.9 243 61.7
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.3e-77 292.7 212 68.9
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 3.4e-76 290.0 219 69.9
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.8e-67 260.0 499 38.5
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.8e-62 243.8 554 31.8
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.0e-55 221.1 393 35.4
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 3.3e-42 177.2 140 65.0
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.2e-42 176.0 186 50.0
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.4e-39 166.8 121 66.1
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 8.3e-38 162.5 110 75.5
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 5.0e-35 153.3 197 40.1
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.3e-34 150.6 114 66.7
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.2e-31 142.1 249 39.4
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.4e-31 140.6 249 39.0
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 3.0e-27 127.5 67 88.1
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.7e-25 120.2 71 84.5
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.5e-18 97.8 170 30.0
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 6.2e-17 93.2 72 66.7
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 6.4e-14 83.2 115 45.2
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 2.7e-12 77.8 83 48.2
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 4.6e-12 77.0 82 51.2
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.0e-08 63.9 36 83.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0


User provided reference genes

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