Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10321 Avicennia marina HOM05D006702 ORTHO05D008540 6.2e-134 480.7 230 100.0
Migut.L01703 Erythranthe guttata HOM05D006702 ORTHO05D008540 4.9e-54 215.3 163 68.1
SGA_v2.0_scaffold224G42945 Striga asiatica HOM05D006702 ORTHO05D008540 2.7e-52 209.5 180 63.3
Oeu045060.1 Olea europaea HOM05D006702 ORTHO05D008540 6.8e-48 194.9 183 62.8
Nitab4.5_0008928g0010 Nicotiana tabacum HOM05D006702 ORTHO05D008540 2.4e-45 186.4 140 70.0
Nitab4.5_0000578g0200 Nicotiana tabacum HOM05D006702 ORTHO05D008540 3.2e-45 186.0 154 65.6
Actinidia32493 Actinidia chinensis HOM05D006702 ORTHO05D008540 7.0e-45 184.9 134 71.6
CSS0007009 Camellia sinensis var. sinensis HOM05D006702 ORTHO05D008540 7.0e-45 184.9 153 65.4
Cc06_g04220 Coffea canephora HOM05D006702 ORTHO05D008540 1.6e-44 183.7 167 61.1
CAN.G900.34 Capsicum annuum HOM05D006702 ORTHO05D008540 6.0e-44 181.8 153 64.7
TWI77G0937 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 2.5e-42 176.4 163 58.9
Lalb_Chr06g0171741 Lupinus albus HOM05D006702 ORTHO05D008540 3.3e-42 176.0 189 52.4
Gohir.A04G072000 Gossypium hirsutum HOM05D006702 ORTHO05D008540 5.6e-42 175.3 172 55.8
PGR142G4417 Punica granatum HOM05D006702 ORTHO05D008540 1.2e-41 174.1 136 64.0
QL07p043496 Quercus lobata HOM05D006702 ORTHO05D008540 1.6e-41 173.7 209 51.7
Gorai.009G414600 Gossypium raimondii HOM05D006702 ORTHO05D008540 3.6e-41 172.6 172 55.8
ClCG04G009300 Citrullus lanatus HOM05D006702 ORTHO05D008540 8.1e-41 171.4 161 59.0
Solyc09g008190.3 Solanum lycopersicum HOM05D006702 ORTHO05D008540 2.3e-40 169.9 139 66.2
PGSC0003DMG400003886 Solanum tuberosum HOM05D006702 ORTHO05D008540 2.3e-40 169.9 108 76.9
Gohir.D09G142300 Gossypium hirsutum HOM05D006702 ORTHO05D008540 4.0e-40 169.1 163 56.4
QL07p043331 Quercus lobata HOM05D006702 ORTHO05D008540 5.2e-40 168.7 165 57.0
CiPaw.10G130000 Carya illinoinensis HOM05D006702 ORTHO05D008540 6.8e-40 168.3 133 62.4
Gohir.A09G146600 Gossypium hirsutum HOM05D006702 ORTHO05D008540 6.8e-40 168.3 150 60.0
Prupe.6G232200 Prunus persica HOM05D006702 ORTHO05D008540 6.8e-40 168.3 156 57.7
Gorai.006G163300 Gossypium raimondii HOM05D006702 ORTHO05D008540 8.9e-40 167.9 163 57.1
Cpa.g.sc54.80 Carica papaya HOM05D006702 ORTHO05D008540 1.2e-39 167.5 162 57.4
MELO3C024465.2 Cucumis melo HOM05D006702 ORTHO05D008540 1.2e-39 167.5 172 55.2
Duzib106G0264 Durio zibethinus HOM05D006702 ORTHO05D008540 2.0e-39 166.8 149 59.7
Sopen09g002990 Solanum pennellii HOM05D006702 ORTHO05D008540 2.0e-39 166.8 139 65.5
CiPaw.10G130200 Carya illinoinensis HOM05D006702 ORTHO05D008540 3.4e-39 166.0 162 55.6
BcaB01g05844 Brassica carinata HOM05D006702 ORTHO05D008540 4.4e-39 165.6 167 56.9
BolC3t12702H Brassica oleracea HOM05D006702 ORTHO05D008540 4.4e-39 165.6 167 56.9
C03p01460 Brassica napus HOM05D006702 ORTHO05D008540 7.5e-39 164.9 170 55.9
Manes.09G067614 Manihot esculenta HOM05D006702 ORTHO05D008540 9.9e-39 164.5 198 48.0
Thecc.05G066700 Theobroma cacao HOM05D006702 ORTHO05D008540 9.9e-39 164.5 142 63.4
A03p01140 Brassica napus HOM05D000070 ORTHO05D001255 1.3e-38 164.1 172 55.2
CANSAT80G0135 Cannabis sativa HOM05D006702 ORTHO05D008540 1.7e-38 163.7 169 54.4
FvH4_6g16390 Fragaria vesca HOM05D006702 ORTHO05D008540 2.2e-38 163.3 134 63.4
FAN14G1896 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.2e-38 163.3 134 63.4
GSVIVG01025733001 Vitis vinifera HOM05D006702 ORTHO05D008540 2.2e-38 163.3 85 85.9
FAN05G3937 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.9e-38 162.9 137 63.5
Haze_20547 Corylus avellana HOM05D006702 ORTHO05D008540 6.4e-38 161.8 199 49.7
CsaV3_6G039890 Cucumis sativus L. HOM05D006702 ORTHO05D008540 6.4e-38 161.8 139 61.2
TWI53G0904 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 8.3e-38 161.4 94 77.7
BraA03t09496Z Brassica rapa HOM05D006702 ORTHO05D008540 1.1e-37 161.0 187 51.9
Haze_20544 Corylus avellana HOM05D006702 ORTHO05D008540 1.1e-37 161.0 167 53.9
CiPaw.09G172500 Carya illinoinensis HOM05D006702 ORTHO05D008540 1.4e-37 160.6 93 77.4
MD04G1093600 Malus domestica HOM05D006702 ORTHO05D008540 1.4e-37 160.6 153 59.5
RcHm_v2.0_Chr3g0470251 Rosa chinensis HOM05D006702 ORTHO05D008540 2.4e-37 159.8 139 61.2
Potri.016G093000 Populus trichocarpa HOM05D006702 ORTHO05D008540 4.1e-37 159.1 167 53.9
Eucgr.K02933 Eucalyptus grandis HOM05D006702 ORTHO05D008540 7.1e-37 158.3 135 63.0
Lj5g0016847 Lotus japonicus HOM05D006702 ORTHO05D008540 7.1e-37 158.3 132 62.1
THA.LOC104823233 Tarenaya hassleriana HOM05D006702 ORTHO05D008540 7.1e-37 158.3 146 61.0
Glyma.13G142500 Glycine max HOM05D006702 ORTHO05D008540 1.6e-36 157.1 107 71.0
Duzib128G1950 Durio zibethinus HOM05D006702 ORTHO05D008540 2.1e-36 156.8 140 61.4
Psat6g074160 Pisum sativum HOM05D006702 ORTHO05D008540 2.1e-36 156.8 107 72.9
Sp6g39370 Schrenkiella parvula HOM05D006702 ORTHO05D008540 2.1e-36 156.8 146 57.5
Gohir.D04G110501 Gossypium hirsutum HOM05D006702 ORTHO05D008540 2.7e-36 156.4 88 80.7
Medtr1g063240 Medicago truncatula HOM05D006702 ORTHO05D008540 3.5e-36 156.0 110 70.9
AT5G03370 Arabidopsis thaliana HOM05D006702 ORTHO05D008540 4.6e-36 155.6 146 56.8
Ca_11502_v3 Cicer arietinum L. HOM05D006702 ORTHO05D008540 4.6e-36 155.6 109 71.6
Ciclev10012549m.g Citrus clementina HOM05D006702 ORTHO05D008540 4.6e-36 155.6 135 60.7
AL6G12700 Arabidopsis lyrata HOM05D006702 ORTHO05D008540 7.8e-36 154.8 145 57.2
TPR.G11275 Trifolium pratense HOM05D006702 ORTHO05D008540 1.0e-35 154.5 110 70.9
Lj2P122T8 Lonicera japonica HOM05D006702 ORTHO05D008540 2.3e-35 153.3 83 84.3
Nn2g13794 Nelumbo nucifera HOM05D006702 ORTHO05D008540 2.3e-35 153.3 143 58.0
Nn2g13797 Nelumbo nucifera HOM05D006702 ORTHO05D008540 2.3e-35 153.3 143 58.0
unitig_0.g683 Utricularia gibba HOM05D006702 ORTHO05D008540 2.3e-35 153.3 153 55.6
Sc02g0001610 Simmondsia chinensis HOM05D006702 ORTHO05D008540 3.0e-35 152.9 85 78.8
CARHR209960 Cardamine hirsuta HOM05D006702 ORTHO05D008540 3.9e-35 152.5 130 61.5
Aa31LG1G21770 Aethionema arabicum HOM05D006702 ORTHO05D008540 5.1e-35 152.1 105 68.6
VMungo0720G0934 Vigna mungo HOM05D006702 ORTHO05D008540 5.1e-35 152.1 88 79.5
Carub.0006s0219 Capsella rubella HOM05D006702 ORTHO05D008540 6.6e-35 151.8 143 57.3
Sed0024166 Sechium edule HOM05D006702 ORTHO05D008540 8.6e-35 151.4 88 77.3
Phvul.007G219250 Phaseolus vulgaris HOM05D006702 ORTHO05D008540 1.1e-34 151.0 84 82.1
Sabra16G0098200 Salix brachista HOM05D006702 ORTHO05D008540 1.5e-34 150.6 85 81.2
Hma1.2p1_0205F.1_g087030 Hydrangea macrophylla HOM05D006702 ORTHO05D008540 1.9e-34 150.2 142 58.5
ECA233G1636 Erigeron canadensis HOM05D006702 ORTHO05D008540 7.3e-34 148.3 103 68.0
TAR369G0293 Trochodendron aralioides HOM05D006702 ORTHO05D008540 9.5e-34 147.9 83 79.5
PSO339G3061 Papaver somniferum HOM05D006702 ORTHO05D008540 1.6e-33 147.1 159 53.5
Thhalv10003274m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 2.1e-33 146.7 179 49.7
AUR62042500 Chenopodium quinoa HOM05D006702 ORTHO05D008540 8.1e-33 144.8 91 73.6
Thhalv10014711m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 1.1e-32 144.4 84 76.2
Atru.chr8.1809 Acer truncatum HOM05D006702 ORTHO05D008540 2.4e-32 143.3 129 61.2
EL10Ac7g16628 Beta vulgaris HOM05D006702 ORTHO05D008540 3.1e-32 142.9 102 65.7
AUR62040349 Chenopodium quinoa HOM05D006702 ORTHO05D008540 6.8e-32 141.7 83 78.3
Lalb_Chr24g0398871 Lupinus albus HOM05D006702 ORTHO05D008540 1.2e-31 141.0 90 70.0
Thhalv10029095m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 1.5e-31 140.6 84 73.8
ATR0171G014 Amborella trichopoda HOM05D006702 ORTHO05D008540 2.6e-31 139.8 85 74.1
Aqoxy2G01772 Aquilegia oxysepala HOM05D006702 ORTHO05D008540 4.4e-31 139.0 79 78.5
CARHR118060 Cardamine hirsuta HOM05D006702 ORTHO05D008540 8.4e-30 134.8 84 70.2
CDE05G1201 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 1.6e-28 130.6 85 72.9
Nitab4.5_0008928g0020 Nicotiana tabacum HOM05D006702 ORTHO05D008540 1.3e-27 127.5 85 69.4
DCAR_014995 Daucus carota HOM05D006702 ORTHO05D008540 2.3e-27 126.7 91 65.9
DCAR_020817 Daucus carota HOM05D006702 ORTHO05D008540 3.9e-27 125.9 85 65.9
Hund25533 Selenicereus undatus HOM05D006702 ORTHO05D008540 3.9e-27 125.9 146 50.7
SEGI_37807 Sequoiadendron giganteum HOM05D006702 ORTHO05D008540 5.1e-27 125.6 135 48.9
Lsat_1_v5_gn_6_25081 Lactuca sativa HOM05D006702 ORTHO05D008540 1.5e-26 124.0 131 51.1
arahy.Tifrunner.gnm1.ann1.C2LQEN Arachis hypogaea HOM05D006702 ORTHO05D008540 2.5e-26 123.2 71 78.9
arahy.Tifrunner.gnm1.ann1.NQ6TBI Arachis hypogaea HOM05D006702 ORTHO05D008540 2.5e-26 123.2 71 78.9
CAN.G900.33 Capsicum annuum HOM05D006702 ORTHO05D008540 1.3e-25 120.9 85 65.9
AagrBONN_evm.TU.Sc2ySwM_368.2290 Anthoceros agrestis HOM05D006702 ORTHO05D008540 6.2e-25 118.6 93 60.2
Peaxi162Scf01139g00005 Petunia axillaris HOM05D006702 ORTHO05D008540 1.4e-24 117.5 85 63.5
Potri.006G124966 Populus trichocarpa HOM05D006702 ORTHO05D008540 2.6e-23 113.2 90 61.1
MSTRG.19178 Avicennia marina HOM05D006702 ORTHO05D008540 3.4e-23 112.8 163 46.0
Os06g0264700 Oryza sativa ssp. japonica HOM05D006702 ORTHO05D008540 3.5e-20 102.8 95 54.7
Zm00001eb380050 Zea mays HOM05D006702 ORTHO05D008540 3.5e-20 102.8 97 52.6
Mapoly0013s0202 Marchantia polymorpha HOM05D006702 ORTHO05D008540 4.6e-20 102.4 85 52.9
Pp3c18_4750 Physcomitrium patens HOM05D006702 ORTHO05D008540 6.0e-20 102.1 98 49.0
SMO137G0384 Selaginella moellendorffii HOM05D006702 ORTHO05D008540 1.7e-19 100.5 83 56.6
AagrBONN_evm.TU.Sc2ySwM_362.139 Anthoceros agrestis HOM05D006702 ORTHO05D008540 1.1e-18 97.8 87 51.7
Zm00001eb380040 Zea mays HOM05D006702 ORTHO05D008540 3.3e-18 96.3 90 55.6
Pp3c1_15300 Physcomitrium patens HOM05D006702 ORTHO05D008540 4.0e-16 89.4 92 44.6
Pp3c5_16270 Physcomitrium patens HOM05D006702 ORTHO05D008540 3.5e-12 76.3 96 39.6
FAN02G1423 Fragaria x ananassa HOM05D006702 ORTHO05D008540 1.1e-10 71.2 80 53.8
FAN05G1090 Fragaria x ananassa HOM05D006702 ORTHO05D008540 1.1e-10 71.2 80 53.8
CDE05G1088 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 3.3e-10 69.7 40 77.5
Sabra06G0098700 Salix brachista HOM05D000002 ORTHO05D000047 5.3e-08 62.4 50 62.0
VMungo1215G2316 Vigna mungo HOM05D017790 ORTHO05D002759 2.2e-06 57.0 80 38.8


User provided reference genes

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