Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1973.4 1002 100.0
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1679.5 1000 83.7
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1637.5 1067 77.5
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1607.4 1006 79.4
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1604.3 1006 79.3
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1593.2 1061 76.3
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1583.2 1006 77.2
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1571.6 1004 77.7
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1559.7 1138 71.2
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1558.5 1004 77.2
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1527.7 1013 75.1
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1525.8 1012 75.1
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1520.0 1037 73.2
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1520.0 1004 75.1
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1519.2 1010 75.0
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1518.4 1012 74.7
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1518.1 1009 74.2
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1516.9 1075 71.4
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1515.7 1012 74.5
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1512.7 1008 74.5
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1507.7 1001 74.8
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1503.0 1004 74.0
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1502.3 1012 73.6
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1501.5 1012 73.6
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1500.7 992 75.6
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1493.8 1010 73.3
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1485.7 1015 73.1
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1484.5 1012 73.0
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1483.0 1005 72.7
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1482.2 1010 73.7
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1482.2 1008 72.6
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1481.8 1012 73.7
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1481.5 1041 71.4
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1475.7 1011 72.7
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1473.8 1012 72.1
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1471.8 1010 72.3
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1471.4 1012 72.0
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1469.5 1012 71.9
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1468.8 1012 71.9
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1468.4 1010 72.2
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1467.6 1012 71.9
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1466.8 1011 72.5
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1466.4 1017 73.2
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1464.9 1011 72.1
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1461.0 1012 71.6
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1460.3 989 74.1
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1460.3 1012 71.6
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1460.3 1009 72.1
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1459.5 1012 71.2
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1457.2 1010 72.1
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1455.7 1010 71.7
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1453.7 1005 71.6
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1451.8 1012 70.8
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1451.0 1013 71.0
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1451.0 1013 71.1
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1449.5 1008 71.3
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1447.2 1012 71.4
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1447.2 912 78.6
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1444.5 1013 70.7
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1443.7 1013 70.5
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1442.2 1015 71.9
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1442.2 1015 72.0
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1441.4 1009 70.9
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1437.2 1007 71.0
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1436.0 1011 71.9
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1434.9 1005 71.0
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1432.5 1010 71.0
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1432.2 1008 71.6
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1429.5 1006 71.0
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1417.1 1009 70.2
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1413.7 1012 70.9
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1413.7 1012 69.4
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1411.0 1014 69.8
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1411.0 1012 69.7
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1406.0 1007 69.9
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1405.6 1011 68.8
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1387.1 1024 67.9
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1380.5 1012 68.1
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1379.8 1012 69.7
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1378.2 1010 68.9
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1372.8 912 74.2
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1365.5 1006 68.1
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1344.7 1027 67.9
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1340.5 1092 64.5
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1333.9 1026 67.5
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1312.0 1006 66.8
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1293.5 893 71.0
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1272.7 1017 62.4
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1270.8 1013 64.6
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1253.0 943 67.3
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1240.7 1002 64.1
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1225.3 1016 62.8
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1202.2 836 70.3
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1164.1 1015 59.4
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 0.0e+00 1121.3 817 70.0
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1078.5 865 65.4
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1078.2 964 56.4
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 6.6e-305 1050.8 721 73.1
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.5e-296 1023.1 882 57.7
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 3.1e-294 1015.4 699 73.1
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 4.7e-279 964.9 611 77.3
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 4.4e-277 958.4 1020 48.5
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 6.2e-271 937.9 1016 48.5
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 2.4e-267 926.0 1012 48.3
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 3.2e-267 925.6 611 73.2
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.6e-242 843.6 991 45.5
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 1.6e-239 833.6 537 76.2
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 4.2e-235 818.9 1031 42.9
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 7.2e-235 818.1 615 66.3
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 2.7e-226 789.6 508 77.0
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.4e-222 777.3 507 74.2
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.4e-217 760.8 507 74.6
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 3.0e-217 759.6 504 75.2
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 8.0e-210 734.9 1015 40.7
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 3.5e-189 666.4 1013 40.8
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.9e-171 607.4 484 65.5
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 6.9e-153 545.8 393 71.5
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 3.8e-135 486.9 544 50.6
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 8.2e-130 469.2 308 74.0
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 5.3e-129 466.5 409 59.4
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 1.2e-125 455.3 1031 30.9
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 2.7e-117 427.6 389 56.8
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 8.8e-116 422.5 404 54.7
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 1.3e-114 418.7 463 53.1
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 1.6e-109 401.7 386 57.3
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 1.1e-107 395.6 1164 27.7
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 2.1e-101 374.8 304 62.8
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 3.3e-99 367.5 280 66.8
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.7e-82 312.0 300 50.3
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 9.1e-81 306.2 232 66.4
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 8.9e-68 263.1 224 63.8
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 5.8e-67 260.4 213 62.4
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-66 257.3 310 43.9
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 3.9e-63 247.7 141 83.7
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 3.7e-50 204.5 177 56.5
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 8.1e-45 186.8 131 75.6
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 1.8e-44 185.7 129 72.9
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 2.0e-43 182.2 126 71.4
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 1.0e-31 143.3 92 71.7
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 1.1e-30 139.8 188 38.3
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 3.1e-28 131.7 178 44.4
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 5.3e-28 131.0 88 65.9
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 2.2e-26 125.6 79 78.5
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 1.9e-25 122.5 90 64.4
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 7.9e-24 117.1 76 73.7
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 1.3e-21 109.8 72 69.4
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 1.6e-21 109.4 78 66.7
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 4.8e-21 107.8 82 64.6
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.1e-20 106.7 95 66.3
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.4e-17 96.3 123 44.7
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 2.1e-16 92.4 121 44.6
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.5e-16 91.7 68 67.6
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.6e-13 82.8 56 67.9
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 2.1e-13 82.4 47 76.6
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-12 77.8 99 43.4
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 7.6e-11 73.9 125 37.6
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 7.6e-11 73.9 554 21.7
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 1.7e-10 72.8 125 36.8
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.7e-10 72.8 167 31.7
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 4.9e-10 71.2 47 72.3
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 8.4e-10 70.5 47 68.1
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 1.1e-09 70.1 125 36.8
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.4e-09 69.7 173 30.1
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 1.9e-09 69.3 125 36.8
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 4.2e-09 68.2 167 29.9
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 9.3e-09 67.0 130 34.6
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 2.7e-08 65.5 121 33.1
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 1.8e-07 62.8 129 31.0
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 1.8e-07 62.8 129 31.0
ClCG08G003770 Citrullus lanatus HOM05D002786 ORTHO05D003493 2.3e-07 62.4 155 29.0
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 2.3e-07 62.4 134 29.9
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 3.0e-07 62.0 127 34.6
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 3.0e-07 62.0 127 34.6
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 3.0e-07 62.0 127 34.6
MELO3C010592.2 Cucumis melo HOM05D002786 ORTHO05D003493 6.7e-07 60.8 155 28.4
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 1.1e-06 60.1 136 30.1
CsaV3_1G023100 Cucumis sativus L. HOM05D002786 ORTHO05D003493 1.5e-06 59.7 155 28.4
SMO169G0196 Selaginella moellendorffii HOM05D002786 ORTHO05D003493 1.5e-06 59.7 140 29.3
Rhsim09G0037400 Rhododendron simsii HOM05D002786 ORTHO05D003493 1.9e-06 59.3 193 28.0
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 3.3e-06 58.5 125 30.4
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 4.3e-06 58.2 90 35.6
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 5.7e-06 57.8 125 28.8
Carub.0005s2578 Capsella rubella HOM05D002786 ORTHO05D003493 9.7e-06 57.0 224 24.1


User provided reference genes

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