Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 3.5e-167 593.2 924 100.0
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 2.3e-86 324.7 238 68.5
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 1.3e-81 308.9 241 61.4
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 2.5e-77 294.7 220 65.0
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 5.7e-69 266.9 241 53.9
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 3.3e-61 241.1 224 56.2
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 4.3e-61 240.7 240 53.3
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 5.7e-61 240.4 203 57.1
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 2.2e-60 238.4 234 53.4
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 2.2e-60 238.4 233 53.2
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 1.4e-59 235.7 234 52.6
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 5.3e-59 233.8 198 58.1
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 2.0e-58 231.9 212 55.7
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 4.5e-58 230.7 233 50.6
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 7.7e-58 229.9 234 51.3
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 7.7e-58 229.9 227 52.4
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 1.0e-57 229.6 212 54.7
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 3.8e-57 227.6 232 51.7
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 1.1e-56 226.1 212 54.7
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 1.9e-56 225.3 223 53.4
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 1.2e-55 222.6 213 52.6
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 1.2e-55 222.6 225 51.6
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 2.7e-55 221.5 189 58.7
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 2.7e-55 221.5 193 58.0
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 4.7e-55 220.7 179 60.9
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 4.7e-55 220.7 199 54.3
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 1.0e-54 219.5 204 53.9
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 1.4e-54 219.2 227 51.5
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.4e-54 219.2 227 51.5
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.4e-54 219.2 227 51.5
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 1.4e-54 219.2 204 53.9
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 3.0e-54 218.0 193 57.0
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 6.7e-54 216.9 187 57.8
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 8.8e-54 216.5 176 59.7
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 3.3e-53 214.5 175 61.1
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 3.3e-53 214.5 201 56.7
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 3.3e-53 214.5 201 56.7
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 4.4e-53 214.2 201 56.2
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 5.7e-53 213.8 202 53.0
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 5.7e-53 213.8 248 46.0
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 1.3e-52 212.6 212 49.5
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 2.8e-52 211.5 206 53.9
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 4.8e-52 210.7 225 50.2
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 1.8e-51 208.8 179 56.4
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 1.8e-51 208.8 172 57.6
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 1.2e-50 206.1 215 50.7
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 1.6e-50 205.7 205 50.7
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 1.6e-50 205.7 183 54.1
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 1.6e-50 205.7 205 51.2
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 2.0e-50 205.3 233 49.4
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 4.5e-50 204.1 172 55.2
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 7.7e-50 203.4 174 55.7
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 7.7e-50 203.4 202 50.0
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 1.3e-49 202.6 185 53.0
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 1.7e-49 202.2 184 54.9
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 2.9e-49 201.4 200 51.5
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 3.8e-49 201.1 209 49.8
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 5.0e-49 200.7 189 51.3
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 5.0e-49 200.7 172 57.6
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 1.5e-48 199.1 198 51.5
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 3.2e-48 198.0 180 53.3
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 2.1e-47 195.3 190 51.1
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 4.7e-47 194.1 173 54.9
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 6.1e-47 193.7 182 54.4
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 1.4e-46 192.6 174 52.3
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 6.7e-46 190.3 172 55.8
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 6.7e-46 190.3 187 52.4
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 1.1e-45 189.5 188 49.5
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 2.6e-45 188.3 201 49.3
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 3.3e-45 188.0 173 54.3
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 7.5e-45 186.8 164 54.3
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 1.7e-44 185.7 194 50.5
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 1.7e-44 185.7 172 52.3
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 2.2e-44 185.3 237 43.9
AL3G18040 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.8e-44 184.9 184 52.2
AL3G18070 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.8e-44 184.9 184 52.2
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.8e-44 184.9 184 52.2
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 6.3e-44 183.7 184 51.1
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 1.4e-43 182.6 196 50.5
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 3.1e-43 181.4 167 53.9
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 7.0e-43 180.3 169 52.7
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 9.1e-43 179.9 185 51.4
AL159U10010 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.7e-42 178.3 184 51.1
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 2.9e-41 174.9 163 48.5
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 4.7e-39 167.5 163 48.5
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 5.7e-37 160.6 161 47.2
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 9.8e-37 159.8 160 51.2
CDE01G0787 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 5.9e-34 150.6 174 45.4
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 7.7e-34 150.2 152 52.6
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 1.9e-32 145.6 129 53.5
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 6.1e-31 140.6 129 48.8
CDE11G0294 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 1.8e-30 139.0 143 47.6
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 2.3e-30 138.7 139 46.0
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 3.0e-30 138.3 103 68.0
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 2.0e-29 135.6 144 46.5
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 2.2e-28 132.1 128 48.4
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 8.3e-28 130.2 145 44.8
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 8.3e-28 130.2 145 44.8
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 2.0e-26 125.6 166 39.8
HPP92_015997 Vanilla planifolia HOM05D006926 ORTHO05D008863 3.6e-23 114.8 127 45.7
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 3.4e-21 108.2 100 58.0
Eucgr.B01739 Eucalyptus grandis HOM05D006926 ORTHO05D008863 1.2e-18 99.8 81 56.8
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 1.2e-13 83.2 105 45.7
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 2.6e-13 82.0 49 85.7
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 9.8e-13 80.1 138 38.4
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 1.7e-12 79.3 141 36.2
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 2.0e-10 72.4 51 70.6
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.0e-10 72.4 146 28.8
Prupe.1G018400 Prunus persica HOM05D000424 ORTHO05D000355 2.7e-10 72.0 194 27.3
Migut.O00161 Erythranthe guttata HOM05D002460 ORTHO05D002716 1.7e-09 69.3 201 21.4
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 3.9e-09 68.2 51 60.8
SEGI_24878 Sequoiadendron giganteum HOM05D006926 ORTHO05D008863 1.9e-08 65.9 100 34.0
Cc07_g19510 Coffea canephora HOM05D000424 ORTHO05D000355 4.3e-08 64.7 153 26.8
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 5.6e-08 64.3 168 23.8
THA.LOC104808562 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 5.6e-08 64.3 118 31.4
SEGI_06598 Sequoiadendron giganteum HOM05D005973 ORTHO05D007285 9.5e-08 63.5 154 28.6
Rhsim04G0199600 Rhododendron simsii HOM05D000424 ORTHO05D000355 1.6e-07 62.8 175 24.6
TAR627G0861 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.1e-07 62.4 143 30.1
Glyma.01G235800 Glycine max HOM05D000424 ORTHO05D000355 2.8e-07 62.0 125 27.2
Hma1.2p1_1572F.1_g291500 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.8e-07 62.0 125 28.8
arahy.Tifrunner.gnm1.ann1.TALZ6N Arachis hypogaea HOM05D006749 ORTHO05D008352 4.7e-07 61.2 269 23.4
SEGI_24584 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.7e-07 61.2 225 22.2
SGA_v2.0_scaffold165G38283 Striga asiatica HOM05D000424 ORTHO05D000355 4.7e-07 61.2 160 23.8
SEGI_31641 Sequoiadendron giganteum HOM05D000424 ORTHO05D002854 6.2e-07 60.8 132 26.5
Nn4g24095 Nelumbo nucifera HOM05D000424 ORTHO05D000355 8.1e-07 60.5 144 25.0
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.1e-06 60.1 145 24.8
arahy.Tifrunner.gnm1.ann1.8GL56R Arachis hypogaea HOM05D006749 ORTHO05D008352 1.1e-06 60.1 208 25.0
CARHR076470 Cardamine hirsuta HOM05D002460 ORTHO05D002716 1.1e-06 60.1 148 24.3
Nn1g06443 Nelumbo nucifera HOM05D000424 ORTHO05D000355 1.1e-06 60.1 126 29.4
Phvul.002G043300 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.1e-06 60.1 128 26.6
Pp3c3_19780 Physcomitrium patens HOM05D006926 ORTHO05D008863 1.4e-06 59.7 121 26.4
Glyma.11G007400 Glycine max HOM05D000424 ORTHO05D000355 3.1e-06 58.5 172 25.6
TWI53G1953 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 3.1e-06 58.5 134 28.4
Pp3c2_27580 Physcomitrium patens HOM05D006926 ORTHO05D002107 4.0e-06 58.2 137 27.7
Ciclev10019225m.g Citrus clementina HOM05D000424 ORTHO05D002854 5.2e-06 57.8 157 23.6
MD16G1030100 Malus domestica HOM05D000424 ORTHO05D000355 5.2e-06 57.8 131 25.2
RcHm_v2.0_Chr4g0386451 Rosa chinensis HOM05D000424 ORTHO05D000355 5.2e-06 57.8 156 28.2
AT3G02490 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 8.9e-06 57.0 227 22.5
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 8.9e-06 57.0 112 31.2


User provided reference genes

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