Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1787.3 895 100.0
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1613.2 875 91.5
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1526.5 874 85.8
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 880 85.0
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 880 84.9
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 874 85.2
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1521.9 874 85.7
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 880 85.5
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 891 84.4
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1516.9 880 84.9
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1515.4 883 84.1
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1515.0 880 85.2
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 880 84.9
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 880 84.7
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 880 84.4
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 886 83.4
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 880 84.5
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1508.8 905 83.2
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1506.9 879 83.8
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 874 84.8
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1505.3 878 84.4
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1505.0 878 84.5
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 876 84.8
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 878 84.5
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1503.8 892 83.5
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1503.0 874 84.7
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 878 84.1
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 880 83.1
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1501.1 874 84.7
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 880 84.1
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1498.4 893 83.1
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 874 83.8
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 874 84.4
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 903 81.8
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 907 82.0
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 880 83.6
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 874 83.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1491.5 890 83.1
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 878 83.1
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 890 82.6
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 875 83.9
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 880 83.6
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 878 83.5
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1483.8 891 81.8
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1483.4 874 83.9
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 873 82.6
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 877 82.9
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1481.5 874 82.6
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 873 82.7
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 880 83.1
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 878 82.9
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 874 82.7
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 883 83.2
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1477.2 857 84.2
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1476.1 877 82.4
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 874 83.5
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 883 81.7
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 883 81.7
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1472.2 880 81.8
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 874 83.1
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1471.1 880 81.8
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 854 85.4
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 883 81.5
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 886 81.4
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 878 81.8
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 877 81.8
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 873 82.1
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1463.4 880 81.7
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1463.0 880 82.0
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1462.2 883 81.1
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 874 81.9
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 857 83.9
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 878 81.3
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 877 81.5
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 877 81.5
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1456.8 877 81.2
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1455.3 877 81.2
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1453.7 874 81.5
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1453.3 873 81.1
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1453.3 844 84.5
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1452.6 862 82.6
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1452.2 843 84.6
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1449.9 878 80.5
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1449.5 874 80.5
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 878 80.5
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 882 81.2
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1447.2 878 80.5
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 884 80.5
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 878 80.4
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1446.0 873 80.9
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1445.3 875 80.1
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1444.1 858 82.2
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 874 80.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1439.5 875 80.0
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1437.6 880 81.2
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1432.9 864 80.6
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1427.5 853 82.8
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1427.5 839 83.6
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1423.3 926 78.1
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1422.9 858 81.0
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 891 78.5
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 858 81.2
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1417.9 880 80.0
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1413.7 874 78.9
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1411.0 880 78.0
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1407.1 903 77.9
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1406.7 844 81.2
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1383.2 879 76.3
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1383.2 895 78.4
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1379.4 866 78.3
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1373.6 978 72.2
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1369.0 882 77.8
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1366.7 880 77.5
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1365.5 872 76.6
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1360.5 865 77.6
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1360.1 873 75.9
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1359.4 878 75.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1345.5 774 85.0
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1339.3 823 79.7
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1337.0 876 76.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1333.9 881 75.8
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1320.1 903 74.1
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1319.7 803 79.7
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1305.0 803 81.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1278.5 888 74.7
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1258.4 880 74.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1248.4 875 73.0
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1221.8 720 83.3
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1204.9 779 77.2
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1181.0 730 78.8
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1176.0 857 67.4
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1176.0 877 68.6
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1170.2 875 66.6
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 6.7e-309 1063.9 633 82.0
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.0e-304 1050.0 884 60.1
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 8.8e-293 1010.4 581 84.2
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.1e-263 913.7 555 80.5
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 5.9e-257 891.3 908 53.6
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.3e-208 729.9 457 78.8
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.6e-206 723.8 506 73.5
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.9e-205 718.4 433 81.3
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.5e-186 655.6 452 73.7
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 5.7e-183 645.6 407 78.4
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 6.3e-182 642.1 744 49.2
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 4.1e-165 586.3 471 66.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-155 553.9 338 80.2
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 3.6e-137 493.4 391 65.7
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 4.4e-135 486.5 296 80.4
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.1e-108 397.9 423 53.2
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-101 374.8 316 63.6
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 9.6e-90 335.9 219 75.8
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 8.4e-86 322.8 266 63.5
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-63 248.1 227 60.8
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 3.0e-59 234.6 151 75.5
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-58 231.5 216 57.4
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.3e-46 192.6 119 78.2
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 9.1e-40 169.9 267 41.2
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 8.5e-38 163.3 119 68.9
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-33 148.7 86 82.6
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 4.7e-28 131.0 81 77.8
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 1.4e-27 129.4 83 74.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.8e-27 127.1 90 66.7
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 8.3e-25 120.2 428 27.1
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 8.6e-22 110.2 95 63.2
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 3.3e-21 108.2 130 50.0
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.2e-18 99.8 56 76.8
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 2.7e-15 88.6 60 66.7
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 8.9e-11 73.6 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-10 73.2 49 73.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 2.9e-09 68.6 43 69.8
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.9e-09 68.6 47 68.1
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 4.9e-09 67.8 63 57.1
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-08 65.9 43 76.7
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 3.2e-08 65.1 40 75.0
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 3.5e-07 61.6 43 67.4


User provided reference genes

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