Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.1e-37 159.5 77 100.0
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.5e-23 111.7 59 86.4
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 5.3e-21 104.0 47 100.0
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 7.9e-17 90.1 50 82.0
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.9e-17 90.1 50 82.0
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.9e-17 90.1 50 82.0
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.9e-17 90.1 50 82.0
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.0e-16 89.7 50 84.0
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 1.0e-16 89.7 50 84.0
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 3.0e-16 88.2 50 84.0
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 6.7e-16 87.0 52 80.8
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 6.7e-16 87.0 50 80.0
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.5e-15 85.9 50 76.0
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.9e-15 85.5 50 76.0
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.9e-15 85.5 52 78.8
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 2.5e-15 85.1 50 80.0
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 3.3e-15 84.7 52 78.8
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 3.3e-15 84.7 52 78.8
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 4.3e-15 84.3 48 77.1
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 7.4e-15 83.6 50 78.0
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 7.4e-15 83.6 50 76.0
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 7.4e-15 83.6 50 76.0
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 7.4e-15 83.6 50 76.0
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 1.3e-14 82.8 50 76.0
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.3e-14 82.8 50 76.0
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 1.3e-14 82.8 50 72.0
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.3e-14 82.8 50 74.0
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 1.3e-14 82.8 55 67.3
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.6e-14 82.4 50 74.0
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.2e-14 82.0 50 76.0
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 2.8e-14 81.6 50 74.0
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 3.7e-14 81.3 50 74.0
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 3.7e-14 81.3 50 74.0
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 4.8e-14 80.9 50 72.0
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 6.3e-14 80.5 51 74.5
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 8.2e-14 80.1 52 71.2
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.1e-13 79.7 48 75.0
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 1.1e-13 79.7 52 71.2
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 1.4e-13 79.3 46 76.1
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.4e-13 79.3 51 72.5
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 1.4e-13 79.3 46 76.1
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 1.4e-13 79.3 50 72.0
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 1.4e-13 79.3 50 72.0
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 1.4e-13 79.3 49 75.5
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 1.8e-13 79.0 47 76.6
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.8e-13 79.0 50 72.0
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.8e-13 79.0 47 76.6
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.8e-13 79.0 52 69.2
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.4e-13 78.6 50 72.0
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 2.4e-13 78.6 52 69.2
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 2.4e-13 78.6 52 73.1
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.4e-13 78.6 47 76.6
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 2.4e-13 78.6 53 67.9
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 3.1e-13 78.2 50 68.0
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 3.1e-13 78.2 50 72.0
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 3.1e-13 78.2 50 70.0
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 3.1e-13 78.2 46 76.1
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 4.1e-13 77.8 50 70.0
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 4.1e-13 77.8 46 71.7
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 4.1e-13 77.8 52 67.3
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 4.1e-13 77.8 48 70.8
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 5.3e-13 77.4 46 76.1
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 5.3e-13 77.4 46 76.1
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 5.3e-13 77.4 46 76.1
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 5.3e-13 77.4 50 68.0
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 5.3e-13 77.4 52 67.3
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 5.3e-13 77.4 50 72.0
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 5.3e-13 77.4 50 72.0
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 6.9e-13 77.0 50 74.0
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 9.1e-13 76.6 52 65.4
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 9.1e-13 76.6 52 65.4
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 9.1e-13 76.6 52 67.3
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 9.1e-13 76.6 50 70.0
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 1.2e-12 76.3 50 68.0
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.5e-12 75.9 50 70.0
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 2.0e-12 75.5 48 72.9
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 2.0e-12 75.5 50 66.0
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 2.0e-12 75.5 52 65.4
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 3.4e-12 74.7 50 64.0
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 4.5e-12 74.3 46 69.6
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 4.5e-12 74.3 46 69.6
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 4.5e-12 74.3 46 69.6
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 4.5e-12 74.3 50 72.0
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 5.9e-12 73.9 49 69.4
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 7.7e-12 73.6 50 68.0
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 7.7e-12 73.6 47 70.2
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 7.7e-12 73.6 47 66.0
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 1.7e-11 72.4 50 70.0
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 8.5e-11 70.1 53 67.9
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 2.5e-10 68.6 48 66.7
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 5.5e-10 67.4 47 61.7
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.2e-09 66.2 46 65.2
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 2.7e-09 65.1 46 63.0
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 2.7e-09 65.1 46 63.0
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 4.6e-09 64.3 47 61.7
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 3.9e-08 61.2 49 63.3
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 3.9e-08 61.2 49 63.3
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 4.4e-07 57.8 49 51.0
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 1.3e-06 56.2 49 49.0
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 2.2e-06 55.5 43 53.5
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 6.3e-06 53.9 33 69.7


User provided reference genes

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