Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035753.2 Cucumis melo HOM05D004529 ORTHO05D005884 8.5e-122 440.3 209 100.0
CsaV3_1G007540 Cucumis sativus L. HOM05D004529 ORTHO05D005884 5.6e-73 278.1 176 80.7
ClCG01G014790 Citrullus lanatus HOM05D004529 ORTHO05D005884 7.8e-67 257.7 174 75.3
Prupe.5G240600 Prunus persica HOM05D004529 ORTHO05D005884 6.2e-48 194.9 181 58.0
Duzib177G0816 Durio zibethinus HOM05D004529 ORTHO05D005884 8.9e-47 191.0 182 57.7
MD14G1242900 Malus domestica HOM05D004529 ORTHO05D005884 3.4e-46 189.1 182 58.2
Dinv06405 Davidia involucrata HOM05D004529 ORTHO05D005884 4.4e-46 188.7 177 56.5
Dinv11730 Davidia involucrata HOM05D004529 ORTHO05D005884 3.8e-45 185.7 181 54.7
TWI81G0141 Tripterygium wilfordii HOM05D004529 ORTHO05D005884 4.9e-45 185.3 180 54.4
RcHm_v2.0_Chr7g0177561 Rosa chinensis HOM05D004529 ORTHO05D005884 8.4e-45 184.5 181 54.7
MD06G1235900 Malus domestica HOM05D004529 ORTHO05D005884 1.4e-44 183.7 182 55.5
Gohir.D13G158400 Gossypium hirsutum HOM05D004529 ORTHO05D005884 2.4e-44 183.0 187 53.5
Gorai.013G179100 Gossypium raimondii HOM05D004529 ORTHO05D005884 2.4e-44 183.0 187 53.5
Potri.004G068700 Populus trichocarpa HOM05D004529 ORTHO05D005884 3.2e-44 182.6 180 55.0
RcHm_v2.0_Chr7g0177041 Rosa chinensis HOM05D004529 ORTHO05D005884 5.4e-44 181.8 181 55.8
Thecc.05G197800 Theobroma cacao HOM05D004529 ORTHO05D005884 5.4e-44 181.8 182 54.4
FvH4_5g18040 Fragaria vesca HOM05D004529 ORTHO05D005884 7.1e-44 181.4 180 55.6
FAN08G2030 Fragaria x ananassa HOM05D004529 ORTHO05D005884 7.1e-44 181.4 180 55.6
FAN18G3802 Fragaria x ananassa HOM05D004529 ORTHO05D005884 7.1e-44 181.4 180 55.6
COL.COLO4_08720 Corchorus olitorius HOM05D004529 ORTHO05D005884 9.2e-44 181.0 204 49.5
Gohir.A13G153800 Gossypium hirsutum HOM05D004529 ORTHO05D005884 9.2e-44 181.0 183 54.1
FAN04G1556 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.2e-43 180.6 180 55.0
QL10p034152 Quercus lobata HOM05D004529 ORTHO05D005884 1.6e-43 180.3 181 54.1
Sabra04G0046400 Salix brachista HOM05D004529 ORTHO05D005884 3.5e-43 179.1 180 53.9
Lj2g0011080 Lotus japonicus HOM05D004529 ORTHO05D005884 4.6e-43 178.7 179 54.2
Actinidia34683 Actinidia chinensis HOM05D004529 ORTHO05D005884 7.8e-43 177.9 175 55.4
Duzib128G0682 Durio zibethinus HOM05D004529 ORTHO05D005884 7.8e-43 177.9 179 55.3
Medtr6g077930 Medicago truncatula HOM05D004529 ORTHO05D005884 7.8e-43 177.9 179 55.9
Psat0s1805g0040 Pisum sativum HOM05D004529 ORTHO05D005884 7.8e-43 177.9 179 55.3
Haze_18337 Corylus avellana HOM05D004529 ORTHO05D005884 1.3e-42 177.2 181 54.1
Atru.chr9.71 Acer truncatum HOM05D004529 ORTHO05D005884 1.7e-42 176.8 181 54.1
TAR629G0199 Trochodendron aralioides HOM05D004529 ORTHO05D005884 1.7e-42 176.8 179 54.2
Peaxi162Scf00171g00234 Petunia axillaris HOM05D004529 ORTHO05D005884 3.0e-42 176.0 178 51.1
Rhsim08G0124700 Rhododendron simsii HOM05D004529 ORTHO05D005884 3.9e-42 175.6 183 54.1
GSVIVG01024252001 Vitis vinifera HOM05D004529 ORTHO05D005884 3.9e-42 175.6 181 52.5
Glyma.16G212800 Glycine max HOM05D004529 ORTHO05D005884 8.7e-42 174.5 178 53.4
arahy.Tifrunner.gnm1.ann1.FEKM9F Arachis hypogaea HOM05D004529 ORTHO05D005884 1.1e-41 174.1 179 54.2
Lalb_Chr24g0398601 Lupinus albus HOM05D004529 ORTHO05D005884 1.1e-41 174.1 179 54.2
arahy.Tifrunner.gnm1.ann1.1UV8VN Arachis hypogaea HOM05D004529 ORTHO05D005884 1.5e-41 173.7 179 54.2
CANSAT64G3027 Cannabis sativa HOM05D004529 ORTHO05D005884 2.5e-41 172.9 177 53.1
TAR629G2105 Trochodendron aralioides HOM05D004529 ORTHO05D005884 2.5e-41 172.9 179 53.6
PGR083G0180 Punica granatum HOM05D004529 ORTHO05D005884 4.3e-41 172.2 178 53.4
Glyma.09G164300 Glycine max HOM05D004529 ORTHO05D005884 5.6e-41 171.8 179 53.6
Lj5A167G40 Lonicera japonica HOM05D004529 ORTHO05D005884 7.3e-41 171.4 174 54.6
Lalb_Chr22g0354001 Lupinus albus HOM05D004529 ORTHO05D005884 7.3e-41 171.4 179 53.6
Potri.017G152601 Populus trichocarpa HOM05D004529 ORTHO05D005884 7.3e-41 171.4 180 52.2
vmacro17741 Vaccinium macrocarpon HOM05D004529 ORTHO05D005884 7.3e-41 171.4 178 55.1
Ca_27163_v3 Cicer arietinum L. HOM05D004529 ORTHO05D005884 1.3e-40 170.6 179 52.5
MBI06_g11152_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 1.3e-40 170.6 185 49.2
Ciclev10018551m.g Citrus clementina HOM05D004529 ORTHO05D005884 3.6e-40 169.1 181 51.4
TPR.G19877 Trifolium pratense HOM05D004529 ORTHO05D005884 3.6e-40 169.1 179 54.2
MBI03_g26653_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 1.1e-39 167.5 181 49.2
Phvul.004G138850 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 1.1e-39 167.5 180 52.8
Lalb_Chr14g0370211 Lupinus albus HOM05D004529 ORTHO05D005884 1.4e-39 167.2 179 52.0
Nitab4.5_0003040g0050 Nicotiana tabacum HOM05D004529 ORTHO05D005884 2.4e-39 166.4 177 49.2
FvH4_5g18430 Fragaria vesca HOM05D004529 ORTHO05D005884 3.1e-39 166.0 184 52.7
FAN18G1654 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.1e-39 166.0 184 52.7
FAN08G1550 Fragaria x ananassa HOM05D004529 ORTHO05D005884 5.3e-39 165.2 184 52.7
Peaxi162Scf00643g00541 Petunia axillaris HOM05D004529 ORTHO05D005884 5.3e-39 165.2 181 47.5
FAN13G2071 Fragaria x ananassa HOM05D004529 ORTHO05D005884 6.9e-39 164.9 184 51.6
CAN.G929.20 Capsicum annuum HOM05D004529 ORTHO05D005884 2.0e-38 163.3 179 52.0
Sabra17G0125600 Salix brachista HOM05D004529 ORTHO05D005884 2.6e-38 162.9 180 50.0
VMungo0464G1978 Vigna mungo HOM05D004529 ORTHO05D005884 2.6e-38 162.9 179 50.8
FAN13G3043 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.4e-38 162.5 170 54.1
Gohir.A13G089790 Gossypium hirsutum HOM05D004529 ORTHO05D005884 3.4e-38 162.5 174 54.0
PGSC0003DMG400010150 Solanum tuberosum HOM05D004529 ORTHO05D005884 3.4e-38 162.5 178 50.0
Solyc03g098630.4 Solanum lycopersicum HOM05D004529 ORTHO05D005884 9.9e-38 161.0 175 49.7
Sopen03g029340 Solanum pennellii HOM05D004529 ORTHO05D005884 9.9e-38 161.0 175 49.7
VMungo0464G0747 Vigna mungo HOM05D004529 ORTHO05D005884 9.9e-38 161.0 179 49.7
Eucgr.H00653 Eucalyptus grandis HOM05D004529 ORTHO05D005884 1.7e-37 160.2 185 48.1
CSS0033935 Camellia sinensis var. sinensis HOM05D004529 ORTHO05D005884 2.2e-37 159.8 166 53.6
CDE05G3012 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 4.2e-36 155.6 181 49.2
Nitab4.5_0000033g0370 Nicotiana tabacum HOM05D004529 ORTHO05D005884 2.1e-35 153.3 181 47.0
ATR0618G236 Amborella trichopoda HOM05D004529 ORTHO05D005884 2.3e-34 149.8 178 50.0
MBI02_g39755_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 8.7e-34 147.9 169 47.3
Cfa014497 Carpinus fangiana HOM05D004529 ORTHO05D005884 2.1e-32 143.3 182 45.1
Cfa014498 Carpinus fangiana HOM05D004529 ORTHO05D005884 2.8e-32 142.9 182 45.6
Haze_13045 Corylus avellana HOM05D004529 ORTHO05D005884 2.8e-32 142.9 182 45.1
CAN.G65.75 Capsicum annuum HOM05D004529 ORTHO05D005884 8.1e-32 141.4 183 42.6
DCAR_011683 Daucus carota HOM05D004529 ORTHO05D005884 8.1e-32 141.4 194 42.3
Gohir.D13G093200 Gossypium hirsutum HOM05D004529 ORTHO05D005884 2.4e-31 139.8 133 57.9
FAN02G0641 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.1e-31 139.4 173 43.9
RcHm_v2.0_Chr2g0161201 Rosa chinensis HOM05D004529 ORTHO05D005884 4.0e-31 139.0 176 44.9
TAR627G0950 Trochodendron aralioides HOM05D004529 ORTHO05D005884 4.0e-31 139.0 183 44.8
FAN09G3058 Fragaria x ananassa HOM05D004529 ORTHO05D005884 6.9e-31 138.3 173 44.5
FvH4_6g44320 Fragaria vesca HOM05D004529 ORTHO05D005884 9.0e-31 137.9 173 43.9
FAN14G2835 Fragaria x ananassa HOM05D004529 ORTHO05D005884 9.0e-31 137.9 173 43.9
Nitab4.5_0000782g0040 Nicotiana tabacum HOM05D004529 ORTHO05D005884 1.5e-30 137.1 137 51.1
FAN05G1920 Fragaria x ananassa HOM05D004529 ORTHO05D005884 7.6e-30 134.8 173 43.4
GSVIVG01000446001 Vitis vinifera HOM05D004529 ORTHO05D005884 7.6e-30 134.8 186 41.4
Sc21g0002160 Simmondsia chinensis HOM05D004529 ORTHO05D005884 9.9e-30 134.4 176 42.6
Sopen06g028600 Solanum pennellii HOM05D004529 ORTHO05D005884 1.7e-29 133.7 159 45.3
GSVIVG01029323001 Vitis vinifera HOM05D004529 ORTHO05D005884 1.7e-29 133.7 169 45.6
MD17G1087100 Malus domestica HOM05D004529 ORTHO05D005884 2.9e-29 132.9 163 44.8
Sopen06g028620 Solanum pennellii HOM05D004529 ORTHO05D005884 1.1e-28 131.0 159 45.3
PSO675G1505 Papaver somniferum HOM05D004529 ORTHO05D005884 1.4e-28 130.6 180 42.8
PSO541G4256 Papaver somniferum HOM05D004529 ORTHO05D005884 1.9e-28 130.2 180 42.8
Hund01213 Selenicereus undatus HOM05D004529 ORTHO05D005884 1.9e-28 130.2 166 45.2
PSO063G4972 Papaver somniferum HOM05D004529 ORTHO05D005884 3.2e-28 129.4 195 42.6
PSO782G2500 Papaver somniferum HOM05D004529 ORTHO05D005884 7.1e-28 128.3 179 43.6
Prupe.3G227600 Prunus persica HOM05D004529 ORTHO05D005884 9.3e-28 127.9 177 42.4
Dinv02574 Davidia involucrata HOM05D004529 ORTHO05D005884 1.2e-27 127.5 167 41.3
Thecc.02G167600 Theobroma cacao HOM05D004529 ORTHO05D005884 1.6e-27 127.1 168 41.7
Dinv02572 Davidia involucrata HOM05D004529 ORTHO05D005884 3.5e-27 125.9 164 42.7
CDE02G0511 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 4.6e-27 125.6 160 42.5
RcHm_v2.0_Chr1g0318141 Rosa chinensis HOM05D004529 ORTHO05D005884 4.6e-27 125.6 132 53.8
HPP92_022512 Vanilla planifolia HOM05D004529 ORTHO05D001371 6.0e-27 125.2 179 40.8
Zm00001eb271850 Zea mays HOM05D004529 ORTHO05D005884 2.3e-26 123.2 174 42.5
Phvul.L001671 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 3.9e-26 122.5 109 57.8
Potri.013G149400 Populus trichocarpa HOM05D004529 ORTHO05D005884 8.7e-26 121.3 163 42.3
Zm00001eb198730 Zea mays HOM05D004529 ORTHO05D005884 4.3e-25 119.0 183 41.0
Os08g0100600 Oryza sativa ssp. japonica HOM05D004529 ORTHO05D005884 6.2e-24 115.2 167 42.5
Sabra19G0119900 Salix brachista HOM05D004529 ORTHO05D005884 5.3e-23 112.1 185 36.2
Sabra19G0134100 Salix brachista HOM05D004529 ORTHO05D005884 5.3e-23 112.1 185 36.2
Cpa.g.sc168.9 Carica papaya HOM05D004529 ORTHO05D005884 9.0e-23 111.3 106 54.7
CDE08G0908 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 9.0e-23 111.3 174 39.1
Atru.chr6.3093 Acer truncatum HOM05D004529 ORTHO05D005884 2.0e-22 110.2 181 38.7
CDE04G1759 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 4.5e-22 109.0 178 38.8
Sabra19G0119700 Salix brachista HOM05D004529 ORTHO05D005884 1.3e-21 107.5 185 35.7
Sabra19G0134300 Salix brachista HOM05D004529 ORTHO05D005884 1.3e-21 107.5 185 35.7
Ciclev10018263m.g Citrus clementina HOM05D004529 ORTHO05D005884 6.5e-21 105.1 167 38.9
Zm00001eb261400 Zea mays HOM05D004529 ORTHO05D005884 6.0e-19 98.6 181 35.4
Mapoly0005s0070 Marchantia polymorpha HOM05D004529 ORTHO05D000444 1.8e-18 97.1 165 36.4
Os06g0729500 Oryza sativa ssp. japonica HOM05D004529 ORTHO05D005884 1.5e-17 94.0 122 44.3
Potri.019G119100 Populus trichocarpa HOM05D004529 ORTHO05D005884 2.1e-16 90.1 168 35.7
SMO358G0009 Selaginella moellendorffii HOM05D004529 ORTHO05D005884 4.5e-14 82.4 176 31.8
Sed0013312 Sechium edule HOM05D004529 ORTHO05D005884 7.9e-11 71.6 49 71.4
FAN18G3124 Fragaria x ananassa HOM05D004529 ORTHO05D013847 3.0e-10 69.7 76 52.6
FvH4_5g18461 Fragaria vesca HOM05D004529 ORTHO05D013847 3.9e-10 69.3 78 52.6
Nitab4.5_0000339g0110 Nicotiana tabacum HOM05D004529 ORTHO05D005884 5.1e-10 68.9 50 58.0
TWI18G0522 Tripterygium wilfordii HOM05D004529 ORTHO05D005884 3.3e-09 66.2 106 38.7
Potri.017G151740 Populus trichocarpa HOM05D004529 ORTHO05D005884 7.4e-09 65.1 66 54.5
Cre17.g744797 Chlamydomonas reinhardtii HOM05D004529 ORTHO05D000444 1.1e-07 61.2 94 39.4
Aa31LG10G6100 Aethionema arabicum HOM05D000608 ORTHO05D000444 1.5e-06 57.4 86 43.0
CDE02G0832 Ceratophyllum demersum HOM05D000608 ORTHO05D000444 1.5e-06 57.4 111 36.0
Sp7g14560 Schrenkiella parvula HOM05D000608 ORTHO05D000444 1.5e-06 57.4 83 43.4
PGSC0003DMG400045819 Solanum tuberosum HOM05D004529 ORTHO05D005884 2.0e-06 57.0 175 30.3
THA.LOC104824154 Tarenaya hassleriana HOM05D000608 ORTHO05D000444 3.4e-06 56.2 94 40.4
PGR031G3314 Punica granatum HOM05D000608 ORTHO05D000444 5.9e-06 55.5 112 33.0
CARHR182420 Cardamine hirsuta HOM05D000608 ORTHO05D000444 7.7e-06 55.1 130 31.5
Sed0027964 Sechium edule HOM05D000608 ORTHO05D000444 7.7e-06 55.1 85 37.6
Aqoxy2G02852 Aquilegia oxysepala HOM05D000608 ORTHO05D000444 1.0e-05 54.7 91 40.7
BcaC06g32984 Brassica carinata HOM05D000608 ORTHO05D000444 1.0e-05 54.7 89 40.4
CDE08G0882 Ceratophyllum demersum HOM05D000608 ORTHO05D003052 1.0e-05 54.7 112 36.6


User provided reference genes

Program Settings