Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035720.2 Cucumis melo HOM05D002439 ORTHO05D002650 8.6e-31 136.3 69 100.0
CsaV3_1G033450 Cucumis sativus L. HOM05D002439 ORTHO05D008780 3.0e-23 111.3 97 67.0
ClCG03G007830 Citrullus lanatus HOM05D002439 ORTHO05D002650 1.5e-14 82.4 44 90.9
Sabra04G0035400 Salix brachista HOM05D002439 ORTHO05D002650 2.1e-13 78.6 51 72.5
Manes.16G036300 Manihot esculenta HOM05D002439 ORTHO05D002650 3.6e-13 77.8 40 85.0
Potri.011G063900 Populus trichocarpa HOM05D002439 ORTHO05D002650 1.4e-12 75.9 51 70.6
COL.COLO4_31336 Corchorus olitorius HOM05D000001 ORTHO05D008780 2.4e-12 75.1 40 85.0
PGR042G3884 Punica granatum HOM05D002439 ORTHO05D002650 2.4e-12 75.1 51 70.6
Gohir.D05G159100 Gossypium hirsutum HOM05D002439 ORTHO05D002650 4.0e-12 74.3 40 80.0
Gorai.009G164200 Gossypium raimondii HOM05D002439 ORTHO05D002650 4.0e-12 74.3 40 80.0
Thecc.06G174500 Theobroma cacao HOM05D002439 ORTHO05D002650 4.0e-12 74.3 51 66.7
Duzib160G0435 Durio zibethinus HOM05D002439 ORTHO05D002650 1.2e-11 72.8 51 66.7
Eucgr.E02672 Eucalyptus grandis HOM05D002439 ORTHO05D002650 1.5e-11 72.4 39 82.1
Atru.chr10.1708 Acer truncatum HOM05D002439 ORTHO05D002650 3.4e-11 71.2 39 82.1
Cfa000578 Carpinus fangiana HOM05D032084 ORTHO05D002650 3.4e-11 71.2 51 66.7
Phvul.006G177900 Phaseolus vulgaris HOM05D002439 ORTHO05D002650 3.4e-11 71.2 40 77.5
CANSAT35G1245 Cannabis sativa HOM05D002439 ORTHO05D002650 4.5e-11 70.9 39 79.5
Medtr2g015540 Medicago truncatula HOM05D002439 ORTHO05D002650 5.8e-11 70.5 39 79.5
CSS0008217 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 7.6e-11 70.1 44 72.7
Glyma.13G231900 Glycine max HOM05D002439 ORTHO05D002650 7.6e-11 70.1 40 75.0
arahy.Tifrunner.gnm1.ann1.4PQ52P Arachis hypogaea HOM05D002439 ORTHO05D002650 9.9e-11 69.7 40 75.0
arahy.Tifrunner.gnm1.ann1.668WW2 Arachis hypogaea HOM05D002439 ORTHO05D002650 9.9e-11 69.7 40 75.0
arahy.Tifrunner.gnm1.ann1.P3ZWTW Arachis hypogaea HOM05D002439 ORTHO05D002650 9.9e-11 69.7 40 75.0
CANSAT64G1999 Cannabis sativa HOM05D002439 ORTHO05D002650 9.9e-11 69.7 40 77.5
CiPaw.10G057300 Carya illinoinensis HOM05D002439 ORTHO05D002650 9.9e-11 69.7 51 62.7
HanXRQChr04g0116691 Helianthus annuus HOM05D000330 ORTHO05D002650 9.9e-11 69.7 40 75.0
Hma1.2p1_0155F.1_g068350 Hydrangea macrophylla HOM05D002439 ORTHO05D002650 1.3e-10 69.3 40 77.5
Psat1g199640 Pisum sativum HOM05D002439 ORTHO05D002650 1.7e-10 68.9 51 64.7
CiPaw.03G185900 Carya illinoinensis HOM05D002439 ORTHO05D002650 2.2e-10 68.6 51 64.7
MD05G1304200 Malus domestica HOM05D002439 ORTHO05D002650 2.2e-10 68.6 51 62.7
MD10G1283600 Malus domestica HOM05D002439 ORTHO05D002650 2.2e-10 68.6 51 62.7
Psat4g185040 Pisum sativum HOM05D002439 ORTHO05D002650 2.2e-10 68.6 51 64.7
THA.LOC104826225 Tarenaya hassleriana HOM05D002439 ORTHO05D002650 2.9e-10 68.2 40 77.5
EL10Ac9g20879 Beta vulgaris HOM05D002439 ORTHO05D002650 4.9e-10 67.4 39 79.5
Nitab4.5_0012054g0010 Nicotiana tabacum HOM05D002439 ORTHO05D002650 4.9e-10 67.4 42 71.4
CARHR124680 Cardamine hirsuta HOM05D002439 ORTHO05D002650 6.4e-10 67.0 51 64.7
CDE08G0976 Ceratophyllum demersum HOM05D002439 ORTHO05D002650 6.4e-10 67.0 40 75.0
Lj1E686T0 Lonicera japonica HOM05D002439 ORTHO05D002650 6.4e-10 67.0 51 60.8
Lj1E689T0 Lonicera japonica HOM05D002439 ORTHO05D002650 6.4e-10 67.0 51 60.8
CSS0014872 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 8.4e-10 66.6 40 70.0
CSS0024442 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 8.4e-10 66.6 40 70.0
HanXRQChr16g0526291 Helianthus annuus HOM05D002439 ORTHO05D002650 8.4e-10 66.6 40 75.0
Sc21g0003850 Simmondsia chinensis HOM05D002439 ORTHO05D002650 8.4e-10 66.6 51 60.8
GSVIVG01021183001 Vitis vinifera HOM05D000001 ORTHO05D008780 8.4e-10 66.6 51 60.8
CSS0011963 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 1.1e-09 66.2 40 70.0
CSS0044279 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 1.1e-09 66.2 40 70.0
Dinv15465 Davidia involucrata HOM05D002439 ORTHO05D002650 1.1e-09 66.2 40 72.5
PSO541G4514 Papaver somniferum HOM05D002439 ORTHO05D002650 1.1e-09 66.2 39 74.4
Potri.019G090500 Populus trichocarpa HOM05D002439 ORTHO05D002650 1.1e-09 66.2 40 72.5
TPR.G11783 Trifolium pratense HOM05D001155 ORTHO05D001080 1.1e-09 66.2 38 73.7
TWI14G0466 Tripterygium wilfordii HOM05D002439 ORTHO05D002650 1.1e-09 66.2 39 71.8
unitig_747.g21619 Utricularia gibba HOM05D002439 ORTHO05D002650 1.1e-09 66.2 51 60.8
Aa31LG5G5810 Aethionema arabicum HOM05D002439 ORTHO05D002650 1.4e-09 65.9 51 60.8
CSS0010712 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 1.4e-09 65.9 40 72.5
CSS0038402 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 1.4e-09 65.9 51 56.9
Oeu036094.1 Olea europaea HOM05D002439 ORTHO05D002650 1.4e-09 65.9 40 75.0
FAN11G2819 Fragaria x ananassa HOM05D002439 ORTHO05D008780 1.9e-09 65.5 51 56.9
FAN16G0755 Fragaria x ananassa HOM05D002439 ORTHO05D008780 1.9e-09 65.5 51 56.9
FAN28G1289 Fragaria x ananassa HOM05D002439 ORTHO05D002650 1.9e-09 65.5 51 56.9
RcHm_v2.0_Chr5g0010171 Rosa chinensis HOM05D002439 ORTHO05D002650 1.9e-09 65.5 51 58.8
Sopen10g003920 Solanum pennellii HOM05D002439 ORTHO05D002650 1.9e-09 65.5 40 72.5
HPP92_021495 Vanilla planifolia HOM05D002439 ORTHO05D002650 1.9e-09 65.5 44 68.2
BcaB06g28414 Brassica carinata HOM05D002439 ORTHO05D002650 2.4e-09 65.1 40 72.5
BcaB06g28491 Brassica carinata HOM05D002439 ORTHO05D002650 2.4e-09 65.1 40 72.5
A04p23860 Brassica napus HOM05D002439 ORTHO05D002650 2.4e-09 65.1 40 72.5
C04p60360 Brassica napus HOM05D002439 ORTHO05D002650 2.4e-09 65.1 40 72.5
BolC4t27536H Brassica oleracea HOM05D002439 ORTHO05D002650 2.4e-09 65.1 40 72.5
BraA04t17909Z Brassica rapa HOM05D002439 ORTHO05D002650 2.4e-09 65.1 40 72.5
Thhalv10017452m.g Eutrema salsugineum HOM05D002439 ORTHO05D002650 2.4e-09 65.1 40 72.5
FvH4_6g27090 Fragaria vesca HOM05D002439 ORTHO05D002650 2.4e-09 65.1 51 58.8
FAN05G1655 Fragaria x ananassa HOM05D002439 ORTHO05D002650 2.4e-09 65.1 51 58.8
FAN09G4017 Fragaria x ananassa HOM05D002439 ORTHO05D002650 2.4e-09 65.1 51 58.8
FAN14G1604 Fragaria x ananassa HOM05D002439 ORTHO05D002650 2.4e-09 65.1 51 58.8
Prupe.3G124200 Prunus persica HOM05D002439 ORTHO05D002650 2.4e-09 65.1 51 58.8
TWI59G0606 Tripterygium wilfordii HOM05D002439 ORTHO05D002650 2.4e-09 65.1 40 70.0
AL4G26280 Arabidopsis lyrata HOM05D002439 ORTHO05D002650 3.2e-09 64.7 40 72.5
AT2G31090 Arabidopsis thaliana HOM05D002439 ORTHO05D002650 3.2e-09 64.7 40 72.5
CSS0017592 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 3.2e-09 64.7 44 68.2
Carub.0004s1235 Capsella rubella HOM05D002439 ORTHO05D002650 3.2e-09 64.7 40 72.5
FAN21G3542 Fragaria x ananassa HOM05D002439 ORTHO05D002650 3.2e-09 64.7 51 54.9
MD09G1240200 Malus domestica HOM05D002439 ORTHO05D002650 3.2e-09 64.7 51 56.9
SalBow7G0011 Salvia bowleyana HOM05D002439 ORTHO05D002650 3.2e-09 64.7 40 72.5
Ciclev10017362m.g Citrus clementina HOM05D002439 ORTHO05D002650 4.2e-09 64.3 40 70.0
Lj3g0028058 Lotus japonicus HOM05D002439 ORTHO05D002650 4.2e-09 64.3 51 54.9
SalBow7G0474 Salvia bowleyana HOM05D002439 ORTHO05D002650 4.2e-09 64.3 40 67.5
GSVIVG01020672001 Vitis vinifera HOM05D002439 ORTHO05D002650 4.2e-09 64.3 51 60.8
Lalb_Chr24g0400051 Lupinus albus HOM05D002439 ORTHO05D002650 5.4e-09 63.9 51 56.9
MD17G1233200 Malus domestica HOM05D002439 ORTHO05D002650 5.4e-09 63.9 51 56.9
Hund07836 Selenicereus undatus HOM05D002439 ORTHO05D002650 5.4e-09 63.9 40 72.5
Migut.H01454 Erythranthe guttata HOM05D002439 ORTHO05D002650 7.1e-09 63.5 39 69.2
Phvul.011G135700 Phaseolus vulgaris HOM05D002439 ORTHO05D002650 7.1e-09 63.5 51 52.9
Solyc10g008050.2 Solanum lycopersicum HOM05D002439 ORTHO05D002650 7.1e-09 63.5 38 73.7
HanXRQChr16g0526231 Helianthus annuus HOM05D002439 ORTHO05D002650 9.3e-09 63.2 51 58.8
Lj6g0022423 Lotus japonicus HOM05D002439 ORTHO05D002650 9.3e-09 63.2 40 70.0
Os01g0214500 Oryza sativa ssp. japonica HOM05D002439 ORTHO05D002650 1.2e-08 62.8 39 69.2
Os05g0209500 Oryza sativa ssp. japonica HOM05D002439 ORTHO05D002650 1.2e-08 62.8 39 71.8
Rhsim06G0133400 Rhododendron simsii HOM05D002439 ORTHO05D002650 1.2e-08 62.8 40 67.5
RcHm_v2.0_Chr2g0128431 Rosa chinensis HOM05D002439 ORTHO05D002650 1.2e-08 62.8 51 54.9
ATR0602G104 Amborella trichopoda HOM05D002439 ORTHO05D002650 1.6e-08 62.4 39 69.2
Zm00001eb283840 Zea mays HOM05D002439 ORTHO05D002650 1.6e-08 62.4 39 71.8
Cc05_g08100 Coffea canephora HOM05D002439 ORTHO05D002650 2.1e-08 62.0 40 72.5
Lj3g0001457 Lotus japonicus HOM05D002439 ORTHO05D002650 2.1e-08 62.0 51 52.9
Peaxi162Scf00241g00919 Petunia axillaris HOM05D007190 ORTHO05D009130 2.1e-08 62.0 59 50.8
COL.COLO4_36294 Corchorus olitorius HOM05D002439 ORTHO05D002650 2.7e-08 61.6 40 70.0
Phvul.005G096500 Phaseolus vulgaris HOM05D002439 ORTHO05D002650 6.0e-08 60.5 51 51.0
Thecc.01G243900 Theobroma cacao HOM05D002439 ORTHO05D002650 7.9e-08 60.1 51 56.9
Duzib264G1300 Durio zibethinus HOM05D002439 ORTHO05D002650 1.0e-07 59.7 40 65.0
PGR142G3273 Punica granatum HOM05D002439 ORTHO05D002650 1.0e-07 59.7 40 65.0
Actinidia10978 Actinidia chinensis HOM05D002439 ORTHO05D002650 1.3e-07 59.3 51 52.9
Duzib187G0907 Durio zibethinus HOM05D002439 ORTHO05D002650 1.3e-07 59.3 40 67.5
Gohir.D10G112000 Gossypium hirsutum HOM05D002439 ORTHO05D002650 1.8e-07 58.9 40 65.0
Gorai.011G123800 Gossypium raimondii HOM05D002439 ORTHO05D002650 1.8e-07 58.9 40 65.0
Lalb_Chr03g0029851 Lupinus albus HOM05D002439 ORTHO05D002650 2.3e-07 58.5 51 54.9
ECA234G2758 Erigeron canadensis HOM05D002439 ORTHO05D002650 3.0e-07 58.2 51 54.9
Psat7g167440 Pisum sativum HOM05D002439 ORTHO05D002650 3.0e-07 58.2 44 50.0
TPR.G6405 Trifolium pratense HOM05D002439 ORTHO05D002650 3.9e-07 57.8 44 54.5
TWI63G1494 Tripterygium wilfordii HOM05D002439 ORTHO05D002650 3.9e-07 57.8 40 67.5
AL3G53600 Arabidopsis lyrata HOM05D002439 ORTHO05D002650 5.1e-07 57.4 44 54.5
Nitab4.5_0001645g0030 Nicotiana tabacum HOM05D002439 ORTHO05D002650 5.1e-07 57.4 40 57.5
Eucgr.K01099 Eucalyptus grandis HOM05D002439 ORTHO05D002650 6.7e-07 57.0 40 65.0
CARHR111130 Cardamine hirsuta HOM05D002439 ORTHO05D002650 8.7e-07 56.6 44 54.5
Lalb_Chr20g0121301 Lupinus albus HOM05D002439 ORTHO05D002650 8.7e-07 56.6 40 67.5
SEGI_11049 Sequoiadendron giganteum HOM05D002439 ORTHO05D002650 8.7e-07 56.6 34 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1267 Anthoceros agrestis HOM05D002439 ORTHO05D002650 1.1e-06 56.2 57 50.9
BcaC06g36743 Brassica carinata HOM05D002439 ORTHO05D002650 1.1e-06 56.2 44 52.3
A07p00190 Brassica napus HOM05D002439 ORTHO05D002650 1.1e-06 56.2 44 52.3
C07p00480 Brassica napus HOM05D002439 ORTHO05D002650 1.1e-06 56.2 44 52.3
Carub.0003s3504 Capsella rubella HOM05D002439 ORTHO05D002650 1.1e-06 56.2 44 54.5
Cfa014659 Carpinus fangiana HOM05D002439 ORTHO05D002650 1.1e-06 56.2 44 50.0
Prupe.8G118700 Prunus persica HOM05D002439 ORTHO05D002650 1.1e-06 56.2 51 54.9
Sp3g33780 Schrenkiella parvula HOM05D002439 ORTHO05D002650 1.1e-06 56.2 44 52.3
AT2G20562 Arabidopsis thaliana HOM05D002439 ORTHO05D002650 1.5e-06 55.8 40 60.0
CiPaw.03G181400 Carya illinoinensis HOM05D002439 ORTHO05D002650 1.5e-06 55.8 44 54.5
Thhalv10002140m.g Eutrema salsugineum HOM05D002439 ORTHO05D002650 1.5e-06 55.8 44 52.3
Solyc02g077230.3 Solanum lycopersicum HOM05D002439 ORTHO05D002650 1.9e-06 55.5 38 60.5
Sopen02g022120 Solanum pennellii HOM05D002439 ORTHO05D002650 1.9e-06 55.5 38 60.5
Gohir.A10G154100 Gossypium hirsutum HOM05D002439 ORTHO05D002650 2.5e-06 55.1 40 62.5
Cc05_g11680 Coffea canephora HOM05D002439 ORTHO05D002650 3.3e-06 54.7 44 47.7
Haze_13242 Corylus avellana HOM05D002439 ORTHO05D002650 3.3e-06 54.7 44 47.7
Nn1g04354 Nelumbo nucifera HOM05D002439 ORTHO05D002650 3.3e-06 54.7 41 58.5
Nitab4.5_0000376g0190 Nicotiana tabacum HOM05D002439 ORTHO05D002650 3.3e-06 54.7 41 53.7
Nitab4.5_0001645g0020 Nicotiana tabacum HOM05D002439 ORTHO05D002650 3.3e-06 54.7 38 57.9
PGSC0003DMG400022952 Solanum tuberosum HOM05D002439 ORTHO05D002650 3.3e-06 54.7 38 60.5
Eucgr.F03298 Eucalyptus grandis HOM05D002439 ORTHO05D002650 4.3e-06 54.3 44 47.7
RcHm_v2.0_Chr2g0127121 Rosa chinensis HOM05D002439 ORTHO05D002650 5.6e-06 53.9 44 52.3
vmacro11894 Vaccinium macrocarpon HOM05D002439 ORTHO05D002650 7.4e-06 53.5 44 50.0
ClCG00G000670 Citrullus lanatus HOM05D002439 ORTHO05D002650 9.6e-06 53.1 44 50.0
Sabra11G0100600 Salix brachista HOM05D002439 ORTHO05D002650 9.6e-06 53.1 44 50.0


User provided reference genes

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