Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035686.2 Cucumis melo HOM05D007110 ORTHO05D000592 9.5e-35 150.6 72 100.0
MELO3C028463.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.1e-25 119.0 60 98.3
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 1.7e-23 113.2 60 93.3
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.9e-23 112.5 56 98.2
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-22 110.2 56 96.4
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.1e-21 106.3 61 82.0
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.7e-21 105.9 58 87.9
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.0e-20 104.0 61 80.3
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-20 103.6 59 86.4
MELO3C035111.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-17 93.6 49 91.8
MELO3C029948.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-17 93.2 57 84.2
Sed0025775 Sechium edule HOM05D007110 ORTHO05D000592 4.9e-15 85.1 58 60.3
MELO3C034746.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-14 84.0 56 66.1
MELO3C034178.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.4e-14 82.8 47 83.0
MELO3C032622.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.2e-14 82.4 58 63.8
MELO3C033823.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.2e-14 82.4 59 62.7
MELO3C032739.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.2e-14 82.0 56 66.1
MELO3C033275.2 Cucumis melo HOM05D013245 ORTHO05D000592 4.2e-14 82.0 60 61.7
Sed0014210 Sechium edule HOM05D007110 ORTHO05D000592 5.4e-14 81.6 58 58.6
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 7.1e-14 81.3 59 55.9
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-13 80.5 61 59.0
CsaV3_1G030690 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.1e-13 79.7 60 58.3
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.5e-13 79.0 53 66.0
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.9e-13 77.8 56 60.7
MELO3C028521.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.8e-12 76.6 58 58.6
MELO3C030650.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.3e-12 76.3 61 57.4
Sed0025384 Sechium edule HOM05D007110 ORTHO05D000592 1.5e-11 73.6 59 50.8
MELO3C029581.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-11 72.4 42 83.3
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-10 70.5 50 62.0
MELO3C034518.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.8e-10 69.3 61 50.8
MELO3C031391.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.7e-10 68.9 55 61.8
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 6.2e-10 68.2 63 49.2
MELO3C029685.2 Cucumis melo HOM05D000539 ORTHO05D016267 8.1e-10 67.8 35 88.6
Sed0011074 Sechium edule HOM05D007110 ORTHO05D000592 8.1e-10 67.8 61 55.7
MELO3C031428.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-09 66.6 47 63.8
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 2.4e-09 66.2 63 44.4
MELO3C030038.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-09 66.2 35 85.7
MELO3C032097.2 Cucumis melo HOM05D000433 ORTHO05D000443 2.4e-09 66.2 57 61.4
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 3.1e-09 65.9 64 46.9
MELO3C033921.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.1e-09 65.9 44 61.4
MELO3C032570.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.0e-09 65.5 34 88.2
MELO3C033953.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.0e-09 65.5 42 73.8
MELO3C027996.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.2e-08 63.9 67 43.3
RcHm_v2.0_Chr1g0352291 Rosa chinensis HOM05D000539 ORTHO05D000233 1.2e-08 63.9 61 45.9
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 1.5e-08 63.5 60 46.7
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 1.5e-08 63.5 60 46.7
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.0e-08 63.2 72 41.7
MD01G1047900 Malus domestica HOM05D000539 ORTHO05D000592 2.0e-08 63.2 60 41.7
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 2.0e-08 63.2 60 45.0
MELO3C035035.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.6e-08 62.8 67 41.8
MELO3C029549.2 Cucumis melo HOM05D000002 ORTHO05D000001 3.4e-08 62.4 60 61.7
MELO3C034519.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.4e-08 62.4 66 42.4
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 3.4e-08 62.4 61 49.2
MELO3C027818.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.5e-08 62.0 66 42.4
MELO3C029153.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.5e-08 62.0 67 41.8
MELO3C032086.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.5e-08 62.0 54 53.7
vmacro04479 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 4.5e-08 62.0 56 44.6
RcHm_v2.0_Chr3g0494801 Rosa chinensis HOM05D000539 ORTHO05D000592 5.8e-08 61.6 61 44.3
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 7.6e-08 61.2 60 45.0
MELO3C034440.2 Cucumis melo HOM05D007110 ORTHO05D000592 9.9e-08 60.8 58 44.8
RcHm_v2.0_Chr7g0227321 Rosa chinensis HOM05D000539 ORTHO05D000233 9.9e-08 60.8 61 44.3
MELO3C028781.2 Cucumis melo HOM05D000539 ORTHO05D034978 1.3e-07 60.5 32 87.5
CsaV3_UNG238520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.3e-07 60.5 34 79.4
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-07 60.5 61 42.6
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-07 60.5 61 42.6
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.7e-07 60.1 65 41.5
MELO3C031450.2 Cucumis melo HOM05D037892 ORTHO05D000592 1.7e-07 60.1 54 55.6
MELO3C032631.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.7e-07 60.1 60 40.0
MELO3C033385.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.7e-07 60.1 39 69.2
CsaV3_6G018650 Cucumis sativus L. HOM05D047073 ORTHO05D034978 1.7e-07 60.1 33 78.8
ECA232G2064 Erigeron canadensis HOM05D000539 ORTHO05D000592 1.7e-07 60.1 62 45.2
MELO3C028238.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.2e-07 59.7 56 44.6
SHI06731 Sapria himalayana HOM05D007110 ORTHO05D000233 2.2e-07 59.7 57 50.9
MELO3C034491.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.9e-07 59.3 58 41.4
Sed0000174 Sechium edule HOM05D000539 ORTHO05D000592 2.9e-07 59.3 63 44.4
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-07 58.9 51 56.9
MELO3C030224.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.8e-07 58.9 67 41.8
MELO3C031430.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.8e-07 58.9 56 44.6
MELO3C032064.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.8e-07 58.9 60 41.7
MELO3C034970.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.8e-07 58.9 66 39.4
MELO3C031423.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.9e-07 58.5 50 60.0
Lsat_1_v5_gn_4_88020 Lactuca sativa HOM05D000539 ORTHO05D000592 4.9e-07 58.5 63 41.3
Rhsim03G0043700 Rhododendron simsii HOM05D000539 ORTHO05D000592 4.9e-07 58.5 56 39.3
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 4.9e-07 58.5 56 39.3
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 4.9e-07 58.5 56 39.3
RhsimUnG0040200 Rhododendron simsii HOM05D000539 ORTHO05D000592 4.9e-07 58.5 56 39.3
Sed0004440 Sechium edule HOM05D000539 ORTHO05D000592 4.9e-07 58.5 63 44.4
Sed0014995 Sechium edule HOM05D000539 ORTHO05D000592 4.9e-07 58.5 63 44.4
Sed0019579 Sechium edule HOM05D000539 ORTHO05D000592 4.9e-07 58.5 63 44.4
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 6.4e-07 58.2 61 42.6
CSS0026465 Camellia sinensis var. sinensis HOM05D000539 ORTHO05D000233 8.4e-07 57.8 55 41.8
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 8.4e-07 57.8 61 44.3
RcHm_v2.0_Chr2g0145261 Rosa chinensis HOM05D000539 ORTHO05D000233 8.4e-07 57.8 61 42.6
Sed0011271 Sechium edule HOM05D000539 ORTHO05D000592 8.4e-07 57.8 63 44.4
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 8.4e-07 57.8 61 45.9
MELO3C028441.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-06 57.4 46 52.2
MELO3C032025.2 Cucumis melo HOM05D013245 ORTHO05D000592 1.1e-06 57.4 35 74.3
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.1e-06 57.4 53 41.5
Rhsim05G0213000 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.1e-06 57.4 54 40.7
MELO3C034500.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.4e-06 57.0 66 40.9
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 1.4e-06 57.0 61 44.3
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-06 57.0 61 44.3
RcHm_v2.0_Chr6g0250691 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-06 57.0 61 42.6
MELO3C029173.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.9e-06 56.6 46 54.3
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-06 56.6 53 41.5
SHI36792 Sapria himalayana HOM05D000616 ORTHO05D000062 1.9e-06 56.6 56 48.2
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-06 56.2 61 41.0
MELO3C034551.2 Cucumis melo HOM05D007110 ORTHO05D000233 2.4e-06 56.2 55 43.6
Lsat_1_v5_gn_4_34001 Lactuca sativa HOM05D000539 ORTHO05D000592 2.4e-06 56.2 57 43.9
PSO170G4584 Papaver somniferum HOM05D000539 ORTHO05D000233 2.4e-06 56.2 61 37.7
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 2.4e-06 56.2 61 37.7
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 2.4e-06 56.2 61 39.3
SHI14002 Sapria himalayana HOM05D000616 ORTHO05D000233 2.4e-06 56.2 54 46.3
MELO3C027681.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.2e-06 55.8 54 42.6
MELO3C032029.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.2e-06 55.8 41 56.1
PSO541G5385 Papaver somniferum HOM05D000539 ORTHO05D000233 3.2e-06 55.8 61 39.3
Rhsim05G0020800 Rhododendron simsii HOM05D000539 ORTHO05D000233 3.2e-06 55.8 57 42.1
SHI38771 Sapria himalayana HOM05D000616 ORTHO05D000233 3.2e-06 55.8 57 47.4
Sed0016665 Sechium edule HOM05D000539 ORTHO05D000592 3.2e-06 55.8 61 44.3
Sed0019626 Sechium edule HOM05D000539 ORTHO05D000592 3.2e-06 55.8 61 44.3
MELO3C029201.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.2e-06 55.5 55 43.6
MELO3C032063.2 Cucumis melo HOM05D013245 ORTHO05D000592 4.2e-06 55.5 51 51.0
DCAR_005074 Daucus carota HOM05D000539 ORTHO05D000592 4.2e-06 55.5 62 41.9
Lsat_1_v5_gn_2_7701 Lactuca sativa HOM05D000539 ORTHO05D000592 4.2e-06 55.5 61 39.3
Lsat_1_v5_gn_5_85761 Lactuca sativa HOM05D011081 ORTHO05D000592 4.2e-06 55.5 61 39.3
SHI38698 Sapria himalayana HOM05D000616 ORTHO05D000233 4.2e-06 55.5 52 51.9
SHI42493 Sapria himalayana HOM05D000616 ORTHO05D000233 4.2e-06 55.5 52 51.9
MELO3C029630.2 Cucumis melo HOM05D000320 ORTHO05D006032 5.5e-06 55.1 49 49.0
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 5.5e-06 55.1 67 35.8
SHI19610 Sapria himalayana HOM05D000616 ORTHO05D000233 5.5e-06 55.1 53 50.9
CSS0023486 Camellia sinensis var. sinensis HOM05D000616 ORTHO05D000233 7.1e-06 54.7 55 40.0
MELO3C033304.2 Cucumis melo HOM05D007110 ORTHO05D000592 7.1e-06 54.7 60 43.3
MELO3C033511.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.1e-06 54.7 61 39.3
SHI19985 Sapria himalayana HOM05D000616 ORTHO05D000233 7.1e-06 54.7 59 44.1
SHI22978 Sapria himalayana HOM05D000616 ORTHO05D000233 7.1e-06 54.7 53 49.1
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 9.3e-06 54.3 56 42.9


User provided reference genes

Program Settings