Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 5.7e-29 130.2 64 100.0
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 7.5e-29 129.8 63 100.0
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 4.9e-28 127.1 63 98.4
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.5e-26 120.9 63 92.1
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 8.6e-25 116.3 63 88.9
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.2e-23 112.5 63 79.4
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.1e-23 111.7 63 81.0
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.1e-23 111.7 63 82.5
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.8e-23 111.3 63 81.0
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.8e-23 111.3 63 81.0
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 8.0e-23 109.8 63 79.4
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.0e-23 109.8 63 81.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 8.0e-23 109.8 63 81.0
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.0e-22 109.4 63 82.5
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.0e-22 109.4 63 82.5
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.4e-22 109.0 63 79.4
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.4e-22 109.0 63 77.8
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.4e-22 109.0 63 79.4
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.4e-22 109.0 63 79.4
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.8e-22 108.6 63 79.4
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.8e-22 108.6 63 79.4
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.8e-22 108.6 63 81.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.8e-22 108.6 63 81.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 3.0e-22 107.8 63 79.4
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.0e-22 107.8 62 82.3
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 4.0e-22 107.5 63 79.4
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 4.0e-22 107.5 63 77.8
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.2e-22 107.1 63 76.2
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 6.8e-22 106.7 63 76.2
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 6.8e-22 106.7 63 79.4
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 8.9e-22 106.3 63 79.4
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 8.9e-22 106.3 63 81.0
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.2e-21 105.9 63 77.8
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.2e-21 105.9 63 76.2
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.2e-21 105.9 63 77.8
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.5e-21 105.5 62 77.4
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.0e-21 105.1 63 73.0
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.0e-21 105.1 63 77.8
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.0e-21 105.1 63 77.8
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.0e-21 105.1 63 77.8
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.0e-21 105.1 63 76.2
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.0e-21 105.1 62 77.4
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.0e-21 105.1 63 77.8
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.6e-21 104.8 62 77.4
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 2.6e-21 104.8 63 77.8
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.6e-21 104.8 63 76.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 3.4e-21 104.4 63 77.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.4e-21 104.4 63 76.2
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 4.4e-21 104.0 63 74.6
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.4e-21 104.0 63 76.2
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.4e-21 104.0 63 76.2
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 4.4e-21 104.0 63 74.6
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.4e-21 104.0 65 76.9
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 5.7e-21 103.6 63 73.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 5.7e-21 103.6 63 76.2
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.7e-21 103.6 64 79.7
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.7e-21 103.6 62 75.8
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 5.7e-21 103.6 63 74.6
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 7.5e-21 103.2 63 76.2
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 9.8e-21 102.8 63 74.6
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 9.8e-21 102.8 63 74.6
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.3e-20 102.4 63 71.4
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.3e-20 102.4 63 73.0
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.3e-20 102.4 63 74.6
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.3e-20 102.4 63 76.2
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.3e-20 102.4 63 73.0
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.3e-20 102.4 63 76.2
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 1.7e-20 102.1 60 80.0
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.7e-20 102.1 64 75.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.7e-20 102.1 62 75.8
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.7e-20 102.1 63 73.0
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.7e-20 102.1 63 73.0
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.7e-20 102.1 63 73.0
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.7e-20 102.1 62 72.6
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.2e-20 101.7 63 74.6
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 2.2e-20 101.7 63 74.6
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.2e-20 101.7 63 73.0
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.2e-20 101.7 63 73.0
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.2e-20 101.7 63 73.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 2.2e-20 101.7 62 77.4
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 2.9e-20 101.3 63 71.4
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.9e-20 101.3 61 77.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.9e-20 101.3 63 74.6
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 2.9e-20 101.3 62 72.6
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 3.7e-20 100.9 63 73.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.7e-20 100.9 62 75.8
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.9e-20 100.5 63 71.4
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 4.9e-20 100.5 60 76.7
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 6.4e-20 100.1 63 71.4
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 6.4e-20 100.1 63 74.6
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 6.4e-20 100.1 63 71.4
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 73.0
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 8.3e-20 99.8 63 71.4
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 8.3e-20 99.8 63 71.4
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 8.3e-20 99.8 61 75.4
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 8.3e-20 99.8 63 71.4
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.1e-19 99.4 63 71.4
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.1e-19 99.4 63 71.4
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-19 99.4 63 69.8
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-19 99.4 63 69.8
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.1e-19 99.4 63 71.4
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.1e-19 99.4 63 71.4
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.1e-19 99.4 62 69.4
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.1e-19 99.4 63 69.8
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.4e-19 99.0 63 69.8
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.4e-19 99.0 63 69.8
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.4e-19 99.0 63 71.4
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 1.4e-19 99.0 63 73.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.4e-19 99.0 62 69.4
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.4e-19 99.0 63 69.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.8e-19 98.6 63 71.4
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 2.4e-19 98.2 63 71.4
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.4e-19 98.2 63 69.8
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.4e-19 98.2 63 69.8
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.4e-19 98.2 61 72.1
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 3.2e-19 97.8 63 69.8
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 3.2e-19 97.8 63 71.4
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.2e-19 97.8 63 69.8
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 4.1e-19 97.4 54 79.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 5.4e-19 97.1 66 72.7
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 5.4e-19 97.1 54 77.8
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 5.4e-19 97.1 63 68.3
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 7.0e-19 96.7 61 65.6
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 1.6e-18 95.5 63 66.7
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.0e-18 95.1 64 70.3
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 2.0e-18 95.1 63 65.1
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 4.6e-18 94.0 61 67.2
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.6e-18 94.0 61 68.9
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.6e-18 94.0 62 67.7
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 7.8e-18 93.2 61 67.2
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 7.8e-18 93.2 61 67.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 7.8e-18 93.2 61 67.2
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.0e-17 92.8 63 68.3
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.0e-17 92.8 54 74.1
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.7e-17 92.0 63 68.3
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.3e-17 91.7 54 72.2
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 3.0e-17 91.3 63 66.7
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 3.0e-17 91.3 63 63.5
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.9e-17 90.9 63 66.7
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.9e-17 90.9 63 66.7
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.5e-16 89.0 63 63.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 2.5e-16 88.2 55 69.1
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.3e-16 87.8 66 69.7
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 4.3e-16 87.4 63 60.3
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 5.6e-16 87.0 64 60.9
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.5e-16 86.3 51 74.5
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.1e-15 85.1 64 67.2
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.1e-15 85.1 62 69.4
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 2.8e-15 84.7 64 62.5
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 8.0e-15 83.2 45 80.0
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.3e-14 81.6 45 75.6
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 8.9e-14 79.7 60 63.3
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 2.6e-13 78.2 55 65.5
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.4e-13 77.4 53 64.2
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.3e-12 75.9 58 60.3
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 2.9e-12 74.7 45 68.9
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.7e-10 68.2 53 52.8
ClCG06G005540 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.5e-08 62.4 35 91.4
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 5.6e-08 60.5 32 75.0
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 4.7e-07 57.4 46 50.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.1e-06 56.2 28 78.6


User provided reference genes

Program Settings