Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035482.2 Cucumis melo HOM05D002135 ORTHO05D002134 6.2e-52 207.2 107 100.0
ClCG05G021560 Citrullus lanatus HOM05D002135 ORTHO05D002134 9.0e-19 97.1 118 53.4
MELO3C012370.2 Cucumis melo HOM05D002135 ORTHO05D002134 2.1e-12 75.9 41 95.1
CsaV3_5G035670 Cucumis sativus L. HOM05D002135 ORTHO05D002134 2.1e-12 75.9 41 95.1
Sed0019679 Sechium edule HOM05D002135 ORTHO05D002134 4.8e-12 74.7 41 92.7
Sed0027309 Sechium edule HOM05D002135 ORTHO05D002134 1.1e-11 73.6 41 92.7
Ciclev10032126m.g Citrus clementina HOM05D002135 ORTHO05D002134 1.5e-10 69.7 41 85.4
Haze_02615 Corylus avellana HOM05D002135 ORTHO05D002134 1.5e-10 69.7 41 85.4
Sc06g0002200 Simmondsia chinensis HOM05D002135 ORTHO05D002134 1.5e-10 69.7 41 85.4
Duzib114G0749 Durio zibethinus HOM05D002135 ORTHO05D002134 4.5e-10 68.2 41 82.9
Glyma.10G202000 Glycine max HOM05D002135 ORTHO05D002134 4.5e-10 68.2 41 82.9
VMungo0720G1897 Vigna mungo HOM05D002135 ORTHO05D002134 4.5e-10 68.2 41 82.9
CiPaw.14G028300 Carya illinoinensis HOM05D002135 ORTHO05D002134 5.8e-10 67.8 41 82.9
AUR62041542 Chenopodium quinoa HOM05D002135 ORTHO05D002134 7.6e-10 67.4 73 56.2
Glyma.20G188400 Glycine max HOM05D002135 ORTHO05D002134 7.6e-10 67.4 41 80.5
Gohir.A10G198900 Gossypium hirsutum HOM05D002135 ORTHO05D002134 7.6e-10 67.4 41 82.9
Hund06747 Selenicereus undatus HOM05D002135 ORTHO05D002134 1.0e-09 67.0 42 78.6
Cfa011220 Carpinus fangiana HOM05D002135 ORTHO05D002134 1.3e-09 66.6 41 82.9
AUR62041530 Chenopodium quinoa HOM05D002135 ORTHO05D002134 1.3e-09 66.6 42 78.6
COL.COLO4_37855 Corchorus olitorius HOM05D002135 ORTHO05D002134 1.3e-09 66.6 41 82.9
Nn6g35053 Nelumbo nucifera HOM05D002135 ORTHO05D002134 1.3e-09 66.6 42 76.2
CiPaw.13G036000 Carya illinoinensis HOM05D002135 ORTHO05D002134 1.7e-09 66.2 41 80.5
Sopen11g003440 Solanum pennellii HOM05D002135 ORTHO05D002134 1.7e-09 66.2 41 82.9
PGSC0003DMG400027316 Solanum tuberosum HOM05D002135 ORTHO05D002134 1.7e-09 66.2 41 82.9
PGR044G0591 Punica granatum HOM05D002135 ORTHO05D002134 2.2e-09 65.9 41 80.5
TWI63G1083 Tripterygium wilfordii HOM05D002135 ORTHO05D002134 2.2e-09 65.9 41 80.5
Manes.07G091833 Manihot esculenta HOM05D002135 ORTHO05D002134 2.9e-09 65.5 41 80.5
Psat0s1649g0040 Pisum sativum HOM05D002135 ORTHO05D002134 2.9e-09 65.5 41 78.0
Cpa.g.sc720.3 Carica papaya HOM05D002135 ORTHO05D002134 3.8e-09 65.1 41 78.0
CAN.G135.66 Capsicum annuum HOM05D002135 ORTHO05D002134 4.9e-09 64.7 41 80.5
Potri.008G026100 Populus trichocarpa HOM05D002135 ORTHO05D002134 4.9e-09 64.7 41 80.5
Potri.010G234300 Populus trichocarpa HOM05D002135 ORTHO05D002134 4.9e-09 64.7 41 80.5
TWI15G0088 Tripterygium wilfordii HOM05D002135 ORTHO05D002134 4.9e-09 64.7 41 78.0
Ah.04g163660 Amaranthus hybridus HOM05D002135 ORTHO05D002134 6.5e-09 64.3 42 73.8
Thecc.10G100700 Theobroma cacao HOM05D002135 ORTHO05D002134 6.5e-09 64.3 41 78.0
TPR.G2548 Trifolium pratense HOM05D002135 ORTHO05D002134 6.5e-09 64.3 41 75.6
MD02G1245100 Malus domestica HOM05D002135 ORTHO05D002134 8.4e-09 63.9 41 78.0
Nitab4.5_0002259g0080 Nicotiana tabacum HOM05D002135 ORTHO05D002134 1.1e-08 63.5 64 60.9
Nitab4.5_0010486g0010 Nicotiana tabacum HOM05D002135 ORTHO05D002134 1.1e-08 63.5 64 60.9
Prupe.2G089600 Prunus persica HOM05D002135 ORTHO05D002134 1.1e-08 63.5 41 78.0
GSVIVG01034716001 Vitis vinifera HOM05D002135 ORTHO05D002134 1.1e-08 63.5 41 78.0
Ca_10490_v3 Cicer arietinum L. HOM05D002135 ORTHO05D002134 1.4e-08 63.2 41 75.6
Lsat_1_v5_gn_2_102720 Lactuca sativa HOM05D002135 ORTHO05D002134 1.4e-08 63.2 42 76.2
MBI17_g11103_MAGBIO Magnolia biondii HOM05D002135 ORTHO05D002134 1.4e-08 63.2 80 48.8
Rhsim03G0109200 Rhododendron simsii HOM05D002135 ORTHO05D002134 1.4e-08 63.2 42 73.8
FvH4_7g06300 Fragaria vesca HOM05D002135 ORTHO05D002134 1.9e-08 62.8 41 78.0
FAN03G0805 Fragaria x ananassa HOM05D002135 ORTHO05D002134 1.9e-08 62.8 41 78.0
FAN06G5107 Fragaria x ananassa HOM05D002135 ORTHO05D002134 1.9e-08 62.8 41 78.0
FAN10G0439 Fragaria x ananassa HOM05D002135 ORTHO05D002134 1.9e-08 62.8 41 78.0
Lj3A932T62 Lonicera japonica HOM05D002135 ORTHO05D002134 1.9e-08 62.8 41 78.0
Phvul.007G105100 Phaseolus vulgaris HOM05D002135 ORTHO05D002134 1.9e-08 62.8 41 78.0
RcHm_v2.0_Chr1g0334131 Rosa chinensis HOM05D002135 ORTHO05D002134 1.9e-08 62.8 41 78.0
Atru.chr12.962 Acer truncatum HOM05D002135 ORTHO05D002134 2.5e-08 62.4 41 70.7
Actinidia18572 Actinidia chinensis HOM05D002135 ORTHO05D002134 2.5e-08 62.4 41 75.6
arahy.Tifrunner.gnm1.ann1.6GZ8LR Arachis hypogaea HOM05D002135 ORTHO05D002134 2.5e-08 62.4 41 75.6
arahy.Tifrunner.gnm1.ann1.GZ0G6J Arachis hypogaea HOM05D002135 ORTHO05D002134 2.5e-08 62.4 41 75.6
Duzib106G1430 Durio zibethinus HOM05D002135 ORTHO05D002134 2.5e-08 62.4 41 75.6
QL04p041010 Quercus lobata HOM05D002135 ORTHO05D002134 2.5e-08 62.4 41 78.0
QL06p020371 Quercus lobata HOM05D002135 ORTHO05D002134 2.5e-08 62.4 41 78.0
EL10Ac4g08639 Beta vulgaris HOM05D002135 ORTHO05D002134 3.2e-08 62.0 42 69.0
Lalb_Chr19g0129291 Lupinus albus HOM05D002135 ORTHO05D002134 3.2e-08 62.0 41 73.2
MSTRG.410 Avicennia marina HOM05D002135 ORTHO05D002134 4.2e-08 61.6 42 73.8
Dinv20844 Davidia involucrata HOM05D002135 ORTHO05D002134 4.2e-08 61.6 41 75.6
vmacro07221 Vaccinium macrocarpon HOM05D002135 ORTHO05D002134 4.2e-08 61.6 42 73.8
ECA232G4985 Erigeron canadensis HOM05D002135 ORTHO05D002134 5.5e-08 61.2 42 71.4
Medtr1g492730 Medicago truncatula HOM05D002135 ORTHO05D002134 5.5e-08 61.2 41 73.2
TAR636G1009 Trochodendron aralioides HOM05D002135 ORTHO05D002134 5.5e-08 61.2 41 68.3
Dinv31293 Davidia involucrata HOM05D002135 ORTHO05D002134 9.3e-08 60.5 41 73.2
Eucgr.J01018 Eucalyptus grandis HOM05D002135 ORTHO05D002134 9.3e-08 60.5 41 78.0
Lj5g0024464 Lotus japonicus HOM05D002135 ORTHO05D002134 9.3e-08 60.5 73 53.4
Oeu015045.1 Olea europaea HOM05D002135 ORTHO05D002134 9.3e-08 60.5 42 73.8
Sabra08G0017700 Salix brachista HOM05D002135 ORTHO05D002134 9.3e-08 60.5 41 75.6
Sabra10G0181600 Salix brachista HOM05D002135 ORTHO05D002134 9.3e-08 60.5 41 78.0
CANSAT56G3456 Cannabis sativa HOM05D002135 ORTHO05D002134 1.2e-07 60.1 41 75.6
MELO3C035111.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-07 59.3 47 68.1
Migut.F01659 Erythranthe guttata HOM05D002135 ORTHO05D002134 2.1e-07 59.3 42 69.0
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 2.7e-07 58.9 30 93.3
HanXRQChr16g0513251 Helianthus annuus HOM05D002135 ORTHO05D002134 2.7e-07 58.9 42 71.4
SGA_v2.0_scaffold62G21513 Striga asiatica HOM05D002135 ORTHO05D002134 2.7e-07 58.9 42 71.4
DCAR_019036 Daucus carota HOM05D002135 ORTHO05D002134 4.6e-07 58.2 41 70.7
VMungo1383G1322 Vigna mungo HOM05D000577 ORTHO05D003389 4.6e-07 58.2 41 70.7
Duzib093G1810 Durio zibethinus HOM05D002135 ORTHO05D002134 7.9e-07 57.4 41 68.3
ECA238G0447 Erigeron canadensis HOM05D002135 ORTHO05D002134 7.9e-07 57.4 42 69.0
SEGI_08830 Sequoiadendron giganteum HOM05D002135 ORTHO05D002134 7.9e-07 57.4 41 65.9
HanXRQChr04g0106651 Helianthus annuus HOM05D002135 ORTHO05D002134 1.0e-06 57.0 42 64.3
CSS0001130 Camellia sinensis var. sinensis HOM05D002135 ORTHO05D002134 1.3e-06 56.6 60 60.0
Cc06_g16410 Coffea canephora HOM05D002135 ORTHO05D002134 1.3e-06 56.6 41 65.9
Gohir.D09G122300 Gossypium hirsutum HOM05D002135 ORTHO05D002134 1.3e-06 56.6 41 65.9
Gorai.006G140100 Gossypium raimondii HOM05D002135 ORTHO05D002134 1.3e-06 56.6 41 65.9
Aqoxy1G00945 Aquilegia oxysepala HOM05D002135 ORTHO05D002134 1.8e-06 56.2 41 68.3
Glyma.11G248900 Glycine max HOM05D002135 ORTHO05D002134 1.8e-06 56.2 39 69.2
Glyma.18G008400 Glycine max HOM05D002135 ORTHO05D002134 1.8e-06 56.2 68 48.5
Gohir.A09G125400 Gossypium hirsutum HOM05D002135 ORTHO05D002134 1.8e-06 56.2 41 65.9
Thecc.05G165800 Theobroma cacao HOM05D002135 ORTHO05D002134 1.8e-06 56.2 41 65.9
CSS0034713 Camellia sinensis var. sinensis HOM05D002135 ORTHO05D002134 2.3e-06 55.8 41 61.0
PSO339G5382 Papaver somniferum HOM05D002135 ORTHO05D002134 2.3e-06 55.8 41 65.9
Phvul.001G260200 Phaseolus vulgaris HOM05D002135 ORTHO05D002134 2.3e-06 55.8 41 65.9
ATR0820G115 Amborella trichopoda HOM05D002135 ORTHO05D002134 3.0e-06 55.5 41 63.4
AagrBONN_evm.TU.Sc2ySwM_362.359 Anthoceros agrestis HOM05D002135 ORTHO05D002134 3.0e-06 55.5 41 65.9
HanXRQChr13g0389281 Helianthus annuus HOM05D002135 ORTHO05D002134 3.0e-06 55.5 41 63.4
Pp3c3_11300 Physcomitrium patens HOM05D002135 ORTHO05D002134 3.0e-06 55.5 56 50.0
QL07p022587 Quercus lobata HOM05D002135 ORTHO05D002134 3.0e-06 55.5 41 63.4
Zm00001eb144440 Zea mays HOM05D002135 ORTHO05D002134 3.0e-06 55.5 39 66.7
CiPaw.09G033700 Carya illinoinensis HOM05D002135 ORTHO05D002134 3.9e-06 55.1 41 63.4
Dinv18106 Davidia involucrata HOM05D002135 ORTHO05D002134 3.9e-06 55.1 41 65.9
ECA248G2751 Erigeron canadensis HOM05D002135 ORTHO05D007591 3.9e-06 55.1 41 63.4
CBR_g16890 Chara braunii HOM05D002135 ORTHO05D002134 5.1e-06 54.7 42 64.3
Ca_16475_v3 Cicer arietinum L. HOM05D000577 ORTHO05D003389 5.1e-06 54.7 41 63.4
Gohir.D10G205600 Gossypium hirsutum HOM05D002135 ORTHO05D002134 5.1e-06 54.7 34 82.4
Gorai.011G230700 Gossypium raimondii HOM05D002135 ORTHO05D002134 5.1e-06 54.7 34 82.4
HanXRQChr01g0009371 Helianthus annuus HOM05D002135 ORTHO05D002134 5.1e-06 54.7 41 63.4
Medtr1g052405 Medicago truncatula HOM05D002135 ORTHO05D002134 5.1e-06 54.7 41 63.4
Oeu033757.1 Olea europaea HOM05D002135 ORTHO05D002134 5.1e-06 54.7 41 65.9
PSO384G3872 Papaver somniferum HOM05D002135 ORTHO05D002134 5.1e-06 54.7 41 63.4
Peaxi162Scf00285g00039 Petunia axillaris HOM05D002135 ORTHO05D002134 5.1e-06 54.7 41 61.0
Cc02_g10260 Coffea canephora HOM05D002135 ORTHO05D002134 6.7e-06 54.3 41 70.7
Lsat_1_v5_gn_5_164060 Lactuca sativa HOM05D002135 ORTHO05D002134 6.7e-06 54.3 41 63.4
Pp3c12_7280 Physcomitrium patens HOM05D002135 ORTHO05D002134 6.7e-06 54.3 40 62.5
SEGI_24467 Sequoiadendron giganteum HOM05D002135 ORTHO05D002134 6.7e-06 54.3 41 61.0
MSTRG.10832 Avicennia marina HOM05D002135 ORTHO05D002134 8.7e-06 53.9 41 61.0
COL.COLO4_28737 Corchorus olitorius HOM05D002135 ORTHO05D002134 8.7e-06 53.9 41 63.4


User provided reference genes

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