Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035473.2 Cucumis melo HOM05D040713 ORTHO05D005180 6.5e-31 136.7 68 100.0
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 4.0e-12 74.3 44 88.6
MELO3C033847.2 Cucumis melo HOM05D040713 ORTHO05D005180 1.5e-11 72.4 38 89.5
MELO3C030159.2 Cucumis melo HOM05D040713 ORTHO05D005180 3.7e-10 67.8 53 69.8
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 4.8e-10 67.4 44 79.5
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 5.4e-09 63.9 43 69.8
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 5.9e-08 60.5 43 69.8
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 7.7e-08 60.1 43 69.8
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.0e-07 59.7 43 67.4
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.0e-07 59.7 43 67.4
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.3e-07 59.3 42 69.0
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 2.3e-07 58.5 45 68.9
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 2.3e-07 58.5 43 69.8
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 3.8e-07 57.8 43 69.8
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 3.8e-07 57.8 43 69.8
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 3.8e-07 57.8 43 69.8
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 6.6e-07 57.0 44 70.5
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 6.6e-07 57.0 44 70.5
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 6.6e-07 57.0 44 68.2
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 8.6e-07 56.6 43 65.1
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 8.6e-07 56.6 43 67.4
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 8.6e-07 56.6 43 67.4
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 8.6e-07 56.6 43 67.4
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 1.1e-06 56.2 44 65.9
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 1.1e-06 56.2 43 60.5
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 1.5e-06 55.8 43 65.1
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.9e-06 55.5 43 62.8
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.9e-06 55.5 43 62.8
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.5e-06 55.1 44 68.2
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 4.2e-06 54.3 46 69.6
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 4.2e-06 54.3 42 66.7
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.2e-06 54.3 42 66.7
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.2e-06 54.3 42 66.7
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.2e-06 54.3 42 66.7
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.2e-06 54.3 42 66.7
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 4.2e-06 54.3 43 60.5
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 5.5e-06 53.9 45 71.1
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 5.5e-06 53.9 45 71.1
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 5.5e-06 53.9 45 71.1
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 5.5e-06 53.9 45 71.1
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 5.5e-06 53.9 45 71.1
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 5.5e-06 53.9 45 64.4
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 5.5e-06 53.9 42 66.7
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 5.5e-06 53.9 44 63.6
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 7.2e-06 53.5 43 58.1
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 7.2e-06 53.5 44 63.6
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 9.5e-06 53.1 44 63.6
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 9.5e-06 53.1 44 65.9


User provided reference genes

Program Settings