Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 1.8e-167 592.4 289 100.0
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.2e-12 78.2 53 71.7
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 2.0e-12 77.4 46 80.4
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 7.6e-12 75.5 57 63.2
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 2.2e-11 73.9 46 76.1
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.9e-11 73.6 46 76.1
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 6.4e-11 72.4 47 72.3
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 8.4e-11 72.0 57 57.9
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 1.1e-10 71.6 49 69.4
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 1.4e-10 71.2 47 72.3
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 1.4e-10 71.2 46 76.1
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 1.4e-10 71.2 46 76.1
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.9e-10 70.9 47 70.2
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 3.2e-10 70.1 47 68.1
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 3.2e-10 70.1 47 68.1
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 3.2e-10 70.1 46 71.7
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 3.2e-10 70.1 47 68.1
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 5.4e-10 69.3 50 68.0
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 5.4e-10 69.3 46 73.9
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 5.4e-10 69.3 46 71.7
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 5.4e-10 69.3 46 71.7
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 7.1e-10 68.9 47 66.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 7.1e-10 68.9 46 67.4
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 9.3e-10 68.6 46 67.4
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.2e-09 68.2 46 71.7
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.2e-09 68.2 46 73.9
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 1.6e-09 67.8 45 73.3
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 1.6e-09 67.8 46 71.7
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 1.6e-09 67.8 46 71.7
MELO3C032497.2 Cucumis melo HOM05D037216 ORTHO05D167882 2.1e-09 67.4 52 65.4
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 2.7e-09 67.0 46 67.4
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 2.7e-09 67.0 46 67.4
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 2.7e-09 67.0 46 71.7
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 2.7e-09 67.0 46 67.4
MELO3C032692.2 Cucumis melo HOM05D058601 ORTHO05D166442 3.5e-09 66.6 112 40.2
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 3.5e-09 66.6 47 68.1
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 3.5e-09 66.6 71 49.3
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 3.5e-09 66.6 44 75.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 4.6e-09 66.2 43 69.8
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 4.6e-09 66.2 68 54.4
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 6.0e-09 65.9 46 65.2
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 6.0e-09 65.9 46 67.4
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 6.0e-09 65.9 63 55.6
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 1.0e-08 65.1 46 63.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 1.0e-08 65.1 57 56.1
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.3e-08 64.7 45 71.1
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 1.3e-08 64.7 42 69.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.7e-08 64.3 53 60.4
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 2.3e-08 63.9 46 69.6
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 3.0e-08 63.5 46 67.4
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 3.0e-08 63.5 79 49.4
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 3.9e-08 63.2 46 69.6
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 3.9e-08 63.2 46 60.9
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 5.1e-08 62.8 46 73.9
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 8.7e-08 62.0 46 65.2
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 8.7e-08 62.0 46 65.2
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 1.1e-07 61.6 46 65.2
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 1.1e-07 61.6 45 66.7
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.5e-07 61.2 46 65.2
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 1.5e-07 61.2 46 65.2
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.9e-07 60.8 45 64.4
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 2.5e-07 60.5 46 63.0
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 3.3e-07 60.1 45 64.4
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 4.3e-07 59.7 46 60.9
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 5.6e-07 59.3 45 62.2
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 5.6e-07 59.3 46 63.0
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 5.6e-07 59.3 44 65.9
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 1.6e-06 57.8 46 63.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.6e-06 57.8 45 62.2
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 2.1e-06 57.4 45 62.2
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 2.1e-06 57.4 69 47.8
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 2.1e-06 57.4 45 60.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 2.8e-06 57.0 43 62.8
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 2.8e-06 57.0 45 60.0
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 4.8e-06 56.2 45 62.2
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 4.8e-06 56.2 45 60.0
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 4.8e-06 56.2 43 62.8
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 6.2e-06 55.8 43 65.1
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 6.2e-06 55.8 46 60.9
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 8.1e-06 55.5 45 60.0
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 8.1e-06 55.5 45 60.0
MELO3C035139.2 Cucumis melo HOM05D007786 ORTHO05D169200 8.1e-06 55.5 37 75.7


User provided reference genes

Program Settings