Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035342.2 Cucumis melo HOM05D001148 ORTHO05D000960 5.3e-24 113.6 61 100.0
MELO3C001612.2 Cucumis melo HOM05D001148 ORTHO05D000960 4.5e-23 110.5 61 96.7
MELO3C001501.2 Cucumis melo HOM05D001148 ORTHO05D000960 3.2e-21 104.4 61 93.4
ClCG07G002030 Citrullus lanatus HOM05D001148 ORTHO05D000960 7.2e-21 103.2 57 96.5
MELO3C022712.2 Cucumis melo HOM05D001148 ORTHO05D000960 7.2e-21 103.2 57 96.5
CsaV3_3G029990 Cucumis sativus L. HOM05D001148 ORTHO05D000960 7.2e-21 103.2 57 96.5
Sed0007150 Sechium edule HOM05D001148 ORTHO05D000960 7.2e-21 103.2 57 96.5
Hund18424 Selenicereus undatus HOM05D001148 ORTHO05D000960 1.8e-19 98.6 57 91.2
Atru.chr6.1418 Acer truncatum HOM05D001148 ORTHO05D000960 3.0e-19 97.8 57 91.2
Gohir.D07G206200 Gossypium hirsutum HOM05D001148 ORTHO05D000960 3.0e-19 97.8 57 91.2
Gorai.001G232500 Gossypium raimondii HOM05D001148 ORTHO05D000960 3.0e-19 97.8 57 91.2
Gohir.A07G199800 Gossypium hirsutum HOM05D001148 ORTHO05D000960 3.9e-19 97.4 57 89.5
Sp3g06130 Schrenkiella parvula HOM05D001148 ORTHO05D000960 3.9e-19 97.4 57 89.5
EL10Ac7g17879 Beta vulgaris HOM05D001148 ORTHO05D000960 6.7e-19 96.7 57 89.5
Glyma.18G166700 Glycine max HOM05D001148 ORTHO05D000960 6.7e-19 96.7 57 89.5
Lj1g0009415 Lotus japonicus HOM05D001148 ORTHO05D000960 6.7e-19 96.7 57 89.5
Phvul.008G130500 Phaseolus vulgaris HOM05D001148 ORTHO05D000960 6.7e-19 96.7 57 89.5
PGR083G0562 Punica granatum HOM05D001148 ORTHO05D000960 6.7e-19 96.7 57 89.5
VMungo1383G3571 Vigna mungo HOM05D001148 ORTHO05D000960 6.7e-19 96.7 57 89.5
Carub.0008s0838 Capsella rubella HOM05D001148 ORTHO05D000960 8.7e-19 96.3 57 87.7
Ca_24093_v3 Cicer arietinum L. HOM05D001148 ORTHO05D000960 8.7e-19 96.3 57 89.5
Lalb_Chr01g0022241 Lupinus albus HOM05D001148 ORTHO05D000960 8.7e-19 96.3 57 89.5
AL3G18450 Arabidopsis lyrata HOM05D001148 ORTHO05D000960 1.1e-18 95.9 57 86.0
Thhalv10021483m.g Eutrema salsugineum HOM05D001148 ORTHO05D000960 1.1e-18 95.9 57 86.0
Sc05g0001990 Simmondsia chinensis HOM05D001148 ORTHO05D000960 1.1e-18 95.9 57 87.7
Aa31sc661G20 Aethionema arabicum HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
BcaC06g30769 Brassica carinata HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
BcaC06g30770 Brassica carinata HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
A06p38990 Brassica napus HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
C07p39340 Brassica napus HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
BolC7t44454H Brassica oleracea HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
BraA06t26813Z Brassica rapa HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
Cfa004374 Carpinus fangiana HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
Ciclev10022165m.g Citrus clementina HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 89.5
Haze_15038 Corylus avellana HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
THA.LOC104822496 Tarenaya hassleriana HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
Thecc.01G221800 Theobroma cacao HOM05D001148 ORTHO05D000960 1.5e-18 95.5 57 87.7
COL.COLO4_15640 Corchorus olitorius HOM05D001148 ORTHO05D000960 1.9e-18 95.1 57 86.0
Duzib133G1429 Durio zibethinus HOM05D001148 ORTHO05D000960 1.9e-18 95.1 57 87.7
Eucgr.H00780 Eucalyptus grandis HOM05D001148 ORTHO05D000960 1.9e-18 95.1 57 87.7
Phvul.010G021100 Phaseolus vulgaris HOM05D001148 ORTHO05D000960 1.9e-18 95.1 57 87.7
Potri.014G191500 Populus trichocarpa HOM05D001148 ORTHO05D000960 1.9e-18 95.1 57 87.7
QL09p051822 Quercus lobata HOM05D001148 ORTHO05D000960 1.9e-18 95.1 58 86.2
VMungo0331G0409 Vigna mungo HOM05D001148 ORTHO05D000960 1.9e-18 95.1 57 87.7
arahy.Tifrunner.gnm1.ann1.AQ7EBY Arachis hypogaea HOM05D001148 ORTHO05D000960 2.5e-18 94.7 57 86.0
arahy.Tifrunner.gnm1.ann1.HB650C Arachis hypogaea HOM05D001148 ORTHO05D000960 2.5e-18 94.7 57 86.0
Glyma.08G349600 Glycine max HOM05D001148 ORTHO05D000960 2.5e-18 94.7 57 86.0
QL09p052518 Quercus lobata HOM05D001148 ORTHO05D000960 2.5e-18 94.7 56 89.3
AL8G21720 Arabidopsis lyrata HOM05D001148 ORTHO05D000960 3.3e-18 94.4 57 86.0
AT5G48660 Arabidopsis thaliana HOM05D001148 ORTHO05D000960 3.3e-18 94.4 57 86.0
CARHR183250 Cardamine hirsuta HOM05D001148 ORTHO05D000960 3.3e-18 94.4 57 86.0
Cpa.g.sc8.128 Carica papaya HOM05D001148 ORTHO05D000960 3.3e-18 94.4 56 87.5
CiPaw.02G022700 Carya illinoinensis HOM05D001148 ORTHO05D000960 3.3e-18 94.4 57 86.0
Lalb_Chr03g0041551 Lupinus albus HOM05D001148 ORTHO05D000960 3.3e-18 94.4 57 87.7
Sp2g19080 Schrenkiella parvula HOM05D001148 ORTHO05D000960 4.3e-18 94.0 57 86.0
Hund05571 Selenicereus undatus HOM05D001148 ORTHO05D000960 4.3e-18 94.0 57 86.0
Duzib138G1850 Durio zibethinus HOM05D001148 ORTHO05D000960 5.7e-18 93.6 56 87.5
Gohir.A08G195200 Gossypium hirsutum HOM05D001148 ORTHO05D000960 5.7e-18 93.6 57 86.0
Gohir.D08G212656 Gossypium hirsutum HOM05D001148 ORTHO05D000960 5.7e-18 93.6 57 86.0
Gorai.004G226500 Gossypium raimondii HOM05D001148 ORTHO05D000960 5.7e-18 93.6 57 86.0
Lalb_Chr19g0125791 Lupinus albus HOM05D001148 ORTHO05D000960 7.4e-18 93.2 57 84.2
BcaC03g17670 Brassica carinata HOM05D001148 ORTHO05D000960 9.7e-18 92.8 57 84.2
A02p37680 Brassica napus HOM05D001148 ORTHO05D000960 9.7e-18 92.8 57 84.2
C02p56770 Brassica napus HOM05D001148 ORTHO05D000960 9.7e-18 92.8 57 84.2
BolC2t11745H Brassica oleracea HOM05D001148 ORTHO05D000960 9.7e-18 92.8 57 84.2
BraA02t08750Z Brassica rapa HOM05D001148 ORTHO05D000960 9.7e-18 92.8 57 84.2
CARHR081830 Cardamine hirsuta HOM05D001148 ORTHO05D000960 1.3e-17 92.4 57 84.2
Thhalv10004894m.g Eutrema salsugineum HOM05D001148 ORTHO05D000960 1.3e-17 92.4 57 84.2
TPR.G6415 Trifolium pratense HOM05D001148 ORTHO05D000960 1.3e-17 92.4 57 86.0
Ah.15g093950 Amaranthus hybridus HOM05D001148 ORTHO05D000960 1.6e-17 92.0 57 84.2
BcaB07g30040 Brassica carinata HOM05D001148 ORTHO05D000960 1.6e-17 92.0 57 82.5
Prupe.8G199900 Prunus persica HOM05D001148 ORTHO05D000960 1.6e-17 92.0 57 84.2
Ah.08g214550 Amaranthus hybridus HOM05D001148 ORTHO05D000960 2.2e-17 91.7 57 84.2
AT3G07190 Arabidopsis thaliana HOM05D001148 ORTHO05D000960 2.2e-17 91.7 57 82.5
CSS0006751 Camellia sinensis var. sinensis HOM05D001148 ORTHO05D000960 2.2e-17 91.7 57 80.7
Potri.002G245300 Populus trichocarpa HOM05D001148 ORTHO05D000960 2.2e-17 91.7 57 86.0
MD10G1160700 Malus domestica HOM05D001148 ORTHO05D000960 2.8e-17 91.3 57 82.5
QL04p004216 Quercus lobata HOM05D001148 ORTHO05D000960 4.8e-17 90.5 59 81.4
Dinv19182 Davidia involucrata HOM05D001148 ORTHO05D000960 6.3e-17 90.1 57 78.9
MD05G1172500 Malus domestica HOM05D001148 ORTHO05D000960 8.2e-17 89.7 57 78.9
CiPaw.01G049300 Carya illinoinensis HOM05D001148 ORTHO05D000960 1.1e-16 89.4 57 80.7
Medtr7g056133 Medicago truncatula HOM05D001148 ORTHO05D000960 1.1e-16 89.4 57 82.5
Actinidia31463 Actinidia chinensis HOM05D001148 ORTHO05D000960 1.8e-16 88.6 57 78.9
Rhsim13G0047100 Rhododendron simsii HOM05D001148 ORTHO05D000960 1.8e-16 88.6 57 78.9
Duzib211G0673 Durio zibethinus HOM05D001148 ORTHO05D000960 5.3e-16 87.0 57 80.7
vmacro02778 Vaccinium macrocarpon HOM05D001148 ORTHO05D000960 5.3e-16 87.0 57 77.2
Aqoxy2G03903 Aquilegia oxysepala HOM05D001148 ORTHO05D000960 6.9e-16 86.7 56 78.6
Manes.12G046700 Manihot esculenta HOM05D001148 ORTHO05D000960 6.9e-16 86.7 57 78.9
AUR62001120 Chenopodium quinoa HOM05D001148 ORTHO05D000960 9.0e-16 86.3 57 77.2
VMungo1383G0083 Vigna mungo HOM05D001148 ORTHO05D000960 2.0e-15 85.1 57 80.7
Os03g0848400 Oryza sativa ssp. japonica HOM05D001148 ORTHO05D000960 4.5e-15 84.0 56 75.0
TAR362G1309 Trochodendron aralioides HOM05D001148 ORTHO05D000960 4.5e-15 84.0 57 75.4
Zm00001eb064470 Zea mays HOM05D001148 ORTHO05D000960 4.5e-15 84.0 56 75.0
TAR365G1065 Trochodendron aralioides HOM05D001148 ORTHO05D000960 5.9e-15 83.6 56 76.8
CDE05G0112 Ceratophyllum demersum HOM05D000076 ORTHO05D005938 7.7e-15 83.2 56 67.9
CDE05G1151 Ceratophyllum demersum HOM05D001148 ORTHO05D000960 7.7e-15 83.2 56 67.9
Zm00001eb210810 Zea mays HOM05D001148 ORTHO05D000960 1.0e-14 82.8 56 73.2
Nn1g07937 Nelumbo nucifera HOM05D001148 ORTHO05D000960 1.3e-14 82.4 56 73.2
Hma1.2p1_0226F.1_g095460 Hydrangea macrophylla HOM05D001148 ORTHO05D000960 1.7e-14 82.0 53 81.1
ATR0069G015 Amborella trichopoda HOM05D001148 ORTHO05D000960 2.9e-14 81.3 57 68.4
MBI11_g07439_MAGBIO Magnolia biondii HOM05D001148 ORTHO05D000960 3.8e-14 80.9 56 71.4
Manes.13G048200 Manihot esculenta HOM05D001148 ORTHO05D000960 5.0e-14 80.5 57 70.2
TAR636G0873 Trochodendron aralioides HOM05D001148 ORTHO05D000960 5.0e-14 80.5 56 75.0
Hma1.2p1_0149F.1_g066340 Hydrangea macrophylla HOM05D001148 ORTHO05D000960 8.5e-14 79.7 53 77.4
SHI14560 Sapria himalayana HOM05D001148 ORTHO05D000960 1.4e-13 79.0 56 73.2
Os07g0291200 Oryza sativa ssp. japonica HOM05D001148 ORTHO05D000960 5.5e-13 77.0 56 67.9
MBI07_g43171_MAGBIO Magnolia biondii HOM05D001148 ORTHO05D000960 7.2e-13 76.6 53 67.9
Nn3g20040 Nelumbo nucifera HOM05D001148 ORTHO05D000960 7.2e-13 76.6 56 67.9
HPP92_013553 Vanilla planifolia HOM05D001148 ORTHO05D000960 2.1e-12 75.1 55 63.6
Hma1.2p1_2419F.1_g321810 Hydrangea macrophylla HOM05D001148 ORTHO05D000960 6.1e-12 73.6 55 70.9
ECA236G3255 Erigeron canadensis HOM05D001148 ORTHO05D000960 7.9e-12 73.2 57 71.9
HanXRQChr04g0108261 Helianthus annuus HOM05D001148 ORTHO05D000960 7.9e-12 73.2 57 71.9
HanXRQChr07g0189541 Helianthus annuus HOM05D001148 ORTHO05D000960 7.9e-12 73.2 57 71.9
Lsat_1_v5_gn_8_89541 Lactuca sativa HOM05D001148 ORTHO05D000960 7.9e-12 73.2 57 71.9
Cc01_g16800 Coffea canephora HOM05D001148 ORTHO05D000960 1.4e-11 72.4 57 71.9
FvH4_2g18660 Fragaria vesca HOM05D001148 ORTHO05D000960 2.3e-11 71.6 57 64.9
FAN15G0721 Fragaria x ananassa HOM05D001148 ORTHO05D000960 2.3e-11 71.6 57 64.9
FAN24G2152 Fragaria x ananassa HOM05D001148 ORTHO05D000960 2.3e-11 71.6 57 64.9
FAN27G0607 Fragaria x ananassa HOM05D001148 ORTHO05D000960 2.3e-11 71.6 57 64.9
RcHm_v2.0_Chr6g0284221 Rosa chinensis HOM05D001148 ORTHO05D000960 2.3e-11 71.6 57 64.9
DCAR_012661 Daucus carota HOM05D001148 ORTHO05D000960 5.1e-11 70.5 51 72.5
SEGI_22010 Sequoiadendron giganteum HOM05D001148 ORTHO05D000960 5.1e-11 70.5 56 60.7
Peaxi162Scf00238g00026 Petunia axillaris HOM05D001148 ORTHO05D000960 6.7e-11 70.1 57 66.7
PGSC0003DMG400017494 Solanum tuberosum HOM05D001148 ORTHO05D000960 8.8e-11 69.7 57 64.9
MSTRG.17998 Avicennia marina HOM05D001148 ORTHO05D000960 1.1e-10 69.3 52 69.2
CAN.G1003.10 Capsicum annuum HOM05D001148 ORTHO05D000960 1.1e-10 69.3 57 64.9
Solyc09g059570.3 Solanum lycopersicum HOM05D001148 ORTHO05D000960 1.1e-10 69.3 57 64.9
Sopen09g022750 Solanum pennellii HOM05D001148 ORTHO05D000960 1.1e-10 69.3 57 64.9
SGA_v2.0_scaffold6G03496 Striga asiatica HOM05D001148 ORTHO05D000960 1.1e-10 69.3 52 71.2
MSTRG.20965 Avicennia marina HOM05D001148 ORTHO05D000960 1.5e-10 68.9 52 71.2
CANSAT01G1967 Cannabis sativa HOM05D001148 ORTHO05D000960 1.5e-10 68.9 51 70.6
Nitab4.5_0000045g0410 Nicotiana tabacum HOM05D001148 ORTHO05D000960 1.5e-10 68.9 57 64.9
Nitab4.5_0000345g0020 Nicotiana tabacum HOM05D001148 ORTHO05D000960 1.5e-10 68.9 57 64.9
SGA_v2.0_scaffold18G08330 Striga asiatica HOM05D001148 ORTHO05D000960 1.5e-10 68.9 52 69.2
Oeu031827.1 Olea europaea HOM05D001148 ORTHO05D000960 2.0e-10 68.6 51 68.6
unitig_899.g15415 Utricularia gibba HOM05D001148 ORTHO05D000960 2.0e-10 68.6 52 69.2
unitig_746.g26590 Utricularia gibba HOM05D001148 ORTHO05D000960 3.3e-10 67.8 52 69.2
SalBow6G1794 Salvia bowleyana HOM05D001148 ORTHO05D000960 4.4e-10 67.4 52 69.2
SalBow6G4344 Salvia bowleyana HOM05D001148 ORTHO05D000960 4.4e-10 67.4 52 69.2
SEGI_27990 Sequoiadendron giganteum HOM05D001148 ORTHO05D000960 5.7e-10 67.0 59 55.9
MELO3C028141.2 Cucumis melo HOM05D001148 ORTHO05D000960 7.4e-10 66.6 36 97.2
Dinv12659 Davidia involucrata HOM05D001148 ORTHO05D000960 7.4e-10 66.6 43 79.1
Migut.N00627 Erythranthe guttata HOM05D001148 ORTHO05D000960 7.4e-10 66.6 52 69.2
SalBow3G2166 Salvia bowleyana HOM05D001148 ORTHO05D000960 1.3e-09 65.9 51 66.7
Lj2A1127T49 Lonicera japonica HOM05D001148 ORTHO05D000960 2.8e-09 64.7 52 65.4
PSO017G6073 Papaver somniferum HOM05D001148 ORTHO05D000960 1.5e-07 58.9 57 59.6
PSO063G6769 Papaver somniferum HOM05D001148 ORTHO05D000960 1.5e-07 58.9 57 59.6
Sed0022136 Sechium edule HOM05D001148 ORTHO05D000960 1.5e-07 58.9 59 52.5
Manes.13G068088 Manihot esculenta HOM05D001148 ORTHO05D000960 7.7e-07 56.6 59 49.2
ClCG02G008900 Citrullus lanatus HOM05D001148 ORTHO05D000960 1.3e-06 55.8 59 52.5
MELO3C000061.2 Cucumis melo HOM05D001148 ORTHO05D000960 2.2e-06 55.1 56 51.8
THA.LOC104820464 Tarenaya hassleriana HOM05D001148 ORTHO05D000960 3.8e-06 54.3 56 50.0
ATR0589G123 Amborella trichopoda HOM05D001148 ORTHO05D000960 5.0e-06 53.9 56 44.6
Manes.12G073500 Manihot esculenta HOM05D001148 ORTHO05D000960 6.5e-06 53.5 59 47.5
CAN.G332.8 Capsicum annuum HOM05D001148 ORTHO05D000960 8.5e-06 53.1 56 46.4
Cpa.g.sc87.95 Carica papaya HOM05D001148 ORTHO05D000960 8.5e-06 53.1 56 48.2
Cc06_g20860 Coffea canephora HOM05D001148 ORTHO05D000960 8.5e-06 53.1 56 44.6
CsaV3_2G034830 Cucumis sativus L. HOM05D001148 ORTHO05D000960 8.5e-06 53.1 59 49.2
Phvul.005G115800 Phaseolus vulgaris HOM05D001148 ORTHO05D000960 8.5e-06 53.1 56 50.0
HPP92_008834 Vanilla planifolia HOM05D001148 ORTHO05D000960 8.5e-06 53.1 56 46.4


User provided reference genes

Program Settings