Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035335.2 Cucumis melo HOM05D013012 ORTHO05D007509 7.5e-46 186.8 93 100.0
MELO3C030478.2 Cucumis melo HOM05D000320 ORTHO05D007509 4.1e-44 181.0 93 96.8
MELO3C030501.2 Cucumis melo HOM05D013012 ORTHO05D007509 4.6e-43 177.6 93 94.6
MELO3C034772.2 Cucumis melo HOM05D013012 ORTHO05D007509 2.3e-42 175.3 93 94.6
MELO3C001101.2 Cucumis melo HOM05D013012 ORTHO05D007509 4.3e-41 171.0 93 94.6
MELO3C027933.2 Cucumis melo HOM05D013012 ORTHO05D007509 4.3e-41 171.0 93 94.6
MELO3C000622.2 Cucumis melo HOM05D000185 ORTHO05D000105 4.7e-40 167.5 86 96.5
MELO3C016496.2 Cucumis melo HOM05D000320 ORTHO05D007509 3.1e-31 138.3 94 78.7
CsaV3_3G006450 Cucumis sativus L. HOM05D000320 ORTHO05D007509 6.8e-31 137.1 94 77.7
ClCG10G007130 Citrullus lanatus HOM05D000320 ORTHO05D007509 2.6e-30 135.2 94 76.6
Sed0021997 Sechium edule HOM05D000320 ORTHO05D007509 6.2e-24 114.0 94 63.8
Sed0008139 Sechium edule HOM05D000320 ORTHO05D007509 8.1e-24 113.6 93 64.5
Manes.07G024900 Manihot esculenta HOM05D000320 ORTHO05D007509 6.6e-18 94.0 95 52.6
Cpa.g.sc113.37 Carica papaya HOM05D000320 ORTHO05D007509 1.9e-17 92.4 78 61.5
Atru.chr6.517 Acer truncatum HOM05D000320 ORTHO05D007509 3.3e-17 91.7 95 53.7
Manes.10G117100 Manihot esculenta HOM05D000320 ORTHO05D007509 5.6e-17 90.9 94 51.1
CiPaw.06G174400 Carya illinoinensis HOM05D000320 ORTHO05D007509 7.3e-17 90.5 77 59.7
QL02p100827 Quercus lobata HOM05D000320 ORTHO05D007509 9.6e-17 90.1 77 61.0
Thecc.02G017300 Theobroma cacao HOM05D000320 ORTHO05D007509 1.2e-16 89.7 94 51.1
Haze_10038 Corylus avellana HOM05D000320 ORTHO05D007509 1.6e-16 89.4 97 52.6
Prupe.1G579900 Prunus persica HOM05D000320 ORTHO05D007509 1.6e-16 89.4 78 60.3
GSVIVG01023236001 Vitis vinifera HOM05D000320 ORTHO05D007509 6.2e-16 87.4 78 57.7
BcaC03g14661 Brassica carinata HOM05D000320 ORTHO05D007509 1.4e-15 86.3 76 56.6
A02p12890 Brassica napus HOM05D000320 ORTHO05D007509 1.4e-15 86.3 76 56.6
C02p20950 Brassica napus HOM05D000320 ORTHO05D007509 1.4e-15 86.3 76 56.6
BolC2t08238H Brassica oleracea HOM05D000320 ORTHO05D007509 1.4e-15 86.3 76 56.6
BraA02t06343Z Brassica rapa HOM05D000320 ORTHO05D007509 1.4e-15 86.3 76 56.6
CSS0019686 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D007509 1.4e-15 86.3 78 57.7
CSS0020630 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D007509 1.4e-15 86.3 78 57.7
Ciclev10001782m.g Citrus clementina HOM05D000320 ORTHO05D007509 1.8e-15 85.9 95 48.4
RcHm_v2.0_Chr7g0220591 Rosa chinensis HOM05D000320 ORTHO05D007509 1.8e-15 85.9 81 59.3
AT5G49920 Arabidopsis thaliana HOM05D000320 ORTHO05D007509 2.4e-15 85.5 76 55.3
Potri.004G224500 Populus trichocarpa HOM05D000320 ORTHO05D007509 2.4e-15 85.5 95 55.8
BcaB01g02934 Brassica carinata HOM05D000320 ORTHO05D007509 3.1e-15 85.1 76 57.9
Cfa004481 Carpinus fangiana HOM05D000320 ORTHO05D007509 3.1e-15 85.1 97 48.5
Duzib132G0019 Durio zibethinus HOM05D000320 ORTHO05D007509 3.1e-15 85.1 94 47.9
AL8G23870 Arabidopsis lyrata HOM05D000320 ORTHO05D007509 5.2e-15 84.3 76 55.3
Thhalv10014259m.g Eutrema salsugineum HOM05D000320 ORTHO05D007509 6.8e-15 84.0 75 56.0
TWI59G1308 Tripterygium wilfordii HOM05D000320 ORTHO05D007509 6.8e-15 84.0 96 52.1
Sp6g11480 Schrenkiella parvula HOM05D000320 ORTHO05D007509 8.9e-15 83.6 75 56.0
Sc03g0005910 Simmondsia chinensis HOM05D000320 ORTHO05D007509 8.9e-15 83.6 81 54.3
Duzib052G1232 Durio zibethinus HOM05D000320 ORTHO05D007509 1.2e-14 83.2 78 52.6
Lj5C267T7 Lonicera japonica HOM05D000678 ORTHO05D007509 1.5e-14 82.8 78 53.8
CARHR258800 Cardamine hirsuta HOM05D000320 ORTHO05D007509 2.0e-14 82.4 75 56.0
Peaxi162Scf00011g01424 Petunia axillaris HOM05D000320 ORTHO05D007509 2.0e-14 82.4 89 50.6
Aa31LG3G6810 Aethionema arabicum HOM05D000320 ORTHO05D007509 2.6e-14 82.0 78 55.1
BcaB05g24063 Brassica carinata HOM05D000320 ORTHO05D007509 2.6e-14 82.0 76 53.9
Nitab4.5_0000667g0020 Nicotiana tabacum HOM05D000320 ORTHO05D007509 2.6e-14 82.0 78 57.7
Nitab4.5_0001144g0060 Nicotiana tabacum HOM05D000320 ORTHO05D007509 2.6e-14 82.0 78 59.0
PSO017G1808 Papaver somniferum HOM05D000320 ORTHO05D007509 2.6e-14 82.0 91 52.7
PSO170G6595 Papaver somniferum HOM05D000320 ORTHO05D007509 2.6e-14 82.0 93 50.5
MD15G1436100 Malus domestica HOM05D000320 ORTHO05D007509 3.4e-14 81.6 80 60.0
Potri.003G006200 Populus trichocarpa HOM05D000320 ORTHO05D007509 3.4e-14 81.6 95 54.7
Carub.0008s0979 Capsella rubella HOM05D000320 ORTHO05D007509 5.8e-14 80.9 76 55.3
Nitab4.5_0005169g0010 Nicotiana tabacum HOM05D000320 ORTHO05D007509 5.8e-14 80.9 78 52.6
Gorai.002G218300 Gossypium raimondii HOM05D000320 ORTHO05D007509 9.9e-14 80.1 78 51.3
Hma1.2p1_0884F.1_g232430 Hydrangea macrophylla HOM05D000320 ORTHO05D007509 9.9e-14 80.1 75 56.0
COL.COLO4_17714 Corchorus olitorius HOM05D000320 ORTHO05D007509 1.3e-13 79.7 78 50.0
CAN.G855.11 Capsicum annuum HOM05D000320 ORTHO05D007509 1.7e-13 79.3 78 55.1
Cc02_g23250 Coffea canephora HOM05D000320 ORTHO05D007509 2.2e-13 79.0 92 47.8
PGSC0003DMG400047155 Solanum tuberosum HOM05D000320 ORTHO05D007509 2.2e-13 79.0 78 51.3
A03p27550 Brassica napus HOM05D000320 ORTHO05D007509 2.9e-13 78.6 76 56.6
BraA03t11968Z Brassica rapa HOM05D000320 ORTHO05D007509 2.9e-13 78.6 76 56.6
FvH4_5g28590 Fragaria vesca HOM05D000320 ORTHO05D007509 2.9e-13 78.6 86 53.5
Nitab4.5_0000787g0110 Nicotiana tabacum HOM05D000320 ORTHO05D007509 2.9e-13 78.6 78 52.6
Peaxi162Scf00150g01616 Petunia axillaris HOM05D000320 ORTHO05D007509 2.9e-13 78.6 89 47.2
TAR628G1071 Trochodendron aralioides HOM05D000320 ORTHO05D007509 2.9e-13 78.6 87 51.7
unitig_748.g7323 Utricularia gibba HOM05D006457 ORTHO05D008275 2.9e-13 78.6 78 51.3
FAN18G0320 Fragaria x ananassa HOM05D000320 ORTHO05D007509 3.8e-13 78.2 86 53.5
Gohir.D01G176100 Gossypium hirsutum HOM05D000320 ORTHO05D007509 3.8e-13 78.2 78 50.0
PGR042G3341 Punica granatum HOM05D000320 ORTHO05D007509 3.8e-13 78.2 79 51.9
THA.LOC104809031 Tarenaya hassleriana HOM05D000320 ORTHO05D007509 3.8e-13 78.2 78 48.7
Sopen01g045810 Solanum pennellii HOM05D000320 ORTHO05D007509 4.9e-13 77.8 78 50.0
C03p33260 Brassica napus HOM05D000320 ORTHO05D007509 6.4e-13 77.4 76 55.3
BolC3t15648H Brassica oleracea HOM05D000320 ORTHO05D007509 6.4e-13 77.4 76 55.3
Actinidia01612 Actinidia chinensis HOM05D000320 ORTHO05D007509 8.4e-13 77.0 89 43.8
Rhsim05G0113500 Rhododendron simsii HOM05D000320 ORTHO05D007509 8.4e-13 77.0 81 48.1
Sabra03G0003300 Salix brachista HOM05D000320 ORTHO05D007509 8.4e-13 77.0 94 47.9
BcaC01g04845 Brassica carinata HOM05D000320 ORTHO05D007509 1.1e-12 76.6 76 53.9
Lsat_1_v5_gn_9_119881 Lactuca sativa HOM05D000320 ORTHO05D007509 1.4e-12 76.3 82 46.3
Oeu045916.1 Olea europaea HOM05D000320 ORTHO05D007509 1.4e-12 76.3 78 51.3
Gohir.A01G185100 Gossypium hirsutum HOM05D000320 ORTHO05D007509 1.9e-12 75.9 78 48.7
Actinidia26176 Actinidia chinensis HOM05D000320 ORTHO05D007509 4.2e-12 74.7 78 46.2
CANSAT54G2849 Cannabis sativa HOM05D000320 ORTHO05D007509 4.2e-12 74.7 85 52.9
Lalb_Chr20g0123741 Lupinus albus HOM05D000320 ORTHO05D007509 4.2e-12 74.7 87 48.3
Nn3g17693 Nelumbo nucifera HOM05D000678 ORTHO05D007509 4.2e-12 74.7 103 39.8
EL10Ac6g14040 Beta vulgaris HOM05D000320 ORTHO05D007509 5.4e-12 74.3 78 51.3
CANSAT35G1107 Cannabis sativa HOM05D000320 ORTHO05D007509 5.4e-12 74.3 80 50.0
HanXRQChr03g0066341 Helianthus annuus HOM05D000320 ORTHO05D007509 7.1e-12 73.9 80 46.2
Nn4g23698 Nelumbo nucifera HOM05D000320 ORTHO05D007509 7.1e-12 73.9 101 42.6
Duzib248G0718 Durio zibethinus HOM05D000320 ORTHO05D007509 1.6e-11 72.8 77 49.4
Migut.N00843 Erythranthe guttata HOM05D000320 ORTHO05D007509 1.6e-11 72.8 76 47.4
Lj6g0020209 Lotus japonicus HOM05D000320 ORTHO05D007509 1.6e-11 72.8 83 49.4
PSO170G0944 Papaver somniferum HOM05D000320 ORTHO05D007509 1.6e-11 72.8 82 48.8
PSO782G2854 Papaver somniferum HOM05D000320 ORTHO05D007509 1.6e-11 72.8 82 48.8
DCAR_001746 Daucus carota HOM05D000320 ORTHO05D007509 2.1e-11 72.4 78 47.4
Ca_00035_v3 Cicer arietinum L. HOM05D000320 ORTHO05D007509 3.5e-11 71.6 90 46.7
Dinv19420 Davidia involucrata HOM05D000320 ORTHO05D007509 3.5e-11 71.6 82 50.0
Medtr2g005700 Medicago truncatula HOM05D000320 ORTHO05D007509 7.8e-11 70.5 89 43.8
HanXRQChr09g0249061 Helianthus annuus HOM05D000320 ORTHO05D007509 1.0e-10 70.1 78 42.3
arahy.Tifrunner.gnm1.ann1.P6YRJD Arachis hypogaea HOM05D000678 ORTHO05D007509 1.7e-10 69.3 79 49.4
arahy.Tifrunner.gnm1.ann1.Q26GNQ Arachis hypogaea HOM05D000320 ORTHO05D007509 1.7e-10 69.3 79 49.4
MBI06_g06708_MAGBIO Magnolia biondii HOM05D000320 ORTHO05D007509 1.7e-10 69.3 86 46.5
MBI03_g01209_MAGBIO Magnolia biondii HOM05D000320 ORTHO05D007509 3.9e-10 68.2 83 49.4
Glyma.16G002600 Glycine max HOM05D000320 ORTHO05D007509 5.1e-10 67.8 76 46.1
SGA_v2.0_scaffold100G29534 Striga asiatica HOM05D000320 ORTHO05D007509 5.1e-10 67.8 81 48.1
arahy.Tifrunner.gnm1.ann1.IEXA7W Arachis hypogaea HOM05D000320 ORTHO05D007509 8.7e-10 67.0 79 48.1
MSTRG.16486 Avicennia marina HOM05D000320 ORTHO05D007509 1.1e-09 66.6 79 44.3
SEGI_34214 Sequoiadendron giganteum HOM05D000320 ORTHO05D007509 1.1e-09 66.6 80 46.2
VMungo0540G1495 Vigna mungo HOM05D000320 ORTHO05D007509 1.5e-09 66.2 76 48.7
HanXRQChr11g0329701 Helianthus annuus HOM05D000320 ORTHO05D007509 2.5e-09 65.5 78 43.6
HanXRQChr08g0213231 Helianthus annuus HOM05D000678 ORTHO05D001709 4.3e-09 64.7 78 42.3
Psat1g222680 Pisum sativum HOM05D000320 ORTHO05D007509 5.6e-09 64.3 89 40.4
Glyma.12G166300 Glycine max HOM05D000320 ORTHO05D007509 7.3e-09 63.9 81 46.9
TPR.G2081 Trifolium pratense HOM05D000320 ORTHO05D007509 1.3e-08 63.2 90 40.0
Phvul.006G219400 Phaseolus vulgaris HOM05D000320 ORTHO05D007509 1.6e-08 62.8 76 50.0
ECA236G3751 Erigeron canadensis HOM05D000320 ORTHO05D007509 6.2e-08 60.8 78 43.6
HPP92_002038 Vanilla planifolia HOM05D000320 ORTHO05D007509 1.8e-07 59.3 79 41.8
Duzib041G0367 Durio zibethinus HOM05D000678 ORTHO05D002523 2.4e-07 58.9 76 40.8
MELO3C011109.2 Cucumis melo HOM05D000678 ORTHO05D002523 3.1e-07 58.5 75 41.3
Thecc.08G076400 Theobroma cacao HOM05D000678 ORTHO05D002523 3.1e-07 58.5 76 40.8
Mapoly0013s0150 Marchantia polymorpha HOM05D000320 ORTHO05D000532 5.3e-07 57.8 80 42.5
TPR.G15811 Trifolium pratense HOM05D000320 ORTHO05D000532 6.9e-07 57.4 81 39.5
ATR1136G099 Amborella trichopoda HOM05D000320 ORTHO05D007509 9.0e-07 57.0 95 36.8
CDE05G0864 Ceratophyllum demersum HOM05D000320 ORTHO05D000532 9.0e-07 57.0 88 39.8
Gohir.D05G219800 Gossypium hirsutum HOM05D000678 ORTHO05D002523 9.0e-07 57.0 76 40.8
Lalb_Chr07g0179491 Lupinus albus HOM05D000320 ORTHO05D000532 9.0e-07 57.0 78 38.5
Os05g0427100 Oryza sativa ssp. japonica HOM05D000320 ORTHO05D001506 9.0e-07 57.0 63 49.2
RcHm_v2.0_Chr7g0233221 Rosa chinensis HOM05D000678 ORTHO05D002523 1.5e-06 56.2 97 39.2
SHI16241 Sapria himalayana HOM05D000678 ORTHO05D001709 1.5e-06 56.2 75 40.0
SEGI_21437 Sequoiadendron giganteum HOM05D000320 ORTHO05D007509 1.5e-06 56.2 49 61.2
SEGI_38880 Sequoiadendron giganteum HOM05D000320 ORTHO05D000532 1.5e-06 56.2 79 38.0
ATR0629G085 Amborella trichopoda HOM05D000320 ORTHO05D000532 2.0e-06 55.8 80 42.5
CAN.G518.21 Capsicum annuum HOM05D000320 ORTHO05D000532 2.0e-06 55.8 97 36.1
Gorai.009G226800 Gossypium raimondii HOM05D000678 ORTHO05D002523 2.0e-06 55.8 76 39.5
Lj3g0003278 Lotus japonicus HOM05D000320 ORTHO05D000532 2.0e-06 55.8 75 45.3
Psat4g033080 Pisum sativum HOM05D000320 ORTHO05D000532 2.0e-06 55.8 81 35.8
CARHR155560 Cardamine hirsuta HOM05D000320 ORTHO05D000532 2.6e-06 55.5 97 35.1
Duzib116G0324 Durio zibethinus HOM05D000678 ORTHO05D002523 2.6e-06 55.5 75 41.3
Duzib251G0315 Durio zibethinus HOM05D000678 ORTHO05D001709 2.6e-06 55.5 83 38.6
FAN18G1272 Fragaria x ananassa HOM05D000678 ORTHO05D002523 2.6e-06 55.5 100 38.0
Hma1.2p1_0435F.1_g152590 Hydrangea macrophylla HOM05D000678 ORTHO05D002523 2.6e-06 55.5 76 43.4
Nn5g29769 Nelumbo nucifera HOM05D000678 ORTHO05D002523 2.6e-06 55.5 79 40.5
SalBow8G3645 Salvia bowleyana HOM05D000678 ORTHO05D001709 2.6e-06 55.5 76 40.8
Solyc07g007140.3 Solanum lycopersicum HOM05D000320 ORTHO05D000532 2.6e-06 55.5 97 36.1
Sopen07g003190 Solanum pennellii HOM05D000320 ORTHO05D000532 2.6e-06 55.5 97 36.1
Ca_10405_v3 Cicer arietinum L. HOM05D000320 ORTHO05D000532 3.4e-06 55.1 84 39.3
Ciclev10001267m.g Citrus clementina HOM05D000678 ORTHO05D002523 3.4e-06 55.1 76 40.8
CsaV3_2G030490 Cucumis sativus L. HOM05D000678 ORTHO05D002523 3.4e-06 55.1 75 40.0
FAN04G2980 Fragaria x ananassa HOM05D000678 ORTHO05D002523 3.4e-06 55.1 82 42.7
Nn1g05682 Nelumbo nucifera HOM05D000678 ORTHO05D002523 3.4e-06 55.1 79 41.8
VMungo1215G2781 Vigna mungo HOM05D000320 ORTHO05D000532 3.4e-06 55.1 101 34.7
Aqoxy6G00084 Aquilegia oxysepala HOM05D000320 ORTHO05D007509 4.4e-06 54.7 86 38.4
BcaB02g06605 Brassica carinata HOM05D000320 ORTHO05D000532 4.4e-06 54.7 90 40.0
CDE07G0679 Ceratophyllum demersum HOM05D057265 ORTHO05D007509 4.4e-06 54.7 57 50.9
Dinv16036 Davidia involucrata HOM05D000678 ORTHO05D002523 4.4e-06 54.7 76 39.5
SalBow3G4505 Salvia bowleyana HOM05D000320 ORTHO05D000532 4.4e-06 54.7 99 38.4
MSTRG.21947 Avicennia marina HOM05D000320 ORTHO05D000532 5.8e-06 54.3 78 42.3
Ca_27433_v3 Cicer arietinum L. HOM05D000320 ORTHO05D000532 5.8e-06 54.3 75 42.7
Dinv22013 Davidia involucrata HOM05D000678 ORTHO05D002523 5.8e-06 54.3 77 41.6
Nitab4.5_0011752g0020 Nicotiana tabacum HOM05D000320 ORTHO05D000532 5.8e-06 54.3 99 37.4
TPR.G13406 Trifolium pratense HOM05D000320 ORTHO05D000532 5.8e-06 54.3 83 41.0
BraA09t41469Z Brassica rapa HOM05D000320 ORTHO05D000532 7.6e-06 53.9 94 39.4
ClCG08G011870 Citrullus lanatus HOM05D000678 ORTHO05D002523 7.6e-06 53.9 75 41.3
Potri.001G285800 Populus trichocarpa HOM05D000678 ORTHO05D002523 7.6e-06 53.9 96 36.5
Prupe.1G540000 Prunus persica HOM05D000678 ORTHO05D002523 7.6e-06 53.9 99 38.4
TWI79G1500 Tripterygium wilfordii HOM05D000678 ORTHO05D001709 7.6e-06 53.9 76 40.8
DCAR_008868 Daucus carota HOM05D000320 ORTHO05D000532 9.9e-06 53.5 85 40.0
Gohir.A05G217700 Gossypium hirsutum HOM05D000678 ORTHO05D002523 9.9e-06 53.5 76 38.2
Psat4g169760 Pisum sativum HOM05D000320 ORTHO05D000532 9.9e-06 53.5 94 35.1
Potri.010G119500 Populus trichocarpa HOM05D000678 ORTHO05D001709 9.9e-06 53.5 84 36.9
SEGI_15830 Sequoiadendron giganteum HOM05D000320 ORTHO05D007509 9.9e-06 53.5 67 50.7
SGA_v2.0_scaffold239G44018 Striga asiatica HOM05D000320 ORTHO05D000532 9.9e-06 53.5 93 37.6
TAR383G0441 Trochodendron aralioides HOM05D000320 ORTHO05D000532 9.9e-06 53.5 85 38.8
GSVIVG01012894001 Vitis vinifera HOM05D000320 ORTHO05D000532 9.9e-06 53.5 81 38.3


User provided reference genes

Program Settings