Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 9.0e-84 313.5 157 100.0
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 5.8e-67 257.7 140 89.3
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 5.5e-65 251.1 166 78.9
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.9e-58 228.8 166 71.1
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 5.1e-47 191.4 166 59.6
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.1e-46 190.3 166 58.4
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.1e-46 190.3 140 65.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 9.7e-46 187.2 166 58.4
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 9.7e-46 187.2 140 63.6
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.4e-44 183.3 166 58.4
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.4e-44 183.3 166 60.2
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 4.1e-44 181.8 167 57.5
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 9.1e-44 180.6 141 61.7
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 9.1e-44 180.6 169 55.6
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-43 180.3 170 57.1
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.5e-43 179.9 167 55.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 3.4e-43 178.7 165 55.2
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 3.4e-43 178.7 166 56.6
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.5e-43 178.3 140 62.9
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 7.7e-43 177.6 162 59.3
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.0e-42 177.2 142 57.7
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.3e-42 176.8 166 57.2
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.9e-42 175.6 142 57.0
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 5.0e-42 174.9 168 56.5
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 6.5e-42 174.5 167 55.1
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 8.5e-42 174.1 156 56.4
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.1e-41 173.7 167 56.3
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.1e-41 173.7 167 56.9
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.1e-41 173.7 166 54.2
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.1e-41 173.7 167 56.3
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.9e-41 172.9 139 61.9
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.5e-41 172.6 176 51.1
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.5e-41 172.6 166 55.4
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 5.5e-41 171.4 166 54.8
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 7.2e-41 171.0 178 52.2
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 9.4e-41 170.6 166 53.6
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 9.4e-41 170.6 166 54.2
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 9.4e-41 170.6 167 53.9
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.2e-40 170.2 157 54.8
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.6e-40 169.9 166 53.6
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 2.1e-40 169.5 167 53.9
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 2.1e-40 169.5 166 54.8
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 3.6e-40 168.7 167 53.9
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 3.6e-40 168.7 167 51.5
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 4.7e-40 168.3 170 53.5
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 4.7e-40 168.3 168 54.8
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 4.7e-40 168.3 168 55.4
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 6.1e-40 167.9 165 53.9
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 6.1e-40 167.9 164 53.7
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 7.9e-40 167.5 167 53.9
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.0e-39 167.2 163 55.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.0e-39 167.2 163 55.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.3e-39 166.0 167 53.3
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 3.0e-39 165.6 163 52.8
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 3.9e-39 165.2 166 52.4
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 5.2e-39 164.9 171 51.5
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 5.2e-39 164.9 170 50.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 5.2e-39 164.9 167 52.1
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 6.7e-39 164.5 165 53.3
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 6.7e-39 164.5 170 51.8
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 6.7e-39 164.5 167 52.1
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 6.7e-39 164.5 167 52.1
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 8.8e-39 164.1 154 53.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 8.8e-39 164.1 166 51.2
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 8.8e-39 164.1 171 50.9
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-38 163.7 165 53.3
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.1e-38 163.7 163 52.8
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.0e-38 162.9 176 49.4
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.6e-38 162.5 170 52.4
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.6e-38 162.5 168 54.2
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.3e-38 162.2 176 48.9
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 4.4e-38 161.8 169 50.3
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 4.4e-38 161.8 163 53.4
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 4.4e-38 161.8 170 51.2
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 7.4e-38 161.0 159 54.1
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 7.4e-38 161.0 171 50.3
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.3e-37 160.2 176 48.3
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.3e-37 160.2 166 51.8
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.2e-37 159.5 167 50.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 4.8e-37 158.3 166 51.2
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 8.2e-37 157.5 161 52.8
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.4e-36 156.8 159 52.8
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.4e-36 156.8 168 47.6
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.4e-36 156.0 166 48.8
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 5.3e-36 154.8 166 49.4
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.2e-35 153.7 160 51.2
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 2.6e-35 152.5 167 47.3
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 2.6e-35 152.5 164 49.4
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.5e-35 152.1 167 49.7
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 5.9e-35 151.4 164 49.4
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 7.7e-35 151.0 169 49.7
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.3e-34 150.2 162 50.0
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.3e-34 150.2 169 43.8
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.7e-34 149.8 166 47.6
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.2e-34 149.4 169 47.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 3.8e-34 148.7 167 47.3
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 8.5e-34 147.5 167 47.9
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 8.5e-34 147.5 167 50.3
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.1e-33 147.1 184 44.6
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 4.2e-33 145.2 184 44.0
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 7.2e-33 144.4 157 47.8
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.2e-32 143.7 165 47.3
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.2e-32 143.7 165 45.5
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.6e-32 143.3 165 47.3
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.6e-32 143.3 165 47.3
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.6e-32 143.3 161 49.7
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.6e-32 143.3 159 50.3
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 3.6e-32 142.1 165 46.7
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 3.6e-32 142.1 167 47.9
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.0e-31 140.6 236 36.4
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.3e-31 139.4 162 45.7
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.5e-30 136.7 140 50.7
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.0e-30 136.3 179 44.1
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 4.4e-30 135.2 187 43.3
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 8.2e-29 131.0 160 46.9
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 8.2e-29 131.0 160 46.9
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 9.1e-28 127.5 264 32.2
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.2e-27 127.1 116 50.9
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.0e-27 126.3 102 60.8
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 2.7e-27 125.9 170 44.1
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.9e-27 124.8 152 44.7
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 7.7e-27 124.4 102 59.8
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 8.5e-26 120.9 167 41.9
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.9e-25 119.8 102 58.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 4.2e-25 118.6 160 40.6
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.4e-25 117.5 127 49.6
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.6e-24 116.7 160 40.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 6.1e-24 114.8 150 42.0
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 8.8e-23 110.9 149 46.3
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 4.4e-22 108.6 109 57.8
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 4.8e-21 105.1 153 39.2
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 4.1e-20 102.1 111 48.6
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.4e-20 101.7 161 41.6
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.5e-17 93.6 119 38.7
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.2e-14 84.0 128 35.2
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 2.0e-14 83.2 61 65.6
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 5.7e-14 81.6 97 46.4
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 7.5e-14 81.3 97 45.4
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 3.1e-12 75.9 117 38.5
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.3e-10 69.7 92 40.2
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.6e-10 67.8 144 37.5
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 4.3e-09 65.5 102 39.2
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.6e-08 63.5 47 63.8
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.6e-08 63.5 47 63.8
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 2.8e-08 62.8 43 69.8
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 8.0e-08 61.2 96 33.3
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.8e-07 60.1 43 67.4
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 4.0e-07 58.9 46 60.9
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.2e-06 57.4 45 60.0
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 2.0e-06 56.6 91 40.7
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.0e-06 56.6 47 55.3
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 9.8e-06 54.3 33 66.7


User provided reference genes

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