Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034838.2 Cucumis melo HOM05D002508 ORTHO05D005724 1.8e-53 212.6 131 100.0
arahy.Tifrunner.gnm1.ann1.7AZW9Z Arachis hypogaea HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
arahy.Tifrunner.gnm1.ann1.9J7RGN Arachis hypogaea HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
Ca_20460_v3 Cicer arietinum L. HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
Ca_30001_v3 Cicer arietinum L. HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
ClCG09G004400 Citrullus lanatus HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
MELO3C023582.2 Cucumis melo HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
CsaV3_7G030740 Cucumis sativus L. HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
Phvul.011G011500 Phaseolus vulgaris HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
QL04p009835 Quercus lobata HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
Sed0007802 Sechium edule HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
VMungo1127G1573 Vigna mungo HOM05D002508 ORTHO05D005724 2.5e-15 85.9 42 95.2
Actinidia19422 Actinidia chinensis HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
CANSAT80G0809 Cannabis sativa HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
CiPaw.14G002800 Carya illinoinensis HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
ClCG10G012180 Citrullus lanatus HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
Dinv09310 Davidia involucrata HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
Eucgr.G03333 Eucalyptus grandis HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
Lj3g0003136 Lotus japonicus HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
Lalb_Chr03g0024101 Lupinus albus HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
Psat7g200640 Pisum sativum HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
Sabra09G0041800 Salix brachista HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
Sed0025684 Sechium edule HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
GSVIVG01032196001 Vitis vinifera HOM05D002508 ORTHO05D005724 5.7e-15 84.7 42 92.9
Solyc01g087730.4 Solanum lycopersicum HOM05D002508 ORTHO05D005724 9.6e-15 84.0 42 90.5
Sopen01g034680 Solanum pennellii HOM05D002508 ORTHO05D005724 9.6e-15 84.0 42 90.5
PGSC0003DMG400006846 Solanum tuberosum HOM05D002508 ORTHO05D005724 9.6e-15 84.0 42 90.5
TPR.G30166 Trifolium pratense HOM05D002508 ORTHO05D005724 9.6e-15 84.0 42 90.5
MSTRG.20562 Avicennia marina HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
Cc02_g28550 Coffea canephora HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
MELO3C023997.2 Cucumis melo HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
CsaV3_3G031960 Cucumis sativus L. HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
Glyma.09G227200 Glycine max HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 92.9
Glyma.12G009600 Glycine max HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 92.9
Manes.10G136300 Manihot esculenta HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
Nitab4.5_0000707g0020 Nicotiana tabacum HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
Peaxi162Scf00694g00429 Petunia axillaris HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
Potri.001G262400 Populus trichocarpa HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
Potri.009G057100 Populus trichocarpa HOM05D002508 ORTHO05D005724 1.3e-14 83.6 42 90.5
MBI19_g19508_MAGBIO Magnolia biondii HOM05D002508 ORTHO05D005724 1.6e-14 83.2 43 90.7
Nn7g36294 Nelumbo nucifera HOM05D002508 ORTHO05D005724 1.6e-14 83.2 42 92.9
CDE02G4361 Ceratophyllum demersum HOM05D002508 ORTHO05D005724 2.1e-14 82.8 42 90.5
CDE04G1509 Ceratophyllum demersum HOM05D002508 ORTHO05D005724 2.1e-14 82.8 42 90.5
TWI53G1933 Tripterygium wilfordii HOM05D002508 ORTHO05D005724 2.1e-14 82.8 42 88.1
ATR0320G017 Amborella trichopoda HOM05D002508 ORTHO05D005724 2.8e-14 82.4 42 88.1
Dinv43411 Davidia involucrata HOM05D002508 ORTHO05D005724 2.8e-14 82.4 42 90.5
Manes.07G010300 Manihot esculenta HOM05D002508 ORTHO05D005724 2.8e-14 82.4 42 88.1
Nn2g15221 Nelumbo nucifera HOM05D002508 ORTHO05D005724 3.7e-14 82.0 42 90.5
COL.COLO4_12342 Corchorus olitorius HOM05D002508 ORTHO05D005724 4.8e-14 81.6 42 90.5
Duzib138G1745 Durio zibethinus HOM05D002508 ORTHO05D005724 4.8e-14 81.6 42 90.5
Lsat_1_v5_gn_2_60700 Lactuca sativa HOM05D002508 ORTHO05D005724 4.8e-14 81.6 42 88.1
Sed0022327 Sechium edule HOM05D002508 ORTHO05D005724 4.8e-14 81.6 42 88.1
TWI09G0847 Tripterygium wilfordii HOM05D002508 ORTHO05D005724 4.8e-14 81.6 42 88.1
Ciclev10031877m.g Citrus clementina HOM05D002508 ORTHO05D005724 6.3e-14 81.3 42 90.5
Medtr0059s0060 Medicago truncatula HOM05D002508 ORTHO05D005724 6.3e-14 81.3 42 90.5
Nitab4.5_0002388g0060 Nicotiana tabacum HOM05D002508 ORTHO05D005724 6.3e-14 81.3 42 88.1
Oeu027379.3 Olea europaea HOM05D002508 ORTHO05D005724 6.3e-14 81.3 42 88.1
Sabra16G0160900 Salix brachista HOM05D002508 ORTHO05D005724 6.3e-14 81.3 42 90.5
Sc11g0009060 Simmondsia chinensis HOM05D002508 ORTHO05D005724 6.3e-14 81.3 42 88.1
Hma1.2p1_0685F.1_g203160 Hydrangea macrophylla HOM05D002508 ORTHO05D005724 8.2e-14 80.9 42 85.7
unitig_61.g26459 Utricularia gibba HOM05D002508 ORTHO05D005724 8.2e-14 80.9 42 83.3
vmacro21196 Vaccinium macrocarpon HOM05D002508 ORTHO05D005724 8.2e-14 80.9 42 90.5
CSS0027034 Camellia sinensis var. sinensis HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
Haze_03134 Corylus avellana HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
Haze_03137 Corylus avellana HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
Duzib133G0102 Durio zibethinus HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
Migut.B01269 Erythranthe guttata HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 85.7
Gohir.A08G142600 Gossypium hirsutum HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
Gohir.D08G163600 Gossypium hirsutum HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
Gorai.004G170500 Gossypium raimondii HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
PSO339G4165 Papaver somniferum HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
PSO384G1180 Papaver somniferum HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 88.1
SalBow5G1388 Salvia bowleyana HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 85.7
SalBow5G5543 Salvia bowleyana HOM05D002508 ORTHO05D005724 1.1e-13 80.5 42 85.7
HanXRQChr14g0439821 Helianthus annuus HOM05D002508 ORTHO05D005724 1.4e-13 80.1 42 83.3
unitig_0.g1394 Utricularia gibba HOM05D002508 ORTHO05D005724 1.4e-13 80.1 42 83.3
TAR633G0895 Trochodendron aralioides HOM05D002508 ORTHO05D005724 1.8e-13 79.7 42 88.1
TAR633G1571 Trochodendron aralioides HOM05D002508 ORTHO05D005724 1.8e-13 79.7 42 88.1
Atru.chr11.2577 Acer truncatum HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 90.5
ECA238G3317 Erigeron canadensis HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
FvH4_7g01650 Fragaria vesca HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
FAN01G2421 Fragaria x ananassa HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
FAN03G2253 Fragaria x ananassa HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
FAN06G1664 Fragaria x ananassa HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
FAN10G0515 Fragaria x ananassa HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
FAN10G3115 Fragaria x ananassa HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
MD02G1302200 Malus domestica HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
MD07G1022000 Malus domestica HOM05D002508 ORTHO05D005724 2.4e-13 79.3 42 85.7
RcHm_v2.0_Chr1g0317921 Rosa chinensis HOM05D002508 ORTHO05D005724 3.1e-13 79.0 42 85.7
Cfa022637 Carpinus fangiana HOM05D002508 ORTHO05D005724 4.1e-13 78.6 42 85.7
Thecc.01G406900 Theobroma cacao HOM05D002508 ORTHO05D005724 4.1e-13 78.6 42 88.1
Zm00001eb287080 Zea mays HOM05D002508 ORTHO05D005724 4.1e-13 78.6 42 85.7
PGR031G2824 Punica granatum HOM05D002508 ORTHO05D005724 5.3e-13 78.2 42 85.7
Aqoxy1G00328 Aquilegia oxysepala HOM05D002508 ORTHO05D005724 6.9e-13 77.8 42 85.7
Cpa.g.c29343.2 Carica papaya HOM05D002508 ORTHO05D005724 6.9e-13 77.8 42 85.7
THA.LOC104823029 Tarenaya hassleriana HOM05D002508 ORTHO05D005724 6.9e-13 77.8 42 85.7
DCAR_029704 Daucus carota HOM05D002508 ORTHO05D005724 9.0e-13 77.4 42 83.3
Prupe.2G022100 Prunus persica HOM05D002508 ORTHO05D005724 9.0e-13 77.4 42 83.3
Rhsim01G0126900 Rhododendron simsii HOM05D002508 ORTHO05D005724 9.0e-13 77.4 42 85.7
Lj7A576T82 Lonicera japonica HOM05D002508 ORTHO05D005724 1.5e-12 76.6 42 83.3
SGA_v2.0_scaffold4G02496 Striga asiatica HOM05D002508 ORTHO05D005724 1.5e-12 76.6 42 83.3
AagrBONN_evm.TU.Sc2ySwM_228.5151 Anthoceros agrestis HOM05D002508 ORTHO05D005724 2.0e-12 76.3 42 83.3
Aa31LG10G17360 Aethionema arabicum HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
AL5G46350 Arabidopsis lyrata HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
BcaB02g08057 Brassica carinata HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
BcaC02g10355 Brassica carinata HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
A04p00070 Brassica napus HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
C04p29830 Brassica napus HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
BolC4t24515H Brassica oleracea HOM05D000433 ORTHO05D000443 3.4e-12 75.5 42 83.3
BraA04t15727Z Brassica rapa HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
Carub.0005s3010 Capsella rubella HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
CARHR291480 Cardamine hirsuta HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
Thhalv10006062m.g Eutrema salsugineum HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
Sp5g00070 Schrenkiella parvula HOM05D002508 ORTHO05D005724 3.4e-12 75.5 42 83.3
Os05g0388500 Oryza sativa ssp. japonica HOM05D002508 ORTHO05D005724 4.5e-12 75.1 42 78.6
SEGI_22662 Sequoiadendron giganteum HOM05D002508 ORTHO05D005724 4.5e-12 75.1 42 81.0
Hund14183 Selenicereus undatus HOM05D002508 ORTHO05D005724 7.6e-12 74.3 42 81.0
AT3G63490 Arabidopsis thaliana HOM05D002508 ORTHO05D005724 1.3e-11 73.6 42 81.0
THA.LOC104817578 Tarenaya hassleriana HOM05D002508 ORTHO05D005724 1.3e-11 73.6 42 81.0
Mapoly0043s0143 Marchantia polymorpha HOM05D002508 ORTHO05D005724 2.2e-11 72.8 42 81.0
SMO353G0403 Selaginella moellendorffii HOM05D002508 ORTHO05D005724 2.2e-11 72.8 42 78.6
EL10Ac2g04366 Beta vulgaris HOM05D002508 ORTHO05D005724 1.4e-10 70.1 42 76.2
Ah.10g038620 Amaranthus hybridus HOM05D002508 ORTHO05D005724 4.2e-10 68.6 42 73.8
AUR62009416 Chenopodium quinoa HOM05D002508 ORTHO05D005724 4.2e-10 68.6 42 73.8
AUR62023093 Chenopodium quinoa HOM05D002508 ORTHO05D005724 5.5e-10 68.2 42 73.8
Cre02.g088900 Chlamydomonas reinhardtii HOM05D002508 ORTHO05D005724 5.5e-10 68.2 37 81.1
CBR_g8929 Chara braunii HOM05D002508 ORTHO05D005724 2.1e-09 66.2 43 67.4
Pp3c23_11170 Physcomitrium patens HOM05D002508 ORTHO05D005724 6.1e-09 64.7 42 69.0
Pp3c23_7820 Physcomitrium patens HOM05D002508 ORTHO05D005724 6.1e-09 64.7 42 69.0
Pp3c24_9740 Physcomitrium patens HOM05D002508 ORTHO05D005724 6.1e-09 64.7 42 69.0
CBR_g41806 Chara braunii HOM05D002508 ORTHO05D005724 7.9e-09 64.3 38 73.7
MELO3C033461.2 Cucumis melo HOM05D002508 ORTHO05D005724 4.3e-07 58.5 31 83.9
MCO07G072 Micromonas commoda HOM05D002508 ORTHO05D005724 9.7e-07 57.4 37 67.6
Haze_26792 Corylus avellana HOM05D002508 ORTHO05D005724 1.3e-06 57.0 40 57.5


User provided reference genes

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