Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 1.1e-62 243.0 120 100.0
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 1.0e-39 166.8 117 76.1
Sed0004456 Sechium edule HOM05D007970 ORTHO05D009943 5.7e-22 107.8 102 58.8
Sed0017981 Sechium edule HOM05D007970 ORTHO05D009943 5.2e-15 84.7 100 55.0
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.2e-14 83.6 118 50.8
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 1.5e-14 83.2 117 50.4
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.5e-14 83.2 117 50.4
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 1.5e-14 83.2 112 50.0
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 2.0e-14 82.8 113 49.6
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.6e-14 82.4 118 50.0
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 4.4e-14 81.6 118 50.0
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 5.7e-14 81.3 114 48.2
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 9.8e-14 80.5 114 48.2
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 1.7e-13 79.7 114 46.5
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.7e-13 79.7 118 50.0
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 2.8e-13 79.0 121 51.2
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 6.3e-13 77.8 120 49.2
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 9.1e-12 73.9 118 47.5
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.6e-11 73.2 118 45.8
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 2.7e-11 72.4 110 43.6
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 4.5e-11 71.6 110 45.5
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 5.9e-11 71.2 116 45.7
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 1.3e-10 70.1 89 50.6
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 1.7e-10 69.7 114 46.5
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 2.9e-10 68.9 70 58.6
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 6.6e-10 67.8 120 45.0
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.9e-09 66.2 120 44.2
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.5e-09 65.9 83 50.6
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 4.2e-09 65.1 79 49.4
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 9.5e-09 63.9 53 67.9
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 9.5e-09 63.9 138 40.6
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.8e-08 62.4 120 41.7
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 6.1e-08 61.2 89 44.9
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 6.1e-08 61.2 96 44.8
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 1.0e-07 60.5 112 40.2
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 1.4e-07 60.1 98 44.9
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 1.8e-07 59.7 81 43.2
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 3.0e-07 58.9 67 53.7
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 3.0e-07 58.9 131 36.6
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 4.0e-07 58.5 130 40.0
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 4.0e-07 58.5 131 36.6
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 4.0e-07 58.5 58 58.6
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 4.0e-07 58.5 103 40.8
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 4.0e-07 58.5 100 40.0
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 6.8e-07 57.8 112 41.1
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 8.9e-07 57.4 97 41.2
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 8.9e-07 57.4 88 45.5
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 8.9e-07 57.4 88 45.5
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.5e-06 56.6 127 36.2
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.5e-06 56.6 95 46.3
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.5e-06 56.6 86 43.0
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.0e-06 56.2 86 48.8
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.0e-06 56.2 86 48.8
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.0e-06 56.2 74 51.4
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 2.6e-06 55.8 60 58.3
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.4e-06 55.5 93 39.8
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 4.4e-06 55.1 79 46.8
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 4.4e-06 55.1 95 45.3
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 4.4e-06 55.1 99 42.4
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 5.7e-06 54.7 75 50.7
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 7.5e-06 54.3 98 40.8
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 7.5e-06 54.3 119 37.0
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 7.5e-06 54.3 81 42.0
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 9.8e-06 53.9 78 41.0
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 9.8e-06 53.9 75 45.3
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 9.8e-06 53.9 101 42.6
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 9.8e-06 53.9 78 42.3


User provided reference genes

Program Settings