Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034615.2 Cucumis melo HOM05D000176 ORTHO05D009654 4.4e-48 194.1 87 100.0
MELO3C027926.2 Cucumis melo HOM05D007519 ORTHO05D009654 5.6e-43 177.2 84 90.5
MELO3C030021.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.8e-41 172.2 86 87.2
MELO3C001396.2 Cucumis melo HOM05D000176 ORTHO05D009654 1.2e-40 169.5 81 91.4
MELO3C034625.2 Cucumis melo HOM05D007519 ORTHO05D009654 1.5e-40 169.1 86 87.2
MELO3C029334.2 Cucumis melo HOM05D007519 ORTHO05D009654 8.6e-36 153.3 75 88.0
MELO3C012803.2 Cucumis melo HOM05D007519 ORTHO05D009654 1.1e-35 152.9 79 83.5
MELO3C032988.2 Cucumis melo HOM05D000176 ORTHO05D009654 2.0e-32 142.1 73 79.5
MELO3C033724.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.1e-27 126.3 86 69.8
MELO3C031987.2 Cucumis melo HOM05D000176 ORTHO05D009654 7.5e-24 113.6 59 84.7
MELO3C034271.2 Cucumis melo HOM05D000176 ORTHO05D009654 2.3e-20 102.1 48 91.7
CsaV3_2G011080 Cucumis sativus L. HOM05D000176 ORTHO05D009654 3.4e-16 88.2 57 64.9
CsaV3_5G015580 Cucumis sativus L. HOM05D000176 ORTHO05D000106 2.4e-14 82.0 88 43.2
A06p04680 Brassica napus HOM05D000176 ORTHO05D003511 7.1e-14 80.5 88 45.5
C06p02530 Brassica napus HOM05D000176 ORTHO05D003511 7.1e-14 80.5 88 45.5
BolC6t35381H Brassica oleracea HOM05D000176 ORTHO05D003511 7.1e-14 80.5 88 45.5
BraA06t23671Z Brassica rapa HOM05D000176 ORTHO05D003511 7.1e-14 80.5 88 45.5
AL1G54690 Arabidopsis lyrata HOM05D000176 ORTHO05D003511 1.2e-13 79.7 88 44.3
CARHR037760 Cardamine hirsuta HOM05D000176 ORTHO05D003511 1.2e-13 79.7 88 44.3
Thhalv10011184m.g Eutrema salsugineum HOM05D000176 ORTHO05D003511 1.2e-13 79.7 88 43.2
Carub.0001s3722 Capsella rubella HOM05D000176 ORTHO05D003511 1.6e-13 79.3 88 43.2
MELO3C030761.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.6e-13 79.3 35 94.3
ClCG06G006800 Citrullus lanatus HOM05D000176 ORTHO05D000013 2.1e-13 79.0 85 45.9
Sp1g35090 Schrenkiella parvula HOM05D000176 ORTHO05D003511 2.1e-13 79.0 88 44.3
AT1G48120 Arabidopsis thaliana HOM05D000176 ORTHO05D003511 4.6e-13 77.8 88 43.2
Oeu017988.1 Olea europaea HOM05D000176 ORTHO05D000106 4.6e-13 77.8 88 42.0
Sed0014738 Sechium edule HOM05D000176 ORTHO05D000106 6.0e-13 77.4 78 46.2
THA.LOC104802612 Tarenaya hassleriana HOM05D000176 ORTHO05D003511 6.0e-13 77.4 88 43.2
Aa31LG10G5620 Aethionema arabicum HOM05D000176 ORTHO05D003511 7.8e-13 77.0 88 43.2
MELO3C022946.2 Cucumis melo HOM05D000176 ORTHO05D000106 7.8e-13 77.0 88 42.0
ClCG11G000230 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.0e-12 76.6 78 47.4
Migut.M01636 Erythranthe guttata HOM05D000176 ORTHO05D000106 1.0e-12 76.6 88 40.9
Lj1g0006892 Lotus japonicus HOM05D000176 ORTHO05D000106 1.0e-12 76.6 87 39.1
SGA_v2.0_scaffold42G15967 Striga asiatica HOM05D000176 ORTHO05D000106 1.7e-12 75.9 88 40.9
MELO3C033541.2 Cucumis melo HOM05D000176 ORTHO05D000106 3.0e-12 75.1 72 47.2
Oeu049412.1 Olea europaea HOM05D000176 ORTHO05D000106 1.1e-11 73.2 77 42.9
Oeu049415.1 Olea europaea HOM05D000176 ORTHO05D000106 1.1e-11 73.2 77 42.9
QL02p103239 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-11 72.8 63 49.2
CsaV3_5G039840 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.9e-11 72.4 62 53.2
QL02p053683 Quercus lobata HOM05D000176 ORTHO05D000106 2.5e-11 72.0 89 43.8
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 4.3e-11 71.2 89 43.8
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 4.3e-11 71.2 87 43.7
QL09p008289 Quercus lobata HOM05D001043 ORTHO05D000106 4.3e-11 71.2 66 47.0
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 4.3e-11 71.2 89 43.8
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 5.6e-11 70.9 89 43.8
CSS0010546 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-10 68.9 64 51.6
QL07p004315 Quercus lobata HOM05D000176 ORTHO05D000106 2.8e-10 68.6 65 49.2
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.8e-10 68.6 89 42.7
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 2.8e-10 68.6 65 49.2
QL03p015444 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-10 68.2 63 46.0
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-10 68.2 63 46.0
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-10 68.2 63 46.0
QL09p003987 Quercus lobata HOM05D000176 ORTHO05D003511 3.6e-10 68.2 79 41.8
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-10 68.2 89 42.7
QL93p2017_0003 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-10 68.2 63 46.0
ClCG01G008600 Citrullus lanatus HOM05D000176 ORTHO05D000106 6.2e-10 67.4 45 64.4
Cc05_g12610 Coffea canephora HOM05D000176 ORTHO05D000106 6.2e-10 67.4 88 37.5
QL01p018788 Quercus lobata HOM05D000176 ORTHO05D000106 6.2e-10 67.4 73 46.6
MSTRG.13026 Avicennia marina HOM05D000176 ORTHO05D000106 8.1e-10 67.0 84 39.3
CSS0011501 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 8.1e-10 67.0 64 51.6
QL08p003473 Quercus lobata HOM05D000176 ORTHO05D005465 8.1e-10 67.0 89 42.7
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 8.1e-10 67.0 89 42.7
Sed0027921 Sechium edule HOM05D012029 ORTHO05D014680 8.1e-10 67.0 84 39.3
Cc03_g15950 Coffea canephora HOM05D000176 ORTHO05D003511 1.1e-09 66.6 77 40.3
CSS0042023 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.4e-09 66.2 64 51.6
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.4e-09 66.2 80 40.0
SHI45281 Sapria himalayana HOM05D000176 ORTHO05D000106 1.4e-09 66.2 66 45.5
CSS0006036 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-09 65.9 64 50.0
CSS0007867 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-09 65.9 64 50.0
CSS0030233 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-09 65.9 64 50.0
CSS0038560 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-09 65.9 64 50.0
CSS0048918 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-09 65.9 64 50.0
QL01p023632 Quercus lobata HOM05D000176 ORTHO05D000106 1.8e-09 65.9 63 46.0
TWI31G0542 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.8e-09 65.9 88 40.9
TWI75G1856 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.8e-09 65.9 88 40.9
CSS0004167 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.4e-09 65.5 64 51.6
CSS0024487 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.4e-09 65.5 64 51.6
CSS0026564 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.4e-09 65.5 64 51.6
Lj1g0015263 Lotus japonicus HOM05D000176 ORTHO05D000106 2.4e-09 65.5 87 36.8
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 2.4e-09 65.5 87 41.4
QL05p061244 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-09 65.5 72 43.1
QL10p058474 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-09 65.5 72 43.1
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-09 65.5 63 44.4
CSS0018283 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.1e-09 65.1 64 51.6
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 3.1e-09 65.1 72 43.1
CSS0024646 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.0e-09 64.7 64 50.0
QL04p053141 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-09 64.7 60 45.0
QL04p066053 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-09 64.7 60 45.0
QL05p078397 Quercus lobata HOM05D000070 ORTHO05D000106 4.0e-09 64.7 60 45.0
QL06p040368 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-09 64.7 60 45.0
QL12p023375 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-09 64.7 60 45.0
QL12p031843 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-09 64.7 60 45.0
QL93p0164_0014 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-09 64.7 60 45.0
Lalb_Chr01g0015401 Lupinus albus HOM05D000176 ORTHO05D000106 5.3e-09 64.3 83 41.0
Rhsim10G0079000 Rhododendron simsii HOM05D000176 ORTHO05D003511 5.3e-09 64.3 72 43.1
TWI09G0559 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 5.3e-09 64.3 88 39.8
CSS0009485 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.9e-09 63.9 64 50.0
CSS0036437 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.9e-09 63.9 64 48.4
CSS0049971 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.9e-09 63.9 64 48.4
Sed0015346 Sechium edule HOM05D000176 ORTHO05D000106 6.9e-09 63.9 82 39.0
MELO3C033835.2 Cucumis melo HOM05D007519 ORTHO05D009654 9.0e-09 63.5 29 89.7
QL04p015528 Quercus lobata HOM05D000176 ORTHO05D000106 9.0e-09 63.5 63 46.0
QL05p044352 Quercus lobata HOM05D000176 ORTHO05D000106 9.0e-09 63.5 63 46.0
QL05p061710 Quercus lobata HOM05D010675 ORTHO05D014145 9.0e-09 63.5 63 46.0
QL05p088783 Quercus lobata HOM05D000176 ORTHO05D000106 9.0e-09 63.5 63 46.0
QL07p012019 Quercus lobata HOM05D000176 ORTHO05D000106 9.0e-09 63.5 63 46.0
QL08p003348 Quercus lobata HOM05D000176 ORTHO05D000106 9.0e-09 63.5 63 46.0
QL08p007762 Quercus lobata HOM05D000176 ORTHO05D000106 9.0e-09 63.5 63 46.0
QL08p013497 Quercus lobata HOM05D000017 ORTHO05D007253 9.0e-09 63.5 63 46.0
Sed0010925 Sechium edule HOM05D000176 ORTHO05D000106 1.2e-08 63.2 66 43.9
CsaV3_1G024380 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.5e-08 62.8 70 42.9
CsaV3_6G016110 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.5e-08 62.8 70 42.9
MELO3C029327.2 Cucumis melo HOM05D007519 ORTHO05D009654 2.6e-08 62.0 29 89.7
QL02p018295 Quercus lobata HOM05D000176 ORTHO05D000106 2.6e-08 62.0 84 39.3
QL08p006787 Quercus lobata HOM05D000176 ORTHO05D000106 2.6e-08 62.0 63 44.4
QL10p058009 Quercus lobata HOM05D000176 ORTHO05D000106 2.6e-08 62.0 63 44.4
QL11p007847 Quercus lobata HOM05D002083 ORTHO05D000332 2.6e-08 62.0 72 41.7
QL11p043362 Quercus lobata HOM05D000176 ORTHO05D000106 2.6e-08 62.0 84 39.3
MELO3C020246.2 Cucumis melo HOM05D007519 ORTHO05D009654 3.4e-08 61.6 29 86.2
Peaxi162Scf00613g00816 Petunia axillaris HOM05D000176 ORTHO05D000106 3.4e-08 61.6 88 36.4
QL02p071405 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-08 61.6 72 41.7
QL03p000009 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-08 61.6 72 41.7
QL05p088131 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-08 61.6 84 39.3
QL06p043010 Quercus lobata HOM05D000529 ORTHO05D000472 3.4e-08 61.6 84 39.3
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-08 61.6 84 39.3
QL09p020558 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-08 61.6 72 41.7
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-08 61.6 72 41.7
QL05p083456 Quercus lobata HOM05D000176 ORTHO05D000106 4.4e-08 61.2 72 40.3
QL08p063032 Quercus lobata HOM05D002302 ORTHO05D002728 4.4e-08 61.2 72 40.3
QL10p063859 Quercus lobata HOM05D000176 ORTHO05D000106 4.4e-08 61.2 63 44.4
MELO3C030497.2 Cucumis melo HOM05D007519 ORTHO05D009654 5.8e-08 60.8 29 86.2
QL02p062649 Quercus lobata HOM05D000176 ORTHO05D000106 5.8e-08 60.8 88 35.2
QL03p060265 Quercus lobata HOM05D000176 ORTHO05D000106 5.8e-08 60.8 88 35.2
QL05p049475 Quercus lobata HOM05D000176 ORTHO05D000106 5.8e-08 60.8 88 35.2
QL10p054240 Quercus lobata HOM05D000176 ORTHO05D000106 5.8e-08 60.8 88 35.2
QL12p036511 Quercus lobata HOM05D000176 ORTHO05D000106 5.8e-08 60.8 88 35.2
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 7.6e-08 60.5 63 42.9
QL11p013596 Quercus lobata HOM05D000176 ORTHO05D000106 7.6e-08 60.5 85 35.3
TWI38G1670 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 7.6e-08 60.5 77 37.7
Peaxi162Scf00001g00148 Petunia axillaris HOM05D000176 ORTHO05D000106 9.9e-08 60.1 88 35.2
QL08p031423 Quercus lobata HOM05D000176 ORTHO05D009654 9.9e-08 60.1 60 46.7
MELO3C027159.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.3e-07 59.7 77 39.0
MELO3C031790.2 Cucumis melo HOM05D007519 ORTHO05D009654 1.3e-07 59.7 29 79.3
Rhsim03G0028500 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.3e-07 59.7 64 45.3
SHI06307 Sapria himalayana HOM05D002876 ORTHO05D000106 1.3e-07 59.7 74 39.2
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-07 59.3 71 39.4
QL03p014985 Quercus lobata HOM05D001365 ORTHO05D001291 2.2e-07 58.9 62 43.5
QL05p048284 Quercus lobata HOM05D000176 ORTHO05D000106 2.2e-07 58.9 65 44.6
TWI31G0719 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 2.2e-07 58.9 88 37.5
CSS0021846 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.8e-07 58.2 64 43.8
CSS0025783 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.8e-07 58.2 64 43.8
CSS0037304 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.8e-07 58.2 64 43.8
CSS0043966 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.8e-07 58.2 64 43.8
CSS0044124 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.8e-07 58.2 64 43.8
Solyc12g006100.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.8e-07 58.2 78 35.9
Sopen12g002060 Solanum pennellii HOM05D000176 ORTHO05D003511 4.9e-07 57.8 78 35.9
TWI79G1140 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 4.9e-07 57.8 88 35.2
QL03p011779 Quercus lobata HOM05D000176 ORTHO05D000106 6.4e-07 57.4 75 37.3
QL11p029083 Quercus lobata HOM05D000176 ORTHO05D000106 6.4e-07 57.4 88 34.1
arahy.Tifrunner.gnm1.ann1.M3TN6X Arachis hypogaea HOM05D000176 ORTHO05D000106 8.4e-07 57.0 81 37.0
MELO3C000086.2 Cucumis melo HOM05D000176 ORTHO05D000106 8.4e-07 57.0 77 37.7
MELO3C027426.2 Cucumis melo HOM05D000176 ORTHO05D000106 8.4e-07 57.0 75 38.7
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 1.1e-06 56.6 72 40.3
arahy.Tifrunner.gnm1.ann1.7K8IWY Arachis hypogaea HOM05D000176 ORTHO05D000106 1.4e-06 56.2 72 37.5
arahy.Tifrunner.gnm1.ann1.UGFV7M Arachis hypogaea HOM05D000176 ORTHO05D000106 1.9e-06 55.8 81 37.0
Lj2g0026406 Lotus japonicus HOM05D000176 ORTHO05D000106 1.9e-06 55.8 51 47.1
CSS0045961 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.4e-06 55.5 64 42.2
MELO3C027711.2 Cucumis melo HOM05D000176 ORTHO05D000106 2.4e-06 55.5 65 43.1
Lj4g0008099 Lotus japonicus HOM05D000176 ORTHO05D000106 2.4e-06 55.5 76 35.5
QL01p024632 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-06 55.5 42 50.0
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 2.4e-06 55.5 72 38.9
SHI21981 Sapria himalayana HOM05D002876 ORTHO05D009654 2.4e-06 55.5 42 52.4
arahy.Tifrunner.gnm1.ann1.X9EH9C Arachis hypogaea HOM05D000176 ORTHO05D000106 3.2e-06 55.1 81 35.8
QL01p028314 Quercus lobata HOM05D000176 ORTHO05D000106 3.2e-06 55.1 65 41.5
arahy.Tifrunner.gnm1.ann1.UD457V Arachis hypogaea HOM05D000176 ORTHO05D000106 4.2e-06 54.7 76 36.8
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 4.2e-06 54.7 55 45.5
QL09p045979 Quercus lobata HOM05D000176 ORTHO05D000106 4.2e-06 54.7 72 37.5
arahy.Tifrunner.gnm1.ann1.594H2I Arachis hypogaea HOM05D000176 ORTHO05D000106 5.4e-06 54.3 74 35.1
arahy.Tifrunner.gnm1.ann1.H85X5R Arachis hypogaea HOM05D000176 ORTHO05D000106 7.1e-06 53.9 73 41.1
Os01g0531200 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 7.1e-06 53.9 90 34.4
Os01g0738500 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 7.1e-06 53.9 90 34.4
Os02g0592600 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 7.1e-06 53.9 90 34.4
QL11p038845 Quercus lobata HOM05D000176 ORTHO05D000106 7.1e-06 53.9 42 54.8
arahy.Tifrunner.gnm1.ann1.80HB5U Arachis hypogaea HOM05D000176 ORTHO05D000106 9.3e-06 53.5 89 33.7
AUR62032729 Chenopodium quinoa HOM05D000861 ORTHO05D007385 9.3e-06 53.5 45 46.7


User provided reference genes

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