Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034612.2 Cucumis melo HOM05D001046 ORTHO05D005883 6.7e-199 697.2 365 100.0
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 1.1e-18 98.6 101 59.4
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 1.8e-18 97.8 101 58.4
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 4.0e-18 96.7 101 58.4
MELO3C033345.2 Cucumis melo HOM05D001046 ORTHO05D166444 2.0e-17 94.4 104 60.6
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 1.3e-16 91.7 101 54.5
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 2.7e-14 84.0 101 51.5
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 2.3e-13 80.9 104 47.1
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 8.6e-13 79.0 144 37.5
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 1.1e-12 78.6 101 46.5
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.5e-12 77.4 96 45.8
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.5e-12 77.4 101 44.6
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 3.3e-12 77.0 104 45.2
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 4.3e-12 76.6 106 42.5
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 4.3e-12 76.6 104 42.3
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 5.6e-12 76.3 101 43.6
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 5.6e-12 76.3 101 43.6
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 5.6e-12 76.3 106 42.5
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 5.6e-12 76.3 106 42.5
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 7.3e-12 75.9 101 44.6
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 7.3e-12 75.9 106 42.5
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 9.6e-12 75.5 104 46.2
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 1.2e-11 75.1 106 40.6
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 2.1e-11 74.3 106 41.5
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 2.1e-11 74.3 106 41.5
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 2.1e-11 74.3 101 42.6
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 2.8e-11 73.9 143 37.1
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 2.8e-11 73.9 109 41.3
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 4.7e-11 73.2 134 35.8
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 4.7e-11 73.2 101 42.6
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 6.2e-11 72.8 144 34.0
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 6.2e-11 72.8 140 37.9
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 8.1e-11 72.4 104 42.3
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 8.1e-11 72.4 104 42.3
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 8.1e-11 72.4 144 32.6
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 1.1e-10 72.0 104 38.5
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 1.1e-10 72.0 101 43.6
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 1.1e-10 72.0 101 42.6
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 1.1e-10 72.0 101 42.6
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 1.4e-10 71.6 101 43.6
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 1.8e-10 71.2 156 32.7
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 2.4e-10 70.9 106 40.6
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 3.1e-10 70.5 101 39.6
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 3.1e-10 70.5 101 41.6
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 6.8e-10 69.3 104 46.2
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 8.9e-10 68.9 142 33.8
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.2e-09 68.6 142 33.8
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 1.2e-09 68.6 142 33.8
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 1.5e-09 68.2 101 42.6
MELO3C035106.2 Cucumis melo HOM05D013600 ORTHO05D016905 1.5e-09 68.2 65 58.5
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 1.5e-09 68.2 101 41.6
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 1.5e-09 68.2 105 39.0
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 2.0e-09 67.8 100 41.0
MELO3C029913.2 Cucumis melo HOM05D013600 ORTHO05D016905 4.4e-09 66.6 76 57.9
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 7.6e-09 65.9 108 39.8
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 9.9e-09 65.5 101 43.6
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 9.9e-09 65.5 104 38.5
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 1.7e-08 64.7 108 41.7
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.7e-08 64.7 100 43.0
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 2.2e-08 64.3 101 37.6
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 2.9e-08 63.9 101 38.6
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 2.9e-08 63.9 104 34.6
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 3.8e-08 63.5 101 37.6
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 3.8e-08 63.5 101 42.6
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 4.9e-08 63.2 101 38.6
MELO3C032626.2 Cucumis melo HOM05D013600 ORTHO05D005467 4.9e-08 63.2 88 45.5
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 6.4e-08 62.8 101 36.6
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 8.4e-08 62.4 104 41.3
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 8.4e-08 62.4 101 39.6
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 1.1e-07 62.0 104 40.4
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 1.1e-07 62.0 104 41.3
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 1.4e-07 61.6 101 39.6
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 1.9e-07 61.2 101 37.6
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 1.9e-07 61.2 101 36.6
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 1.9e-07 61.2 109 34.9
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 1.9e-07 61.2 109 34.9
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 4.2e-07 60.1 104 39.4
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 5.4e-07 59.7 97 41.2
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 5.4e-07 59.7 144 30.6
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 7.1e-07 59.3 104 38.5
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 7.1e-07 59.3 104 38.5
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 7.1e-07 59.3 100 39.0
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 9.3e-07 58.9 101 36.6
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 9.3e-07 58.9 104 39.4
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 2.7e-06 57.4 101 35.6
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 2.7e-06 57.4 104 37.5
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 3.5e-06 57.0 95 35.8
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 3.5e-06 57.0 104 38.5
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 3.5e-06 57.0 122 33.6
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 6.0e-06 56.2 104 34.6
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 6.0e-06 56.2 101 36.6
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 7.8e-06 55.8 110 40.9
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 7.8e-06 55.8 95 35.8


User provided reference genes

Program Settings