Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034539.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.6e-140 502.7 241 100.0
MELO3C035028.2 Cucumis melo HOM05D005049 ORTHO05D006032 3.6e-60 235.7 260 55.0
MELO3C029173.2 Cucumis melo HOM05D005049 ORTHO05D006032 6.9e-59 231.5 223 60.1
MELO3C032284.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.1e-43 181.0 245 46.9
MELO3C032147.2 Cucumis melo HOM05D005049 ORTHO05D006032 3.9e-38 162.5 153 61.4
MELO3C028527.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.3e-33 147.5 74 90.5
MELO3C009957.2 Cucumis melo HOM05D005049 ORTHO05D006032 2.9e-25 119.8 169 43.8
MELO3C033934.2 Cucumis melo HOM05D005049 ORTHO05D006032 5.0e-25 119.0 124 50.8
CsaV3_3G042430 Cucumis sativus L. HOM05D005049 ORTHO05D006032 1.9e-24 117.1 169 44.4
Sed0008163 Sechium edule HOM05D005049 ORTHO05D006032 9.7e-21 104.8 182 41.2
MELO3C029630.2 Cucumis melo HOM05D000320 ORTHO05D006032 3.1e-19 99.8 189 39.7
MELO3C033889.2 Cucumis melo HOM05D005049 ORTHO05D006032 5.3e-19 99.0 243 33.7
ClCG10G014210 Citrullus lanatus HOM05D005049 ORTHO05D006032 7.0e-19 98.6 176 40.3
MELO3C034518.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-17 92.8 58 79.3
MELO3C031470.2 Cucumis melo HOM05D005049 ORTHO05D006032 6.5e-17 92.0 184 37.5
MELO3C028441.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-16 91.3 46 91.3
MELO3C035580.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-16 90.9 60 76.7
Dinv35060 Davidia involucrata HOM05D005049 ORTHO05D006032 3.2e-16 89.7 111 45.9
Actinidia36083 Actinidia chinensis HOM05D005049 ORTHO05D006032 4.2e-16 89.4 124 43.5
Ah.11g045070 Amaranthus hybridus HOM05D005049 ORTHO05D006032 1.6e-15 87.4 117 44.4
MBI16_g40725_MAGBIO Magnolia biondii HOM05D005049 ORTHO05D006032 4.7e-15 85.9 117 41.9
Oeu004708.3 Olea europaea HOM05D005049 ORTHO05D006032 6.1e-15 85.5 125 36.8
Prupe.3G284100 Prunus persica HOM05D005049 ORTHO05D006032 6.1e-15 85.5 122 42.6
Actinidia35742 Actinidia chinensis HOM05D005049 ORTHO05D006032 8.0e-15 85.1 125 44.0
MSTRG.3171 Avicennia marina HOM05D005049 ORTHO05D006032 1.0e-14 84.7 166 34.3
SGA_v2.0_scaffold205G41694 Striga asiatica HOM05D005049 ORTHO05D006032 2.3e-14 83.6 101 41.6
PSO017G6025 Papaver somniferum HOM05D005049 ORTHO05D006032 3.0e-14 83.2 106 42.5
Cfa007428 Carpinus fangiana HOM05D005049 ORTHO05D006032 4.0e-14 82.8 111 38.7
Hma1.2p1_0858F.1_g229450 Hydrangea macrophylla HOM05D005049 ORTHO05D006032 4.0e-14 82.8 105 45.7
Sc07g0003030 Simmondsia chinensis HOM05D005049 ORTHO05D006032 4.0e-14 82.8 126 39.7
Manes.17G121600 Manihot esculenta HOM05D005049 ORTHO05D006032 5.2e-14 82.4 111 43.2
Ciclev10015290m.g Citrus clementina HOM05D005049 ORTHO05D006032 8.8e-14 81.6 180 35.0
DCAR_015040 Daucus carota HOM05D005049 ORTHO05D006032 8.8e-14 81.6 117 40.2
ATR0730G137 Amborella trichopoda HOM05D005049 ORTHO05D006032 1.2e-13 81.3 104 45.2
QL02p076639 Quercus lobata HOM05D005049 ORTHO05D006032 1.2e-13 81.3 118 39.0
GSVIVG01032478001 Vitis vinifera HOM05D005049 ORTHO05D006032 1.2e-13 81.3 102 43.1
AUR62040116 Chenopodium quinoa HOM05D005049 ORTHO05D006032 1.5e-13 80.9 102 43.1
Nitab4.5_0003337g0090 Nicotiana tabacum HOM05D005049 ORTHO05D006032 1.5e-13 80.9 129 40.3
Nitab4.5_0005176g0050 Nicotiana tabacum HOM05D005049 ORTHO05D006032 2.0e-13 80.5 129 40.3
Migut.H00120 Erythranthe guttata HOM05D005049 ORTHO05D006032 2.6e-13 80.1 98 41.8
vmacro05822 Vaccinium macrocarpon HOM05D005049 ORTHO05D006032 2.6e-13 80.1 147 39.5
MELO3C035514.2 Cucumis melo HOM05D005049 ORTHO05D006032 4.4e-13 79.3 54 70.4
Manes.17G121440 Manihot esculenta HOM05D005049 ORTHO05D006032 4.4e-13 79.3 105 43.8
Potri.017G073200 Populus trichocarpa HOM05D005049 ORTHO05D006032 4.4e-13 79.3 98 44.9
Medtr6g007165 Medicago truncatula HOM05D005049 ORTHO05D006032 5.7e-13 79.0 104 44.2
CANSAT64G0408 Cannabis sativa HOM05D005049 ORTHO05D006032 7.5e-13 78.6 120 37.5
ECA236G0066 Erigeron canadensis HOM05D000454 ORTHO05D006032 7.5e-13 78.6 221 29.4
FAN14G5348 Fragaria x ananassa HOM05D005049 ORTHO05D006032 7.5e-13 78.6 105 41.9
SGA_v2.0_scaffold66G22479 Striga asiatica HOM05D005049 ORTHO05D006032 7.5e-13 78.6 101 39.6
TPR.G25677 Trifolium pratense HOM05D005049 ORTHO05D006032 7.5e-13 78.6 130 39.2
Psat1g056840 Pisum sativum HOM05D005049 ORTHO05D006032 9.7e-13 78.2 104 41.3
Haze_14669 Corylus avellana HOM05D005049 ORTHO05D006032 1.3e-12 77.8 114 37.7
arahy.Tifrunner.gnm1.ann1.EYLE23 Arachis hypogaea HOM05D005049 ORTHO05D006032 1.7e-12 77.4 109 40.4
EL10Ac2g02398 Beta vulgaris HOM05D005049 ORTHO05D006032 1.7e-12 77.4 98 41.8
ECA238G2197 Erigeron canadensis HOM05D005049 ORTHO05D006032 1.7e-12 77.4 159 32.7
Glyma.06G185500 Glycine max HOM05D005049 ORTHO05D006032 1.7e-12 77.4 102 41.2
Lj2g0009991 Lotus japonicus HOM05D005049 ORTHO05D006032 1.7e-12 77.4 110 40.0
MD17G1034700 Malus domestica HOM05D005049 ORTHO05D006032 2.2e-12 77.0 98 41.8
TWI12G0306 Tripterygium wilfordii HOM05D005049 ORTHO05D006032 2.2e-12 77.0 125 40.8
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 2.8e-12 76.6 159 34.0
FvH4_6g50640 Fragaria vesca HOM05D005049 ORTHO05D006032 2.8e-12 76.6 105 41.9
MD09G1034200 Malus domestica HOM05D005049 ORTHO05D006032 2.8e-12 76.6 102 41.2
PSO478G2829 Papaver somniferum HOM05D005049 ORTHO05D006032 2.8e-12 76.6 106 39.6
RcHm_v2.0_Chr2g0171441 Rosa chinensis HOM05D005049 ORTHO05D006032 2.8e-12 76.6 103 41.7
arahy.Tifrunner.gnm1.ann1.41NV30 Arachis hypogaea HOM05D005049 ORTHO05D006032 3.7e-12 76.3 109 40.4
arahy.Tifrunner.gnm1.ann1.B7LRKU Arachis hypogaea HOM05D005049 ORTHO05D006032 3.7e-12 76.3 109 40.4
Ca_04197_v3 Cicer arietinum L. HOM05D005049 ORTHO05D006032 3.7e-12 76.3 104 44.2
Manes.17G121264 Manihot esculenta HOM05D005049 ORTHO05D006032 3.7e-12 76.3 105 42.9
Phvul.004G014500 Phaseolus vulgaris HOM05D005049 ORTHO05D006032 3.7e-12 76.3 183 32.8
THA.LOC104805397 Tarenaya hassleriana HOM05D005049 ORTHO05D006032 3.7e-12 76.3 132 36.4
VMungo0464G1607 Vigna mungo HOM05D005049 ORTHO05D006032 3.7e-12 76.3 104 42.3
Glyma.13G168600 Glycine max HOM05D005049 ORTHO05D006032 4.8e-12 75.9 108 40.7
Lalb_Chr02g0160341 Lupinus albus HOM05D005049 ORTHO05D006032 4.8e-12 75.9 110 39.1
TPR.G2274 Trifolium pratense HOM05D005049 ORTHO05D006032 6.3e-12 75.5 149 32.9
Prupe.6G347800 Prunus persica HOM05D005049 ORTHO05D006032 8.2e-12 75.1 159 35.8
Cpa.g.sc39.89 Carica papaya HOM05D005049 ORTHO05D006032 1.1e-11 74.7 98 41.8
CiPaw.03G037900 Carya illinoinensis HOM05D005049 ORTHO05D006032 1.1e-11 74.7 118 34.7
Atru.chr6.2298 Acer truncatum HOM05D005049 ORTHO05D006032 1.4e-11 74.3 111 36.9
AagrBONN_evm.TU.Sc2ySwM_117.2022 Anthoceros agrestis HOM05D005049 ORTHO05D006032 1.4e-11 74.3 113 38.1
TAR622G0573 Trochodendron aralioides HOM05D005049 ORTHO05D006032 1.4e-11 74.3 112 41.1
HanXRQChr07g0198731 Helianthus annuus HOM05D005049 ORTHO05D006032 1.8e-11 73.9 90 43.3
Nn4g22794 Nelumbo nucifera HOM05D005049 ORTHO05D006032 1.8e-11 73.9 98 42.9
HPP92_021346 Vanilla planifolia HOM05D005049 ORTHO05D006032 4.1e-11 72.8 101 41.6
HPP92_021351 Vanilla planifolia HOM05D005049 ORTHO05D006032 4.1e-11 72.8 101 41.6
Duzib264G0847 Durio zibethinus HOM05D005049 ORTHO05D006032 5.3e-11 72.4 134 35.8
Zm00001eb153900 Zea mays HOM05D005049 ORTHO05D006032 7.0e-11 72.0 115 36.5
Eucgr.I01812 Eucalyptus grandis HOM05D005049 ORTHO05D006032 9.1e-11 71.6 90 44.4
PGR142G2968 Punica granatum HOM05D005049 ORTHO05D006032 9.1e-11 71.6 116 41.4
Lj9C583G13 Lonicera japonica HOM05D005049 ORTHO05D006032 1.2e-10 71.2 100 42.0
Thecc.04G008900 Theobroma cacao HOM05D005049 ORTHO05D006032 1.2e-10 71.2 122 38.5
SMO172G0207 Selaginella moellendorffii HOM05D005049 ORTHO05D006032 2.0e-10 70.5 84 44.0
Aqoxy3G01017 Aquilegia oxysepala HOM05D005049 ORTHO05D006032 3.5e-10 69.7 102 41.2
Mapoly0123s0027 Marchantia polymorpha HOM05D005049 ORTHO05D006032 7.7e-10 68.6 89 40.4
Hund02271 Selenicereus undatus HOM05D005049 ORTHO05D006032 7.7e-10 68.6 95 38.9
Aa31LG9G1340 Aethionema arabicum HOM05D005049 ORTHO05D006032 1.0e-09 68.2 96 39.6
C04p46950 Brassica napus HOM05D005049 ORTHO05D006032 2.2e-09 67.0 132 34.8
BolC4t26289H Brassica oleracea HOM05D005049 ORTHO05D006032 2.2e-09 67.0 132 34.8
Cre14.g612500 Chlamydomonas reinhardtii HOM05D005049 ORTHO05D006032 2.2e-09 67.0 91 42.9
Duzib147G1079 Durio zibethinus HOM05D005049 ORTHO05D006032 2.2e-09 67.0 109 37.6
BraA04t16979Z Brassica rapa HOM05D005049 ORTHO05D006032 2.9e-09 66.6 132 34.8
Carub.0007s3535 Capsella rubella HOM05D005049 ORTHO05D006032 2.9e-09 66.6 94 39.4
Thhalv10027764m.g Eutrema salsugineum HOM05D005049 ORTHO05D006032 3.8e-09 66.2 120 36.7
AT5G40280 Arabidopsis thaliana HOM05D005049 ORTHO05D006032 5.0e-09 65.9 95 38.9
A04p13200 Brassica napus HOM05D005049 ORTHO05D006032 8.5e-09 65.1 106 36.8
CBR_g12691 Chara braunii HOM05D005049 ORTHO05D006032 8.5e-09 65.1 128 32.0
MCO05G513 Micromonas commoda HOM05D005049 ORTHO05D006032 8.5e-09 65.1 91 41.8
MELO3C005065.2 Cucumis melo HOM05D007519 ORTHO05D009654 1.9e-08 63.9 35 82.9
PRCOL_00002137 Prasinoderma coloniale HOM05D005049 ORTHO05D006032 2.5e-08 63.5 130 34.6
Sp7g01660 Schrenkiella parvula HOM05D005049 ORTHO05D006032 1.6e-07 60.8 108 37.0
A04p15750 Brassica napus HOM05D005049 ORTHO05D006032 2.1e-07 60.5 90 36.7
BraA04t17209Z Brassica rapa HOM05D005049 ORTHO05D006032 2.1e-07 60.5 90 36.7
CSS0003936 Camellia sinensis var. sinensis HOM05D005049 ORTHO05D006032 1.8e-06 57.4 121 34.7
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 1.8e-06 57.4 128 32.8
Haze_27246 Corylus avellana HOM05D005049 ORTHO05D006032 2.3e-06 57.0 95 35.8
BcaB06g27470 Brassica carinata HOM05D005049 ORTHO05D006032 3.0e-06 56.6 95 36.8
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 3.0e-06 56.6 131 32.1
RcHm_v2.0_Chr2g0150791 Rosa chinensis HOM05D005049 ORTHO05D006032 6.8e-06 55.5 37 62.2


User provided reference genes

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