Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034382.2 Cucumis melo HOM05D006907 ORTHO05D008598 3.4e-69 265.0 144 100.0
ClCG07G005250 Citrullus lanatus HOM05D006907 ORTHO05D008598 1.2e-37 160.2 124 71.0
Sed0002395 Sechium edule HOM05D006907 ORTHO05D008598 6.4e-28 127.9 123 57.7
CsaV3_5G011090 Cucumis sativus L. HOM05D006907 ORTHO05D008598 8.1e-23 110.9 59 88.1
MD01G1168900 Malus domestica HOM05D006907 ORTHO05D008598 5.3e-14 81.6 123 44.7
RcHm_v2.0_Chr1g0372451 Rosa chinensis HOM05D006907 ORTHO05D008598 1.2e-13 80.5 136 45.6
MD07G1234800 Malus domestica HOM05D006907 ORTHO05D008598 5.8e-13 78.2 139 43.9
Prupe.2G265100 Prunus persica HOM05D006907 ORTHO05D008598 2.2e-12 76.3 130 43.8
Cfa001200 Carpinus fangiana HOM05D006907 ORTHO05D008598 2.9e-12 75.9 130 43.1
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 3.8e-12 75.5 140 41.4
Ciclev10031468m.g Citrus clementina HOM05D006907 ORTHO05D008598 4.9e-12 75.1 129 39.5
FAN10G1315 Fragaria x ananassa HOM05D006907 ORTHO05D008598 4.2e-11 72.0 132 44.7
FvH4_7g26040 Fragaria vesca HOM05D006907 ORTHO05D008598 5.4e-11 71.6 132 43.9
Atru.chr12.200 Acer truncatum HOM05D006907 ORTHO05D008598 7.1e-11 71.2 135 43.0
FAN03G0212 Fragaria x ananassa HOM05D006907 ORTHO05D008598 7.1e-11 71.2 129 45.7
Gorai.011G206700 Gossypium raimondii HOM05D006907 ORTHO05D008598 1.2e-10 70.5 126 42.9
Ca_05520_v3 Cicer arietinum L. HOM05D006907 ORTHO05D008598 2.1e-10 69.7 81 54.3
Gohir.A10G177900 Gossypium hirsutum HOM05D006907 ORTHO05D008598 2.1e-10 69.7 127 41.7
Thecc.10G184400 Theobroma cacao HOM05D006907 ORTHO05D008598 2.1e-10 69.7 134 41.0
THA.LOC104803214 Tarenaya hassleriana HOM05D006907 ORTHO05D008598 2.7e-10 69.3 144 40.3
CANSAT56G4251 Cannabis sativa HOM05D006907 ORTHO05D008598 3.5e-10 68.9 131 40.5
Gohir.D10G184500 Gossypium hirsutum HOM05D006907 ORTHO05D008598 4.6e-10 68.6 126 42.1
LjContig00408g0020575 Lotus japonicus HOM05D006907 ORTHO05D008598 4.6e-10 68.6 120 46.7
CiPaw.01G307100 Carya illinoinensis HOM05D006907 ORTHO05D008598 6.0e-10 68.2 133 39.8
PGR142G0552 Punica granatum HOM05D006907 ORTHO05D008598 6.0e-10 68.2 138 43.5
Duzib128G0149 Durio zibethinus HOM05D006907 ORTHO05D008598 7.9e-10 67.8 134 41.8
Manes.07G142300 Manihot esculenta HOM05D006907 ORTHO05D008598 1.0e-09 67.4 134 38.8
Potri.019G059400 Populus trichocarpa HOM05D006907 ORTHO05D008598 1.0e-09 67.4 129 38.8
Thhalv10016615m.g Eutrema salsugineum HOM05D006907 ORTHO05D008598 3.0e-09 65.9 87 47.1
Carub.0004s2305 Capsella rubella HOM05D006907 ORTHO05D008598 1.5e-08 63.5 79 54.4
Cpa.g.sc19.43 Carica papaya HOM05D006907 ORTHO05D008598 2.5e-08 62.8 129 40.3
Lalb_Chr10g0102821 Lupinus albus HOM05D006907 ORTHO05D008598 2.5e-08 62.8 91 46.2
GSVIVG01032660001 Vitis vinifera HOM05D006907 ORTHO05D008598 2.5e-08 62.8 61 59.0
vmacro09954 Vaccinium macrocarpon HOM05D006907 ORTHO05D008598 4.3e-08 62.0 105 43.8
Lsat_1_v5_gn_9_60220 Lactuca sativa HOM05D006907 ORTHO05D008598 5.6e-08 61.6 74 48.6
Medtr5g067730 Medicago truncatula HOM05D006907 ORTHO05D008598 5.6e-08 61.6 79 50.6
Psat2g062800 Pisum sativum HOM05D006907 ORTHO05D008598 5.6e-08 61.6 85 47.1
Eucgr.G03146 Eucalyptus grandis HOM05D006907 ORTHO05D008598 7.4e-08 61.2 63 54.0
AL4G38640 Arabidopsis lyrata HOM05D006907 ORTHO05D008598 9.6e-08 60.8 132 40.2
Nn2g10277 Nelumbo nucifera HOM05D006907 ORTHO05D008598 9.6e-08 60.8 88 43.2
Phvul.008G186100 Phaseolus vulgaris HOM05D006907 ORTHO05D008598 9.6e-08 60.8 117 50.4
Sp4g23070 Schrenkiella parvula HOM05D006907 ORTHO05D008598 9.6e-08 60.8 38 76.3
vmacro23416 Vaccinium macrocarpon HOM05D006907 ORTHO05D008598 9.6e-08 60.8 105 42.9
COL.COLO4_19467 Corchorus olitorius HOM05D006907 ORTHO05D008598 1.3e-07 60.5 134 41.8
VMungo0647G0955 Vigna mungo HOM05D006907 ORTHO05D008598 1.3e-07 60.5 119 43.7
Sc10g0003040 Simmondsia chinensis HOM05D006907 ORTHO05D008598 1.6e-07 60.1 97 42.3
TWI09G1357 Tripterygium wilfordii HOM05D006907 ORTHO05D008598 2.1e-07 59.7 126 39.7
Actinidia01006 Actinidia chinensis HOM05D006907 ORTHO05D008598 2.8e-07 59.3 65 56.9
Actinidia07785 Actinidia chinensis HOM05D006907 ORTHO05D008598 2.8e-07 59.3 92 46.7
A04p31130 Brassica napus HOM05D006907 ORTHO05D008598 2.8e-07 59.3 125 40.8
Hund13440 Selenicereus undatus HOM05D006907 ORTHO05D008598 2.8e-07 59.3 73 47.9
SEGI_00934 Sequoiadendron giganteum HOM05D006907 ORTHO05D008598 2.8e-07 59.3 39 71.8
BraA04t18568Z Brassica rapa HOM05D006907 ORTHO05D008598 3.7e-07 58.9 125 40.8
CSS0049786 Camellia sinensis var. sinensis HOM05D006907 ORTHO05D008598 3.7e-07 58.9 68 47.1
QL08p065047 Quercus lobata HOM05D006907 ORTHO05D008598 3.7e-07 58.9 71 49.3
AUR62030595 Chenopodium quinoa HOM05D006907 ORTHO05D008598 4.8e-07 58.5 87 44.8
TPR.G33940 Trifolium pratense HOM05D006907 ORTHO05D008598 4.8e-07 58.5 80 51.2
Solyc03g095760.3 Solanum lycopersicum HOM05D006907 ORTHO05D008598 6.2e-07 58.2 88 37.5
Sopen03g025680 Solanum pennellii HOM05D006907 ORTHO05D008598 6.2e-07 58.2 88 37.5
CDE04G0642 Ceratophyllum demersum HOM05D006907 ORTHO05D008598 8.1e-07 57.8 42 71.4
AUR62024944 Chenopodium quinoa HOM05D006907 ORTHO05D008598 8.1e-07 57.8 103 39.8
Sabra19G0074600 Salix brachista HOM05D006907 ORTHO05D008598 8.1e-07 57.8 126 34.9
ECA232G1360 Erigeron canadensis HOM05D006907 ORTHO05D008598 1.1e-06 57.4 39 66.7
MBI15_g39385_MAGBIO Magnolia biondii HOM05D006907 ORTHO05D008598 1.4e-06 57.0 81 45.7
HanXRQChr15g0493701 Helianthus annuus HOM05D006907 ORTHO05D008598 1.8e-06 56.6 62 50.0
AT2G40760 Arabidopsis thaliana HOM05D006907 ORTHO05D008598 2.4e-06 56.2 132 37.9
C04p68530 Brassica napus HOM05D006907 ORTHO05D008598 2.4e-06 56.2 129 38.0
BolC4t28352H Brassica oleracea HOM05D006907 ORTHO05D008598 2.4e-06 56.2 80 45.0
HanXRQChr09g0252611 Helianthus annuus HOM05D006907 ORTHO05D008598 2.4e-06 56.2 89 40.4
BcaB01g03517 Brassica carinata HOM05D006907 ORTHO05D008598 4.0e-06 55.5 39 66.7
Glyma.02G218900 Glycine max HOM05D006907 ORTHO05D008598 4.0e-06 55.5 63 50.8
Lj1A968T56 Lonicera japonica HOM05D006907 ORTHO05D008598 4.0e-06 55.5 73 45.2
Rhsim09G0186200 Rhododendron simsii HOM05D006907 ORTHO05D008598 4.0e-06 55.5 82 47.6
TAR369G1120 Trochodendron aralioides HOM05D006907 ORTHO05D008598 4.0e-06 55.5 30 83.3
Ah.11g042410 Amaranthus hybridus HOM05D006907 ORTHO05D008598 5.3e-06 55.1 80 42.5
Duzib114G0530 Durio zibethinus HOM05D006907 ORTHO05D008598 5.3e-06 55.1 135 42.2
CSS0048250 Camellia sinensis var. sinensis HOM05D006907 ORTHO05D008598 6.9e-06 54.7 67 49.3
Nitab4.5_0005454g0010 Nicotiana tabacum HOM05D006907 ORTHO05D008598 6.9e-06 54.7 93 40.9
Os05g0323100 Oryza sativa ssp. japonica HOM05D006907 ORTHO05D008598 9.0e-06 54.3 35 71.4


User provided reference genes

Program Settings