Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034092.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.6e-175 617.1 313 100.0
MELO3C029528.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-43 180.6 128 72.7
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-42 177.9 96 90.6
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.6e-42 176.8 96 90.6
MELO3C030143.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-41 172.9 96 87.5
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.3e-38 163.7 104 79.8
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-38 163.3 89 89.9
MELO3C029479.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.6e-29 132.5 69 88.4
MELO3C033385.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-28 130.6 117 63.2
MELO3C033921.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.0e-26 124.0 108 63.0
MELO3C027571.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.8e-25 119.8 85 69.4
CsaV3_UNG238520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 3.2e-24 116.7 169 43.2
MELO3C028514.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.3e-24 115.2 67 85.1
MELO3C032029.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-22 111.7 59 88.1
Sed0002737 Sechium edule HOM05D000539 ORTHO05D000592 8.7e-22 108.6 65 73.8
Sed0002111 Sechium edule HOM05D000539 ORTHO05D000592 5.7e-21 105.9 62 77.4
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 9.7e-21 105.1 75 60.0
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.2e-20 104.0 95 54.7
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.4e-19 100.5 75 58.7
Sed0012130 Sechium edule HOM05D000539 ORTHO05D000592 5.3e-19 99.4 73 58.9
MELO3C028519.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-18 97.8 96 59.4
MELO3C034371.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.5e-18 97.8 96 59.4
MELO3C031391.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.9e-18 95.9 47 89.4
CsaV3_4G020790 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.9e-17 93.6 93 50.5
MELO3C000141.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.5e-17 92.4 70 58.6
Sed0020810 Sechium edule HOM05D000539 ORTHO05D000592 6.5e-17 92.4 57 73.7
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.5e-17 92.0 123 47.2
CsaV3_7G012630 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.1e-16 91.7 92 50.0
MELO3C028198.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.5e-16 90.5 70 57.1
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.2e-16 90.1 67 59.7
MELO3C029907.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.2e-16 90.1 69 56.5
CsaV3_6G021340 Cucumis sativus L. HOM05D000539 ORTHO05D000592 9.4e-16 88.6 66 57.6
CsaV3_3G024980 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.6e-15 87.8 84 52.4
MELO3C035432.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-15 87.4 73 53.4
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.7e-15 87.0 68 55.9
ClCG01G012290 Citrullus lanatus HOM05D000539 ORTHO05D000233 4.6e-15 86.3 72 61.1
MELO3C032759.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.6e-15 86.3 70 54.3
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-14 85.1 72 51.4
ClCG01G010170 Citrullus lanatus HOM05D000539 ORTHO05D000592 6.7e-14 82.4 84 50.0
MELO3C031428.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.8e-14 82.0 75 53.3
MELO3C028628.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-13 81.3 70 57.1
MELO3C031383.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.8e-12 76.3 73 49.3
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 4.1e-11 73.2 66 50.0
SalBow6G5433 Salvia bowleyana HOM05D000539 ORTHO05D000592 6.9e-11 72.4 100 35.0
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.2e-10 71.6 103 38.8
MELO3C029129.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.4e-10 70.1 86 39.5
MELO3C035043.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.5e-10 69.7 50 58.0
MELO3C028463.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-09 68.6 47 59.6
MELO3C032706.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-09 68.6 106 37.7
FAN05G1979 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.7e-09 67.8 92 35.9
FAN09G4698 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.7e-09 67.8 92 35.9
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-09 67.8 91 39.6
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-09 67.8 91 39.6
FAN07G0440 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.2e-09 67.4 92 41.3
AUR62026574 Chenopodium quinoa HOM05D002644 ORTHO05D000233 5.0e-09 66.2 93 39.8
RcHm_v2.0_Chr3g0481131 Rosa chinensis HOM05D000539 ORTHO05D000592 5.0e-09 66.2 134 30.6
MELO3C035111.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.5e-09 65.9 49 57.1
RcHm_v2.0_Chr1g0325001 Rosa chinensis HOM05D000539 ORTHO05D000592 6.5e-09 65.9 87 39.1
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 8.5e-09 65.5 118 34.7
RcHm_v2.0_Chr3g0471941 Rosa chinensis HOM05D000539 ORTHO05D000592 8.5e-09 65.5 90 36.7
MELO3C029948.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.9e-08 64.3 47 55.3
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 1.9e-08 64.3 91 37.4
RcHm_v2.0_Chr5g0023941 Rosa chinensis HOM05D000539 ORTHO05D000592 1.9e-08 64.3 124 29.8
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 1.9e-08 64.3 124 28.2
MELO3C034309.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.2e-08 63.5 34 82.4
RcHm_v2.0_Chr5g0020841 Rosa chinensis HOM05D000539 ORTHO05D000592 4.2e-08 63.2 90 35.6
MELO3C034354.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.5e-08 62.8 48 52.1
CsaV3_1G030690 Cucumis sativus L. HOM05D000539 ORTHO05D000592 7.2e-08 62.4 54 51.9
MELO3C034519.2 Cucumis melo HOM05D007110 ORTHO05D000592 9.4e-08 62.0 99 34.3
FAN28G2186 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.4e-08 62.0 92 33.7
FAN28G2905 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.4e-08 62.0 99 34.3
RcHm_v2.0_Chr4g0391241 Rosa chinensis HOM05D000539 ORTHO05D000592 9.4e-08 62.0 90 35.6
RcHm_v2.0_Chr7g0209041 Rosa chinensis HOM05D000539 ORTHO05D000592 9.4e-08 62.0 82 35.4
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-07 61.2 97 35.1
RcHm_v2.0_Chr5g0045831 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-07 61.2 138 29.0
RcHm_v2.0_Chr6g0271071 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-07 61.2 90 35.6
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.1e-07 60.8 89 38.2
Prupe.5G060800 Prunus persica HOM05D000539 ORTHO05D000592 2.1e-07 60.8 82 34.1
RcHm_v2.0_Chr2g0095661 Rosa chinensis HOM05D000539 ORTHO05D000592 2.1e-07 60.8 134 25.4
RcHm_v2.0_Chr3g0492751 Rosa chinensis HOM05D000539 ORTHO05D000592 2.1e-07 60.8 97 35.1
RcHm_v2.0_Chr7g0197301 Rosa chinensis HOM05D000539 ORTHO05D000592 2.1e-07 60.8 124 27.4
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 2.1e-07 60.8 124 27.4
FAN23G1524 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.7e-07 60.5 102 32.4
FAN28G2269 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.7e-07 60.5 102 32.4
FAN05G5337 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.6e-07 60.1 102 32.4
RcHm_v2.0_Chr4g0414241 Rosa chinensis HOM05D000539 ORTHO05D000592 3.6e-07 60.1 82 35.4
RcHm_v2.0_Chr5g0072071 Rosa chinensis HOM05D000539 ORTHO05D000592 3.6e-07 60.1 82 35.4
MELO3C028521.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.7e-07 59.7 75 49.3
CsaV3_3G021730 Cucumis sativus L. HOM05D000539 ORTHO05D000592 4.7e-07 59.7 89 34.8
FvH4_6g20174 Fragaria vesca HOM05D000539 ORTHO05D000592 4.7e-07 59.7 102 34.3
RcHm_v2.0_Chr7g0227181 Rosa chinensis HOM05D000539 ORTHO05D000592 4.7e-07 59.7 97 30.9
MELO3C031421.2 Cucumis melo HOM05D007786 ORTHO05D000592 6.1e-07 59.3 39 61.5
FAN07G2556 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.1e-07 59.3 102 32.4
FAN18G4025 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.1e-07 59.3 62 40.3
MELO3C031515.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.9e-07 58.9 85 44.7
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 7.9e-07 58.9 62 38.7
FAN06G2612 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.9e-07 58.9 102 32.4
FAN12G3432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.9e-07 58.9 81 37.0
RcHm_v2.0_Chr2g0108851 Rosa chinensis HOM05D000539 ORTHO05D000592 7.9e-07 58.9 124 26.6
RcHm_v2.0_Chr5g0072991 Rosa chinensis HOM05D000539 ORTHO05D000592 7.9e-07 58.9 93 36.6
Prupe.1G204500 Prunus persica HOM05D000539 ORTHO05D000592 1.0e-06 58.5 97 33.0
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-06 58.5 82 35.4
RcHm_v2.0_Chr4g0393851 Rosa chinensis HOM05D000539 ORTHO05D000592 1.0e-06 58.5 82 36.6
RcHm_v2.0_Chr4g0407981 Rosa chinensis HOM05D000539 ORTHO05D000592 1.0e-06 58.5 85 36.5
Prupe.1G130900 Prunus persica HOM05D000539 ORTHO05D000233 1.4e-06 58.2 97 34.0
Prupe.5G040600 Prunus persica HOM05D000539 ORTHO05D000592 1.4e-06 58.2 97 34.0
ECA246G5051 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.8e-06 57.8 85 35.3
FAN05G4673 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-06 57.8 54 38.9
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-06 57.8 54 38.9
Prupe.1G183700 Prunus persica HOM05D000539 ORTHO05D000592 1.8e-06 57.8 97 33.0
Prupe.6G137200 Prunus persica HOM05D000539 ORTHO05D000592 1.8e-06 57.8 97 34.0
vmacro13143 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 1.8e-06 57.8 97 39.2
FvH4_5g31540 Fragaria vesca HOM05D000539 ORTHO05D000592 2.3e-06 57.4 102 33.3
FAN18G0712 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-06 57.4 62 38.7
Prupe.4G253400 Prunus persica HOM05D000539 ORTHO05D000592 2.3e-06 57.4 85 34.1
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.3e-06 57.4 80 37.5
RcHm_v2.0_Chr2g0140381 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-06 57.4 145 26.2
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 2.3e-06 57.4 82 35.4
RcHm_v2.0_Chr3g0485231 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-06 57.4 82 35.4
RcHm_v2.0_Chr4g0424911 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-06 57.4 97 29.9
FvH4_3g26441 Fragaria vesca HOM05D000539 ORTHO05D000592 3.0e-06 57.0 62 38.7
FAN02G2287 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.0e-06 57.0 54 42.6
FAN08G0188 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.0e-06 57.0 62 38.7
FAN19G1903 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.0e-06 57.0 81 37.0
FAN22G0206 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.0e-06 57.0 62 38.7
FAN22G1432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.0e-06 57.0 62 38.7
FAN28G2943 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.0e-06 57.0 62 38.7
Prupe.1G174000 Prunus persica HOM05D000539 ORTHO05D000592 3.0e-06 57.0 97 33.0
RcHm_v2.0_Chr6g0275521 Rosa chinensis HOM05D000539 ORTHO05D000592 3.0e-06 57.0 124 25.8
FvH4_7g02151 Fragaria vesca HOM05D000539 ORTHO05D000592 3.9e-06 56.6 102 31.4
FAN10G3314 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.9e-06 56.6 102 31.4
FAN17G3000 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.9e-06 56.6 75 37.3
Prupe.3G103000 Prunus persica HOM05D000539 ORTHO05D000592 3.9e-06 56.6 97 32.0
Prupe.4G198900 Prunus persica HOM05D000539 ORTHO05D000592 3.9e-06 56.6 97 32.0
Prupe.5G062800 Prunus persica HOM05D000539 ORTHO05D000592 3.9e-06 56.6 97 32.0
Atru.chr1.738 Acer truncatum HOM05D000539 ORTHO05D000592 5.1e-06 56.2 70 37.1
CsaV3_3G028110 Cucumis sativus L. HOM05D007110 ORTHO05D000592 5.1e-06 56.2 63 41.3
FvH4_5g25000 Fragaria vesca HOM05D000539 ORTHO05D000592 5.1e-06 56.2 54 42.6
FAN14G5321 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.1e-06 56.2 102 31.4
Prupe.1G193900 Prunus persica HOM05D000539 ORTHO05D000592 5.1e-06 56.2 95 33.7
MELO3C031217.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.7e-06 55.8 38 60.5
CsaV3_5G020430 Cucumis sativus L. HOM05D000539 ORTHO05D000592 6.7e-06 55.8 88 38.6
FvH4_3g21081 Fragaria vesca HOM05D000539 ORTHO05D000592 6.7e-06 55.8 84 33.3
FAN04G0378 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.7e-06 55.8 89 31.5
Prupe.1G185000 Prunus persica HOM05D000539 ORTHO05D000592 6.7e-06 55.8 97 33.0
Prupe.3G107500 Prunus persica HOM05D000539 ORTHO05D000233 6.7e-06 55.8 97 33.0
Prupe.5G062900 Prunus persica HOM05D000539 ORTHO05D000592 6.7e-06 55.8 97 32.0
SHI15885 Sapria himalayana HOM05D000616 ORTHO05D000233 6.7e-06 55.8 74 35.1
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 6.7e-06 55.8 88 40.9
FvH4_4g16177 Fragaria vesca HOM05D000539 ORTHO05D000592 8.8e-06 55.5 102 32.4
FAN11G2856 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.8e-06 55.5 84 33.3
FAN22G1677 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.8e-06 55.5 83 34.9
Prupe.1G036300 Prunus persica HOM05D000539 ORTHO05D000592 8.8e-06 55.5 97 33.0
Prupe.1G310400 Prunus persica HOM05D000539 ORTHO05D000592 8.8e-06 55.5 97 33.0
Prupe.2G045600 Prunus persica HOM05D000539 ORTHO05D000592 8.8e-06 55.5 97 33.0
Prupe.5G023300 Prunus persica HOM05D000539 ORTHO05D000592 8.8e-06 55.5 97 32.0
Prupe.5G051700 Prunus persica HOM05D000539 ORTHO05D000592 8.8e-06 55.5 97 33.0
Prupe.6G142900 Prunus persica HOM05D000539 ORTHO05D000592 8.8e-06 55.5 97 32.0
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 8.8e-06 55.5 97 33.0


User provided reference genes

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