Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.8e-130 469.2 226 100.0
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.1e-74 283.9 292 56.2
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.4e-69 266.2 288 54.5
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.7e-59 233.4 288 47.9
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.6e-36 156.4 212 42.9
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 5.9e-36 155.2 212 44.3
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.9e-35 152.9 212 43.9
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 3.8e-35 152.5 211 42.7
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 8.5e-35 151.4 208 43.3
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 8.5e-35 151.4 208 43.3
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.1e-34 151.0 208 43.3
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 3.2e-34 149.4 205 43.9
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 7.9e-33 144.8 211 41.7
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.3e-32 143.3 209 41.6
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 3.9e-32 142.5 221 40.3
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 8.8e-32 141.4 200 40.0
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 2.6e-31 139.8 201 40.8
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 3.3e-31 139.4 202 39.6
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.3e-31 139.4 200 40.0
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 4.4e-31 139.0 204 41.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.3e-30 137.5 203 42.4
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.7e-30 137.1 215 38.6
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.8e-30 135.6 217 40.1
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 6.3e-30 135.2 203 39.9
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.2e-30 134.8 217 39.6
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.1e-29 134.4 213 39.0
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.1e-29 134.4 200 41.5
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.4e-29 134.0 203 38.9
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.8e-29 133.7 203 39.4
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 2.4e-29 133.3 200 40.0
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.4e-29 133.3 223 39.0
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 3.1e-29 132.9 201 40.3
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 3.1e-29 132.9 203 38.4
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 5.3e-29 132.1 208 38.9
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 5.3e-29 132.1 200 38.5
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.0e-29 131.7 217 39.2
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 7.0e-29 131.7 200 41.0
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 9.1e-29 131.3 209 37.8
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-28 131.0 217 39.2
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.2e-28 131.0 200 40.0
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.6e-28 130.6 221 37.1
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 2.0e-28 130.2 218 36.2
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.0e-28 130.2 212 36.8
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.6e-28 129.8 216 37.5
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 2.6e-28 129.8 200 38.5
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 5.9e-28 128.6 212 36.3
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 5.9e-28 128.6 200 37.5
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 7.7e-28 128.3 215 37.2
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 7.7e-28 128.3 205 38.5
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.3e-27 127.5 203 37.9
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.7e-27 127.1 219 37.0
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 2.2e-27 126.7 212 37.7
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.9e-27 126.3 210 38.1
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.9e-27 126.3 209 36.8
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 3.8e-27 125.9 204 36.8
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 3.8e-27 125.9 208 38.5
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 5.0e-27 125.6 208 36.1
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 5.0e-27 125.6 287 32.1
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 6.5e-27 125.2 204 36.8
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.5e-26 124.0 206 37.4
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.9e-26 123.6 216 37.5
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.9e-26 123.6 200 34.5
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.6e-25 119.4 212 35.4
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.6e-25 119.4 217 34.1
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 4.7e-25 119.0 208 35.6
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.4e-24 117.5 200 39.0
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.3e-24 116.7 208 34.1
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 8.8e-24 114.8 202 35.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.4e-23 112.5 201 35.8
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 5.7e-23 112.1 202 35.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.7e-23 112.1 204 38.2
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.3e-22 110.9 202 34.2
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 2.8e-22 109.8 205 35.1
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 2.4e-21 106.7 140 43.6
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 4.1e-21 105.9 193 36.3
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 5.3e-21 105.5 212 33.0
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 7.7e-20 101.7 196 32.7
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.7e-19 100.5 137 43.1
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 8.5e-19 98.2 212 32.5
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.5e-18 97.4 209 33.0
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 5.5e-18 95.5 203 29.6
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.6e-17 94.0 198 31.3
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 8.0e-17 91.7 198 31.3
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.4e-16 90.9 196 31.6
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 2.3e-16 90.1 84 51.2
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 5.2e-16 89.0 62 67.7
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 2.6e-15 86.7 62 66.1
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 7.5e-15 85.1 202 30.2
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 7.5e-15 85.1 62 64.5
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.7e-14 82.8 196 30.1
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.8e-14 82.4 95 44.2
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.4e-13 80.9 196 28.6
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.4e-13 80.9 98 45.9
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 2.4e-13 80.1 196 28.1
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.1e-13 79.7 101 43.6
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.4e-13 79.0 61 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 9.1e-13 78.2 154 29.9
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 9.1e-13 78.2 189 29.1
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.6e-12 77.4 195 28.7
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 2.0e-12 77.0 189 29.1
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.7e-12 76.6 164 31.1
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 7.7e-12 75.1 64 51.6
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.2e-11 73.6 164 26.8
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 2.2e-11 73.6 46 69.6
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 3.8e-11 72.8 84 46.4
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.1e-10 71.2 163 31.3
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.9e-10 70.5 156 28.2
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 7.2e-10 68.6 63 52.4
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 3.6e-09 66.2 91 41.8
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 6.1e-09 65.5 144 29.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.8e-08 63.9 42 66.7
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 2.3e-08 63.5 80 45.0
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.2e-07 61.2 91 40.7
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.5e-07 60.8 60 50.0
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.5e-07 60.8 59 52.5
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.6e-07 60.1 44 56.8
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 3.4e-07 59.7 84 38.1
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 4.4e-07 59.3 90 37.8
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.8e-07 58.2 30 90.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.8e-07 58.2 30 90.0
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 6.3e-06 55.5 84 36.9
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 8.3e-06 55.1 81 38.3


User provided reference genes

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