Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 0.0e+00 1285.0 647 100.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 3.2e-220 768.8 588 72.6
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.2e-193 680.6 588 65.0
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 7.7e-190 667.9 588 63.9
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.8e-153 545.4 586 53.9
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 5.8e-153 545.4 586 53.9
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.2e-151 539.7 586 53.8
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.1e-150 537.0 580 52.8
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 6.0e-150 535.4 584 52.7
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 6.0e-150 535.4 587 52.1
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 3.0e-149 533.1 585 52.0
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 5.1e-149 532.3 586 52.2
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 5.1e-149 532.3 586 52.4
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.1e-148 531.2 592 52.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 4.3e-148 529.3 588 51.5
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.8e-147 526.6 588 51.4
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 8.1e-147 525.0 593 50.9
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 5.2e-146 522.3 594 52.9
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.5e-145 520.8 583 51.3
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.4e-143 513.5 592 51.7
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 6.0e-142 508.8 592 50.7
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 7.8e-142 508.4 617 48.8
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.3e-141 507.7 595 49.9
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.3e-141 506.9 608 50.5
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.3e-141 506.9 586 50.2
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 5.1e-141 505.8 590 50.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-140 503.8 588 48.8
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 5.6e-140 502.3 525 53.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 7.3e-140 501.9 589 50.8
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-139 500.0 597 49.2
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 6.2e-139 498.8 589 49.7
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-138 498.0 581 49.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.0e-138 495.0 590 49.5
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.6e-137 493.4 578 50.0
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 7.6e-137 491.9 589 49.4
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-136 490.0 587 48.6
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 4.9e-136 489.2 577 49.9
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-135 488.0 590 49.2
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.1e-135 488.0 592 48.0
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.2e-135 486.1 608 46.9
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 5.4e-135 485.7 587 48.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 7.1e-135 485.3 582 49.5
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.6e-134 484.2 575 47.7
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.7e-134 483.4 584 48.1
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 4.6e-134 482.6 593 49.1
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 6.0e-134 482.3 589 48.9
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 7.8e-134 481.9 587 47.4
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.3e-133 480.3 588 46.9
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 3.0e-133 479.9 588 49.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 3.0e-133 479.9 574 48.4
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 5.1e-133 479.2 593 49.2
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.9e-132 477.2 588 47.1
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.9e-132 477.2 588 46.9
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.9e-132 477.2 593 49.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.3e-132 475.3 570 47.9
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.6e-131 474.2 575 49.0
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.1e-131 473.8 578 47.9
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 4.8e-131 472.6 583 47.3
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.4e-130 471.1 576 48.4
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.4e-130 470.3 589 47.4
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.0e-129 467.2 588 46.3
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.6e-129 466.8 601 46.8
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.4e-129 466.5 581 45.8
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 5.8e-129 465.7 586 47.1
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.3e-128 464.5 574 47.9
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 2.9e-128 463.4 593 47.6
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 3.8e-128 463.0 582 47.8
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-127 461.5 577 48.5
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.1e-127 461.5 577 47.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.9e-127 460.7 531 49.5
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.4e-127 460.3 581 45.3
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 5.4e-127 459.1 583 47.2
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.7e-126 456.8 586 46.8
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.7e-126 456.8 490 53.1
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.5e-126 456.4 550 49.3
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.6e-126 456.1 590 47.6
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 6.0e-126 455.7 570 47.2
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 5.1e-125 452.6 584 45.7
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 8.7e-125 451.8 583 45.1
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.5e-124 451.1 569 46.6
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 8.1e-123 445.3 531 50.8
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-121 441.4 599 45.2
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-121 441.0 599 45.2
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-120 438.0 539 48.8
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.1e-119 434.9 589 45.3
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.1e-119 434.9 578 45.2
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.1e-118 430.6 575 45.0
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.7e-118 430.3 581 44.9
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 6.0e-118 429.1 589 43.8
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 5.1e-117 426.0 593 45.0
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 8.7e-117 425.2 577 44.2
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 9.6e-116 421.8 585 44.3
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 9.6e-116 421.8 640 43.1
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.3e-115 421.4 588 43.7
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.1e-115 420.6 584 44.0
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 3.7e-115 419.9 619 43.9
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 3.7e-115 419.9 586 43.3
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 2.4e-114 417.2 580 44.7
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 4.0e-114 416.4 578 44.5
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 6.9e-114 415.6 581 43.2
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.5e-113 414.5 591 43.3
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 7.6e-113 412.1 583 43.1
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.0e-112 411.8 570 43.7
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.9e-112 410.2 516 45.3
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 4.9e-112 409.5 583 43.2
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 4.9e-112 409.5 595 43.2
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-111 408.3 583 42.9
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.1e-111 408.3 579 43.7
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.9e-111 407.5 583 43.1
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.5e-111 407.1 579 43.5
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.5e-111 407.1 583 43.1
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.2e-110 404.8 550 44.5
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.6e-110 402.9 540 47.2
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.5e-108 397.1 570 43.0
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 3.3e-108 396.7 574 43.6
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 8.2e-107 392.1 581 42.2
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 8.2e-107 392.1 581 42.2
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.6e-105 387.1 581 42.3
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.4e-105 386.7 482 46.3
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 7.7e-105 385.6 578 42.2
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.9e-103 380.9 575 42.4
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.2e-102 378.3 586 42.3
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 4.6e-102 376.3 576 41.1
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.1e-101 372.9 590 42.5
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 2.8e-99 367.1 579 40.8
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.4e-98 364.8 583 39.6
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.0e-96 358.6 596 40.9
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 9.4e-95 352.1 196 90.3
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.1e-94 350.9 570 40.7
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.5e-92 344.7 560 41.6
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 9.7e-92 342.0 574 39.0
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.9e-87 327.8 524 42.6
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 5.2e-85 319.7 573 40.0
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 9.4e-79 298.9 195 74.4
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.6e-78 297.0 575 37.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 4.0e-77 293.5 526 39.9
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 9.1e-74 282.3 580 34.3
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.9e-72 277.3 494 38.3
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 5.0e-72 276.6 575 34.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.6e-68 264.2 461 34.9
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 2.2e-67 261.2 201 63.2
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.2e-65 255.4 577 31.2
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 6.6e-64 249.6 435 34.9
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.4e-61 241.9 175 66.3
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 6.8e-61 239.6 460 33.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.5e-60 238.4 445 37.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.1e-58 230.3 385 35.3
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.6e-48 196.1 157 65.6
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.8e-46 191.0 136 66.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.6e-38 165.2 286 39.5
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 2.3e-37 161.4 239 41.0
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 8.9e-37 159.5 273 39.9
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 3.9e-32 144.1 198 38.9
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.8e-29 135.2 104 63.5
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 1.4e-26 125.6 195 33.8
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.4e-26 124.8 195 33.3
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.6e-20 104.8 79 63.3
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.3e-19 102.4 77 59.7
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.7e-19 102.1 318 29.9
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 6.2e-14 83.6 130 44.6
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 1.4e-13 82.4 197 30.5
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 1.2e-12 79.3 44 75.0
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 1.1e-07 62.8 111 31.5
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 1.9e-07 62.0 88 44.3
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 5.6e-07 60.5 109 40.4
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 9.6e-07 59.7 83 44.6
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 9.6e-07 59.7 37 70.3


User provided reference genes

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