Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033932.2 Cucumis melo HOM05D003679 ORTHO05D004265 2.0e-155 552.4 279 100.0
MELO3C031985.2 Cucumis melo HOM05D003679 ORTHO05D004265 2.3e-18 97.1 121 52.1
MELO3C022164.2 Cucumis melo HOM05D003679 ORTHO05D004265 1.5e-17 94.4 51 92.2
MELO3C029429.2 Cucumis melo HOM05D009856 ORTHO05D168850 1.1e-15 88.2 105 54.3
MELO3C031435.2 Cucumis melo HOM05D003679 ORTHO05D004265 6.0e-14 82.4 106 50.0
MELO3C022240.2 Cucumis melo HOM05D000113 ORTHO05D001798 1.0e-13 81.6 122 45.9
MELO3C034468.2 Cucumis melo HOM05D003679 ORTHO05D004265 1.2e-11 74.7 142 38.7
CsaV3_5G039850 Cucumis sativus L. HOM05D003679 ORTHO05D004265 1.4e-10 71.2 36 94.4
Haze_13962 Corylus avellana HOM05D003679 ORTHO05D004265 1.8e-10 70.9 91 47.3
ClCG08G000780 Citrullus lanatus HOM05D003679 ORTHO05D004265 2.4e-10 70.5 36 91.7
Sed0026343 Sechium edule HOM05D003679 ORTHO05D004265 2.4e-10 70.5 36 91.7
Sc23g0000050 Simmondsia chinensis HOM05D003679 ORTHO05D004265 4.0e-10 69.7 36 88.9
Phvul.011G216200 Phaseolus vulgaris HOM05D003679 ORTHO05D004265 1.2e-09 68.2 99 45.5
CSS0010343 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 1.5e-09 67.8 36 86.1
CSS0038034 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 1.5e-09 67.8 36 86.1
Cfa008063 Carpinus fangiana HOM05D003679 ORTHO05D004265 1.5e-09 67.8 91 46.2
Thecc.08G179800 Theobroma cacao HOM05D003679 ORTHO05D004265 2.0e-09 67.4 91 45.1
Actinidia03530 Actinidia chinensis HOM05D003679 ORTHO05D004265 2.6e-09 67.0 36 86.1
Actinidia29376 Actinidia chinensis HOM05D003679 ORTHO05D004265 2.6e-09 67.0 36 86.1
FvH4_2g00710 Fragaria vesca HOM05D003679 ORTHO05D004265 2.6e-09 67.0 91 46.2
FAN24G0047 Fragaria x ananassa HOM05D003679 ORTHO05D004265 2.6e-09 67.0 91 46.2
PSO063G5029 Papaver somniferum HOM05D003679 ORTHO05D004265 2.6e-09 67.0 36 83.3
PSO782G1226 Papaver somniferum HOM05D003679 ORTHO05D004265 2.6e-09 67.0 36 83.3
Potri.013G098700 Populus trichocarpa HOM05D003679 ORTHO05D004265 2.6e-09 67.0 36 83.3
RcHm_v2.0_Chr6g0251091 Rosa chinensis HOM05D003679 ORTHO05D004265 2.6e-09 67.0 36 83.3
HPP92_006341 Vanilla planifolia HOM05D003679 ORTHO05D004265 2.6e-09 67.0 36 83.3
FAN20G2916 Fragaria x ananassa HOM05D003679 ORTHO05D004265 3.4e-09 66.6 91 46.2
MD05G1002800 Malus domestica HOM05D003679 ORTHO05D004265 3.4e-09 66.6 91 45.1
Sabra13G0083300 Salix brachista HOM05D003679 ORTHO05D004265 3.4e-09 66.6 36 80.6
Sabra13G0084600 Salix brachista HOM05D003679 ORTHO05D004265 3.4e-09 66.6 36 80.6
Dinv37407 Davidia involucrata HOM05D003679 ORTHO05D004265 4.4e-09 66.2 91 46.2
FAN27G2038 Fragaria x ananassa HOM05D003679 ORTHO05D004265 4.4e-09 66.2 91 46.2
Prupe.8G006100 Prunus persica HOM05D003679 ORTHO05D004265 4.4e-09 66.2 91 46.2
FAN06G3180 Fragaria x ananassa HOM05D003679 ORTHO05D004265 5.8e-09 65.9 91 45.1
FAN06G3813 Fragaria x ananassa HOM05D003679 ORTHO05D004265 5.8e-09 65.9 91 45.1
MD10G1003500 Malus domestica HOM05D003679 ORTHO05D004265 5.8e-09 65.9 91 45.1
Nn1g09907 Nelumbo nucifera HOM05D003679 ORTHO05D004265 5.8e-09 65.9 36 83.3
TPR.G34140 Trifolium pratense HOM05D003679 ORTHO05D004265 5.8e-09 65.9 91 44.0
VMungo1127G1022 Vigna mungo HOM05D003679 ORTHO05D004265 5.8e-09 65.9 99 44.4
BcaB05g24669 Brassica carinata HOM05D003679 ORTHO05D004265 7.6e-09 65.5 36 80.6
Aa31LG7G6860 Aethionema arabicum HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
AT1G22870 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
BcaB07g32282 Brassica carinata HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
BcaC05g26193 Brassica carinata HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
BcaNung06593 Brassica carinata HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
A09p41890 Brassica napus HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
C05p21960 Brassica napus HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
BraA09t39677Z Brassica rapa HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
Thhalv10006737m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 9.9e-09 65.1 47 66.0
Lalb_Chr03g0033781 Lupinus albus HOM05D003679 ORTHO05D004265 9.9e-09 65.1 36 80.6
Lalb_Chr19g0131861 Lupinus albus HOM05D003679 ORTHO05D004265 9.9e-09 65.1 36 80.6
EL10Ac1g01279 Beta vulgaris HOM05D003679 ORTHO05D004265 1.3e-08 64.7 36 80.6
Carub.0001s2237 Capsella rubella HOM05D003679 ORTHO05D004265 1.3e-08 64.7 47 63.8
AUR62013388 Chenopodium quinoa HOM05D003679 ORTHO05D004265 1.3e-08 64.7 36 83.3
MELO3C034365.2 Cucumis melo HOM05D029363 ORTHO05D167461 1.3e-08 64.7 71 52.1
Glyma.09G002400 Glycine max HOM05D003679 ORTHO05D004265 1.3e-08 64.7 88 44.3
Psat7g228040 Pisum sativum HOM05D003679 ORTHO05D004265 1.3e-08 64.7 36 80.6
BraA07t31333Z Brassica rapa HOM05D003679 ORTHO05D004265 1.7e-08 64.3 36 77.8
CARHR291300 Cardamine hirsuta HOM05D003679 ORTHO05D004265 1.7e-08 64.3 36 77.8
AUR62038539 Chenopodium quinoa HOM05D003679 ORTHO05D004265 1.7e-08 64.3 36 80.6
Glyma.12G241900 Glycine max HOM05D003679 ORTHO05D004265 1.7e-08 64.3 88 44.3
Aa31LG4G9170 Aethionema arabicum HOM05D003679 ORTHO05D004265 2.2e-08 63.9 36 77.8
Ah.05g170420 Amaranthus hybridus HOM05D003679 ORTHO05D004265 2.2e-08 63.9 36 80.6
COL.COLO4_25139 Corchorus olitorius HOM05D003679 ORTHO05D004265 2.2e-08 63.9 36 80.6
Duzib177G0004 Durio zibethinus HOM05D003679 ORTHO05D004265 2.2e-08 63.9 91 44.0
Migut.C01386 Erythranthe guttata HOM05D003679 ORTHO05D004265 2.2e-08 63.9 36 80.6
HanXRQChr10g0298581 Helianthus annuus HOM05D003679 ORTHO05D004265 2.2e-08 63.9 36 75.0
Medtr4g030910 Medicago truncatula HOM05D003679 ORTHO05D004265 2.2e-08 63.9 36 77.8
Sp1g20350 Schrenkiella parvula HOM05D003679 ORTHO05D004265 2.2e-08 63.9 47 63.8
TAR629G3435 Trochodendron aralioides HOM05D003679 ORTHO05D004265 2.2e-08 63.9 103 42.7
GSVIVG01037227001 Vitis vinifera HOM05D003679 ORTHO05D004265 2.2e-08 63.9 91 42.9
Zm00001eb162090 Zea mays HOM05D003679 ORTHO05D004265 2.2e-08 63.9 36 80.6
Zm00001eb358200 Zea mays HOM05D003679 ORTHO05D004265 2.2e-08 63.9 36 80.6
Ca_19809_v3 Cicer arietinum L. HOM05D003679 ORTHO05D004265 2.9e-08 63.5 91 42.9
Eucgr.F04075 Eucalyptus grandis HOM05D003679 ORTHO05D004265 2.9e-08 63.5 91 42.9
Lj9C697G2 Lonicera japonica HOM05D003679 ORTHO05D004265 2.9e-08 63.5 36 80.6
QL09p001735 Quercus lobata HOM05D003679 ORTHO05D004265 2.9e-08 63.5 91 44.0
Rhsim02G0172900 Rhododendron simsii HOM05D003679 ORTHO05D004265 2.9e-08 63.5 36 77.8
vmacro11031 Vaccinium macrocarpon HOM05D003679 ORTHO05D004265 2.9e-08 63.5 36 77.8
MSTRG.25498 Avicennia marina HOM05D003679 ORTHO05D004265 3.8e-08 63.2 117 39.3
Gohir.D08G251000 Gossypium hirsutum HOM05D003679 ORTHO05D004265 3.8e-08 63.2 80 45.0
Gorai.004G267700 Gossypium raimondii HOM05D003679 ORTHO05D004265 3.8e-08 63.2 80 45.0
Mapoly0061s0106 Marchantia polymorpha HOM05D003679 ORTHO05D004265 3.8e-08 63.2 36 80.6
MSTRG.1602 Avicennia marina HOM05D003679 ORTHO05D004265 4.9e-08 62.8 36 77.8
CDE02G0262 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 4.9e-08 62.8 36 77.8
CDE09G1378 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 4.9e-08 62.8 36 77.8
Lj7C418G9 Lonicera japonica HOM05D003679 ORTHO05D004265 4.9e-08 62.8 36 75.0
Manes.18G113450 Manihot esculenta HOM05D003679 ORTHO05D004265 4.9e-08 62.8 35 80.0
Peaxi162Scf00078g00824 Petunia axillaris HOM05D003679 ORTHO05D004265 4.9e-08 62.8 36 77.8
Aqoxy4G00374 Aquilegia oxysepala HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 75.0
BcaC03g15292 Brassica carinata HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 77.8
A02p17340 Brassica napus HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 77.8
C02p28990 Brassica napus HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 77.8
BraA02t06781Z Brassica rapa HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 77.8
Dinv22115 Davidia involucrata HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 77.8
Hma1.2p1_0016F.1_g010780 Hydrangea macrophylla HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 77.8
Oeu028634.1 Olea europaea HOM05D003679 ORTHO05D004265 6.4e-08 62.4 91 41.8
Oeu028929.2 Olea europaea HOM05D003679 ORTHO05D004265 6.4e-08 62.4 91 41.8
SalBow7G3862 Salvia bowleyana HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 77.8
Solyc11g042990.2 Solanum lycopersicum HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 75.0
Sopen11g019340 Solanum pennellii HOM05D003679 ORTHO05D004265 6.4e-08 62.4 36 75.0
arahy.Tifrunner.gnm1.ann1.AU4LT2 Arachis hypogaea HOM05D003679 ORTHO05D004265 8.4e-08 62.0 91 41.8
CAN.G43.11 Capsicum annuum HOM05D003679 ORTHO05D004265 8.4e-08 62.0 47 66.0
ECA247G4018 Erigeron canadensis HOM05D003679 ORTHO05D004265 8.4e-08 62.0 36 77.8
Lj3g0002271 Lotus japonicus HOM05D003679 ORTHO05D004265 8.4e-08 62.0 36 77.8
SMO361G0595 Selaginella moellendorffii HOM05D003679 ORTHO05D004265 8.4e-08 62.0 36 77.8
SEGI_13301 Sequoiadendron giganteum HOM05D003679 ORTHO05D004265 8.4e-08 62.0 41 70.7
SGA_v2.0_scaffold118G32618 Striga asiatica HOM05D003679 ORTHO05D004265 8.4e-08 62.0 36 75.0
THA.LOC104800081 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 8.4e-08 62.0 36 77.8
unitig_37.g13075 Utricularia gibba HOM05D003679 ORTHO05D004265 8.4e-08 62.0 36 75.0
AT1G71410 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 1.1e-07 61.6 36 75.0
arahy.Tifrunner.gnm1.ann1.59G37Z Arachis hypogaea HOM05D003679 ORTHO05D004265 1.1e-07 61.6 91 40.7
Carub.0002s1826 Capsella rubella HOM05D003679 ORTHO05D004265 1.1e-07 61.6 36 75.0
CiPaw.03G013700 Carya illinoinensis HOM05D003679 ORTHO05D004265 1.1e-07 61.6 36 77.8
Ciclev10018760m.g Citrus clementina HOM05D003679 ORTHO05D004265 1.1e-07 61.6 36 80.6
Hund03114 Selenicereus undatus HOM05D003679 ORTHO05D004265 1.1e-07 61.6 39 79.5
SGA_v2.0_scaffold24G10654 Striga asiatica HOM05D003679 ORTHO05D004265 1.1e-07 61.6 35 77.1
A07p37690 Brassica napus HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 75.0
C06p45570 Brassica napus HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 75.0
BolC6t39608H Brassica oleracea HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 75.0
Thhalv10018097m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 75.0
Gohir.A05G249800 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 77.8
Gohir.D05G251500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 77.8
Gorai.009G262900 Gossypium raimondii HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 77.8
Nitab4.5_0000213g0040 Nicotiana tabacum HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 75.0
Nitab4.5_0001430g0030 Nicotiana tabacum HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 75.0
TWI18G1229 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 1.4e-07 61.2 36 75.0
AL2G31070 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 1.9e-07 60.8 36 75.0
Manes.02G207300 Manihot esculenta HOM05D003679 ORTHO05D004265 1.9e-07 60.8 36 75.0
Lsat_1_v5_gn_1_1441 Lactuca sativa HOM05D003679 ORTHO05D004265 2.4e-07 60.5 36 77.8
THA.LOC104809755 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 2.4e-07 60.5 36 75.0
ATR0602G033 Amborella trichopoda HOM05D003679 ORTHO05D004265 3.2e-07 60.1 60 56.7
BolC2t08949H Brassica oleracea HOM05D003679 ORTHO05D004265 3.2e-07 60.1 36 75.0
Cc02_g28270 Coffea canephora HOM05D003679 ORTHO05D004265 3.2e-07 60.1 36 69.4
Sp5g26570 Schrenkiella parvula HOM05D003679 ORTHO05D004265 3.2e-07 60.1 47 63.8
TWI12G0838 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 3.2e-07 60.1 36 72.2
Gohir.A05G275400 Gossypium hirsutum HOM05D003679 ORTHO05D004265 4.1e-07 59.7 36 75.0
Gohir.D05G277500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 4.1e-07 59.7 36 75.0
Cpa.g.sc21.95 Carica papaya HOM05D003679 ORTHO05D004265 5.4e-07 59.3 35 74.3
Gohir.A08G230600 Gossypium hirsutum HOM05D003679 ORTHO05D004265 5.4e-07 59.3 80 43.8
Gorai.009G290500 Gossypium raimondii HOM05D003679 ORTHO05D004265 5.4e-07 59.3 36 72.2
DCAR_003511 Daucus carota HOM05D003679 ORTHO05D004265 9.2e-07 58.5 91 39.6
PGR004G0725 Punica granatum HOM05D003679 ORTHO05D004265 9.2e-07 58.5 34 73.5
MELO3C035664.2 Cucumis melo HOM05D029363 ORTHO05D167802 1.2e-06 58.2 30 86.7
Atru.chr13.2527 Acer truncatum HOM05D003679 ORTHO05D004265 2.1e-06 57.4 36 69.4
Cc10_g16340 Coffea canephora HOM05D003679 ORTHO05D004265 2.1e-06 57.4 36 69.4
Pp3c15_10870 Physcomitrium patens HOM05D003679 ORTHO05D004265 2.1e-06 57.4 39 66.7
Pp3c9_3750 Physcomitrium patens HOM05D003679 ORTHO05D004265 2.1e-06 57.4 36 75.0
CBR_g22378 Chara braunii HOM05D003679 ORTHO05D004265 4.6e-06 56.2 35 71.4


User provided reference genes

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