Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033921.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.2e-171 605.5 302 100.0
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.8e-49 199.9 112 90.2
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-47 194.1 164 65.9
MELO3C029528.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.6e-44 182.6 110 81.8
MELO3C032029.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.1e-40 169.9 111 78.4
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-39 167.5 175 57.1
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.2e-38 163.7 126 70.6
MELO3C030143.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.6e-31 138.7 86 82.6
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 7.6e-31 138.7 122 56.6
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.9e-30 136.7 104 61.5
MELO3C033385.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.9e-30 136.0 122 67.2
MELO3C028521.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.1e-27 125.9 66 93.9
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 5.6e-26 122.5 103 54.4
MELO3C034092.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.6e-26 122.5 108 63.0
CsaV3_UNG238520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 4.8e-25 119.4 91 59.3
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.2e-25 119.0 102 52.9
MELO3C028514.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.3e-24 115.9 60 93.3
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.3e-24 115.9 83 74.7
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.0e-23 114.0 124 46.8
MELO3C031428.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.4e-23 113.2 122 50.0
CsaV3_1G030690 Cucumis sativus L. HOM05D000539 ORTHO05D000592 4.5e-23 112.8 98 56.1
MELO3C031391.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-21 107.8 135 50.4
MELO3C028519.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.2e-21 106.7 53 98.1
MELO3C034371.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.9e-19 99.8 162 46.3
MELO3C029948.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.5e-15 87.8 100 44.0
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.5e-15 86.3 100 44.0
MELO3C028463.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.5e-15 86.3 100 44.0
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-14 85.1 165 32.7
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 1.7e-14 84.3 70 58.6
MELO3C031421.2 Cucumis melo HOM05D007786 ORTHO05D000592 2.2e-14 84.0 102 46.1
MELO3C034970.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.4e-13 81.3 104 38.5
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-13 81.3 126 34.9
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-13 81.3 126 34.9
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.9e-13 80.9 104 39.4
MELO3C034519.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.9e-13 80.9 104 38.5
MELO3C030224.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.2e-13 80.1 104 38.5
MELO3C031383.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.2e-13 79.7 100 43.0
MELO3C035035.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.2e-13 79.7 104 38.5
MELO3C033823.2 Cucumis melo HOM05D007110 ORTHO05D000592 7.2e-13 79.0 63 66.7
MELO3C034746.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.3e-13 78.6 44 84.1
Sed0025384 Sechium edule HOM05D007110 ORTHO05D000592 1.2e-12 78.2 70 55.7
MELO3C032739.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.5e-12 76.6 52 75.0
MELO3C034178.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.5e-12 76.6 100 39.0
MELO3C032622.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.6e-12 76.3 44 84.1
Sed0011074 Sechium edule HOM05D007110 ORTHO05D000592 4.6e-12 76.3 84 48.8
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 6.1e-12 75.9 126 32.5
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 7.9e-12 75.5 103 35.9
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 7.9e-12 75.5 102 42.2
MELO3C027571.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-11 74.7 123 39.8
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-11 74.7 105 36.2
MELO3C027818.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.8e-11 74.3 104 37.5
MELO3C034413.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.9e-11 73.2 102 47.1
MELO3C032086.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-10 71.2 63 61.9
Sed0025775 Sechium edule HOM05D007110 ORTHO05D000592 1.9e-10 70.9 41 73.2
ClCG02G012710 Citrullus lanatus HOM05D000539 ORTHO05D000233 4.3e-10 69.7 72 48.6
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 4.3e-10 69.7 103 34.0
MELO3C030650.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.7e-10 69.3 62 59.7
MELO3C029479.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.4e-10 68.9 53 62.3
RcHm_v2.0_Chr1g0355551 Rosa chinensis HOM05D000539 ORTHO05D000592 7.4e-10 68.9 109 37.6
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.2e-09 67.4 104 32.7
SalBow3G2933 Salvia bowleyana HOM05D000539 ORTHO05D000592 2.2e-09 67.4 110 36.4
AUR62026574 Chenopodium quinoa HOM05D002644 ORTHO05D000233 2.8e-09 67.0 166 30.1
MELO3C029129.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-09 67.0 88 37.5
MELO3C029607.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.7e-09 66.6 104 36.5
Sed0014210 Sechium edule HOM05D007110 ORTHO05D000592 4.8e-09 66.2 41 68.3
Ciclev10012877m.g Citrus clementina HOM05D000539 ORTHO05D000592 8.2e-09 65.5 117 29.1
SalBow5G2382 Salvia bowleyana HOM05D000539 ORTHO05D000592 8.2e-09 65.5 88 40.9
SalBow5G3967 Salvia bowleyana HOM05D000539 ORTHO05D000592 8.2e-09 65.5 88 40.9
SalBow5G4813 Salvia bowleyana HOM05D000539 ORTHO05D000592 8.2e-09 65.5 88 40.9
CANSAT35G0077 Cannabis sativa HOM05D000539 ORTHO05D000592 1.1e-08 65.1 108 33.3
MELO3C030038.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-08 65.1 96 34.4
MELO3C034309.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-08 64.7 34 85.3
MELO3C035686.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.8e-08 64.3 44 61.4
FAN05G1979 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-08 64.3 110 35.5
FAN09G4698 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-08 64.3 110 35.5
FAN14G3091 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-08 64.3 110 35.5
FAN14G5943 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-08 64.3 110 35.5
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 1.8e-08 64.3 104 39.4
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 1.8e-08 64.3 104 42.3
Ca_04791_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.4e-08 63.9 195 26.2
Ca_18593_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.4e-08 63.9 195 26.2
MELO3C031423.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-08 63.9 44 79.5
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 2.4e-08 63.9 104 31.7
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 2.4e-08 63.9 104 31.7
Ca_05353_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.1e-08 63.5 176 26.1
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 3.1e-08 63.5 144 32.6
Atru.chr6.155 Acer truncatum HOM05D000539 ORTHO05D000592 4.1e-08 63.2 108 34.3
CANSAT64G2767 Cannabis sativa HOM05D000539 ORTHO05D000592 4.1e-08 63.2 107 32.7
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 4.1e-08 63.2 106 35.8
Ca_19281_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.3e-08 62.8 195 25.6
Ca_23902_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.3e-08 62.8 190 25.8
MELO3C028199.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.3e-08 62.8 85 36.5
MELO3C032570.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.3e-08 62.8 90 34.4
SHI32661 Sapria himalayana HOM05D000616 ORTHO05D000233 5.3e-08 62.8 135 31.9
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.9e-08 62.4 191 26.7
Sed0002737 Sechium edule HOM05D000539 ORTHO05D000592 6.9e-08 62.4 45 64.4
MELO3C031450.2 Cucumis melo HOM05D037892 ORTHO05D000592 9.0e-08 62.0 44 77.3
MELO3C034611.2 Cucumis melo HOM05D000539 ORTHO05D000233 9.0e-08 62.0 105 35.2
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-07 61.6 105 36.2
Prupe.5G060800 Prunus persica HOM05D000539 ORTHO05D000592 1.2e-07 61.6 83 37.3
RcHm_v2.0_Chr5g0020841 Rosa chinensis HOM05D000539 ORTHO05D000592 1.2e-07 61.6 110 34.5
Ca_20463_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.5e-07 61.2 196 27.0
ClCG01G012290 Citrullus lanatus HOM05D000539 ORTHO05D000233 1.5e-07 61.2 114 32.5
Medtr2g060850 Medicago truncatula HOM05D002644 ORTHO05D000592 1.5e-07 61.2 91 34.1
RcHm_v2.0_Chr6g0275521 Rosa chinensis HOM05D000539 ORTHO05D000592 1.5e-07 61.2 108 33.3
Ca_23926_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.0e-07 60.8 190 24.7
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.0e-07 60.8 105 34.3
Atru.chr1.522 Acer truncatum HOM05D000539 ORTHO05D000592 2.6e-07 60.5 106 33.0
Ca_03334_v3 Cicer arietinum L. HOM05D002644 ORTHO05D000592 3.4e-07 60.1 115 28.7
MELO3C030915.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.4e-07 60.1 117 32.5
FAN28G2186 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.4e-07 60.1 110 33.6
RcHm_v2.0_Chr6g0271071 Rosa chinensis HOM05D000539 ORTHO05D000592 3.4e-07 60.1 134 30.6
Sed0025490 Sechium edule HOM05D000539 ORTHO05D000592 3.4e-07 60.1 91 40.7
Ca_12022_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.5e-07 59.7 186 27.4
Ciclev10005682m.g Citrus clementina HOM05D000539 ORTHO05D000592 4.5e-07 59.7 111 27.0
ECA240G4466 Erigeron canadensis HOM05D000539 ORTHO05D000233 4.5e-07 59.7 190 25.8
Lsat_1_v5_gn_2_7701 Lactuca sativa HOM05D000539 ORTHO05D000592 4.5e-07 59.7 107 29.9
Lsat_1_v5_gn_7_70420 Lactuca sativa HOM05D000539 ORTHO05D000592 4.5e-07 59.7 137 27.0
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.5e-07 59.7 106 31.1
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.5e-07 59.7 106 31.1
vmacro04479 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 5.9e-07 59.3 104 32.7
Atru.chr1.1681 Acer truncatum HOM05D000539 ORTHO05D000592 7.7e-07 58.9 88 35.2
Ca_13592_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.7e-07 58.9 181 26.5
MELO3C035111.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.7e-07 58.9 44 56.8
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 7.7e-07 58.9 115 33.9
FAN15G0858 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.7e-07 58.9 117 34.2
RcHm_v2.0_Chr3g0471941 Rosa chinensis HOM05D000539 ORTHO05D000592 7.7e-07 58.9 110 33.6
RcHm_v2.0_Chr4g0391241 Rosa chinensis HOM05D000539 ORTHO05D000592 7.7e-07 58.9 110 33.6
Ca_02486_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.0e-06 58.5 175 25.1
Ca_11988_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.0e-06 58.5 94 29.8
MELO3C033304.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.0e-06 58.5 115 33.0
MELO3C033511.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-06 58.5 105 33.3
FAN28G2905 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.0e-06 58.5 117 34.2
RcHm_v2.0_Chr5g0066141 Rosa chinensis HOM05D000539 ORTHO05D000592 1.0e-06 58.5 109 33.0
Sed0012130 Sechium edule HOM05D000539 ORTHO05D000592 1.0e-06 58.5 57 47.4
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 1.3e-06 58.2 109 33.9
Ca_19885_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-06 58.2 180 25.6
MELO3C030161.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-06 58.2 105 36.2
MELO3C033275.2 Cucumis melo HOM05D013245 ORTHO05D000592 1.3e-06 58.2 44 56.8
RcHm_v2.0_Chr3g0481131 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-06 58.2 104 33.7
MELO3C034478.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.7e-06 57.8 31 80.6
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 1.7e-06 57.8 87 32.2
MELO3C029127.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.2e-06 57.4 79 38.0
Ca_03880_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.9e-06 57.0 111 32.4
Ca_23714_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.9e-06 57.0 178 26.4
MELO3C031515.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.9e-06 57.0 66 54.5
FAN23G1195 Fragaria x ananassa HOM05D000723 ORTHO05D001760 2.9e-06 57.0 115 33.0
FAN23G1524 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.9e-06 57.0 120 32.5
FAN28G2269 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.9e-06 57.0 120 32.5
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 2.9e-06 57.0 109 38.5
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 2.9e-06 57.0 108 30.6
Ca_05401_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.8e-06 56.6 184 25.5
Prupe.1G183700 Prunus persica HOM05D000539 ORTHO05D000592 3.8e-06 56.6 83 37.3
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 3.8e-06 56.6 167 26.9
MELO3C034551.2 Cucumis melo HOM05D007110 ORTHO05D000233 5.0e-06 56.2 114 33.3
FvH4_2g11482 Fragaria vesca HOM05D000539 ORTHO05D000592 5.0e-06 56.2 106 31.1
MD01G1047900 Malus domestica HOM05D000539 ORTHO05D000592 5.0e-06 56.2 69 44.9
Prupe.5G040600 Prunus persica HOM05D000539 ORTHO05D000592 5.0e-06 56.2 83 37.3
RcHm_v2.0_Chr5g0045831 Rosa chinensis HOM05D000539 ORTHO05D000592 5.0e-06 56.2 108 32.4
RcHm_v2.0_Chr7g0209041 Rosa chinensis HOM05D000539 ORTHO05D000592 5.0e-06 56.2 108 30.6
SalBow6G4879 Salvia bowleyana HOM05D000539 ORTHO05D000592 5.0e-06 56.2 108 32.4
SalBow7G1279 Salvia bowleyana HOM05D000539 ORTHO05D000592 5.0e-06 56.2 108 31.5
Ca_12950_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.5e-06 55.8 181 26.0
FAN07G2556 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.5e-06 55.8 120 32.5
Prupe.4G253400 Prunus persica HOM05D000539 ORTHO05D000592 6.5e-06 55.8 83 36.1
RcHm_v2.0_Chr7g0228381 Rosa chinensis HOM05D000539 ORTHO05D000592 6.5e-06 55.8 108 30.6
Ciclev10017703m.g Citrus clementina HOM05D000539 ORTHO05D000592 8.5e-06 55.5 89 28.1
MELO3C032671.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.5e-06 55.5 49 59.2
FAN06G2612 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-06 55.5 120 32.5
Lsat_1_v5_gn_4_34001 Lactuca sativa HOM05D000539 ORTHO05D000592 8.5e-06 55.5 110 29.1
Prupe.2G062000 Prunus persica HOM05D000539 ORTHO05D000592 8.5e-06 55.5 123 30.9
RcHm_v2.0_Chr4g0407981 Rosa chinensis HOM05D000539 ORTHO05D000592 8.5e-06 55.5 108 31.5
Sed0002111 Sechium edule HOM05D000539 ORTHO05D000592 8.5e-06 55.5 42 61.9


User provided reference genes

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