Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033920.2 Cucumis melo HOM05D006638 ORTHO05D008246 1.1e-84 316.6 158 100.0
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 1.2e-22 110.5 118 56.8
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 3.6e-16 89.0 112 49.1
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 1.8e-15 86.7 112 49.1
Sed0019776 Sechium edule HOM05D006638 ORTHO05D008246 7.1e-12 74.7 54 66.7
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 1.3e-10 70.5 112 41.1
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 3.0e-10 69.3 112 41.1
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 5.1e-10 68.6 62 56.5
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 5.1e-10 68.6 99 44.4
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 8.6e-10 67.8 112 41.1
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 8.6e-10 67.8 112 41.1
Phvul.010G071600 Phaseolus vulgaris HOM05D006638 ORTHO05D008246 1.5e-09 67.0 100 42.0
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 1.5e-09 67.0 100 44.0
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 1.9e-09 66.6 100 43.0
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 2.5e-09 66.2 121 41.3
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 2.5e-09 66.2 101 43.6
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 4.3e-09 65.5 60 56.7
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 4.3e-09 65.5 111 40.5
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 5.6e-09 65.1 111 40.5
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 7.3e-09 64.7 99 42.4
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 7.3e-09 64.7 100 41.0
Sc23g0003780 Simmondsia chinensis HOM05D006638 ORTHO05D008246 7.3e-09 64.7 100 41.0
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 9.5e-09 64.3 99 42.4
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 9.5e-09 64.3 54 61.1
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 1.2e-08 63.9 59 57.6
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 1.6e-08 63.5 99 43.4
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 1.6e-08 63.5 100 42.0
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 2.1e-08 63.2 100 42.0
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 2.1e-08 63.2 100 42.0
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 2.1e-08 63.2 100 42.0
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 2.1e-08 63.2 111 38.7
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 2.1e-08 63.2 104 40.4
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 2.1e-08 63.2 111 39.6
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 2.1e-08 63.2 62 51.6
AL1G23530 Arabidopsis lyrata HOM05D006638 ORTHO05D008246 2.8e-08 62.8 99 40.4
AT1G12244 Arabidopsis thaliana HOM05D006638 ORTHO05D008246 2.8e-08 62.8 99 40.4
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 2.8e-08 62.8 112 37.5
Carub.0001s1192 Capsella rubella HOM05D006638 ORTHO05D008246 2.8e-08 62.8 99 40.4
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.8e-08 62.8 50 62.0
Gohir.D12G097700 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.8e-08 62.8 50 62.0
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 2.8e-08 62.8 50 62.0
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 3.6e-08 62.4 111 41.4
Manes.17G011000 Manihot esculenta HOM05D006638 ORTHO05D008246 3.6e-08 62.4 100 42.0
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 3.6e-08 62.4 99 42.4
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 3.6e-08 62.4 59 61.0
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 4.7e-08 62.0 112 38.4
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 4.7e-08 62.0 50 58.0
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 6.2e-08 61.6 99 39.4
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 6.2e-08 61.6 100 41.0
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 8.1e-08 61.2 112 38.4
FAN01G0965 Fragaria x ananassa HOM05D006638 ORTHO05D008246 8.1e-08 61.2 47 63.8
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 8.1e-08 61.2 101 38.6
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 8.1e-08 61.2 101 38.6
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 8.1e-08 61.2 101 38.6
CAN.G1872.5 Capsicum annuum HOM05D006638 ORTHO05D008246 1.1e-07 60.8 50 58.0
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.1e-07 60.8 100 41.0
Hma1.2p1_0001F.1_g001250 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 1.1e-07 60.8 49 63.3
Nitab4.5_0000859g0190 Nicotiana tabacum HOM05D006638 ORTHO05D008246 1.1e-07 60.8 101 38.6
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 1.1e-07 60.8 101 38.6
THA.LOC104809455 Tarenaya hassleriana HOM05D006638 ORTHO05D008246 1.1e-07 60.8 99 41.4
vmacro21035 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 1.1e-07 60.8 51 60.8
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.4e-07 60.5 100 41.0
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 1.4e-07 60.5 99 41.4
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 1.4e-07 60.5 49 61.2
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 1.4e-07 60.5 99 41.4
BcaC07g41715 Brassica carinata HOM05D006638 ORTHO05D008246 1.8e-07 60.1 99 39.4
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 1.8e-07 60.1 48 62.5
BolC8t52292H Brassica oleracea HOM05D006638 ORTHO05D008246 2.3e-07 59.7 99 39.4
CARHR012550 Cardamine hirsuta HOM05D006638 ORTHO05D008246 2.3e-07 59.7 111 38.7
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 2.3e-07 59.7 100 41.0
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 2.3e-07 59.7 104 41.3
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 2.3e-07 59.7 101 39.6
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 3.1e-07 59.3 62 48.4
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 3.1e-07 59.3 54 57.4
HPP92_022319 Vanilla planifolia HOM05D006638 ORTHO05D008246 3.1e-07 59.3 51 58.8
HPP92_022327 Vanilla planifolia HOM05D006638 ORTHO05D008246 3.1e-07 59.3 51 58.8
Ah.01g003990 Amaranthus hybridus HOM05D006638 ORTHO05D008246 4.0e-07 58.9 50 58.0
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 5.2e-07 58.5 50 58.0
BcaC07g42567 Brassica carinata HOM05D006638 ORTHO05D008246 5.2e-07 58.5 99 38.4
C08p47510 Brassica napus HOM05D006638 ORTHO05D008246 5.2e-07 58.5 99 37.4
BraA09t41748Z Brassica rapa HOM05D006638 ORTHO05D008246 5.2e-07 58.5 99 38.4
Lj1g0022300 Lotus japonicus HOM05D006638 ORTHO05D008246 5.2e-07 58.5 135 31.9
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 6.8e-07 58.2 99 40.4
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 8.9e-07 57.8 104 38.5
Thhalv10008640m.g Eutrema salsugineum HOM05D006638 ORTHO05D008246 8.9e-07 57.8 99 37.4
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 8.9e-07 57.8 112 34.8
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 5.8e-06 55.1 112 35.7
Cc02_g24450 Coffea canephora HOM05D006638 ORTHO05D008246 7.6e-06 54.7 99 39.4
TPR.G27556 Trifolium pratense HOM05D006638 ORTHO05D008246 9.9e-06 54.3 99 39.4


User provided reference genes

Program Settings