Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 4.6e-79 297.7 142 100.0
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.0e-07 57.8 69 44.9
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.0e-07 57.8 69 44.9
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 8.0e-07 57.8 69 44.9
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.8e-06 56.6 68 45.6
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 2.3e-06 56.2 69 44.9
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.0e-06 55.8 38 65.8
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 3.0e-06 55.8 69 44.9
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 3.0e-06 55.8 69 44.9
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 4.0e-06 55.5 69 44.9
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 4.0e-06 55.5 69 44.9
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 4.0e-06 55.5 69 44.9
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 4.0e-06 55.5 69 43.5
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 4.0e-06 55.5 69 44.9
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 5.2e-06 55.1 69 43.5
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 5.2e-06 55.1 78 42.3
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 42.0
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 5.2e-06 55.1 69 43.5
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 40 65.0
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 42.0
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 6.8e-06 54.7 40 65.0
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 6.8e-06 54.7 40 65.0
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 6.8e-06 54.7 40 65.0
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 6.8e-06 54.7 40 65.0
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 6.8e-06 54.7 29 79.3
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 6.8e-06 54.7 40 65.0
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 42.0
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 6.8e-06 54.7 40 65.0
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 42.0
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 43.5
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 6.8e-06 54.7 69 42.0
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 8.9e-06 54.3 40 65.0
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 8.9e-06 54.3 69 42.0
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 8.9e-06 54.3 69 42.0
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 8.9e-06 54.3 67 47.8
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 8.9e-06 54.3 47 59.6
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 8.9e-06 54.3 40 65.0
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 8.9e-06 54.3 69 42.0
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 8.9e-06 54.3 40 62.5


User provided reference genes

Program Settings