Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033823.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.8e-70 267.7 133 100.0
MELO3C032739.2 Cucumis melo HOM05D007110 ORTHO05D000592 9.8e-23 110.5 139 51.1
MELO3C032622.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.1e-21 107.1 62 85.5
MELO3C034746.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-21 105.9 58 82.8
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.9e-20 101.3 59 79.7
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.7e-20 100.9 58 81.0
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.7e-19 99.8 55 85.5
MELO3C028521.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.6e-19 97.4 55 83.6
MELO3C030857.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.2e-18 95.1 57 80.7
Sed0025775 Sechium edule HOM05D007110 ORTHO05D000592 1.2e-17 93.6 57 70.2
MELO3C030650.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.6e-17 93.2 57 77.2
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 8.0e-17 90.9 58 67.2
MELO3C031391.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-16 89.0 60 73.3
Sed0014210 Sechium edule HOM05D007110 ORTHO05D000592 3.0e-16 89.0 57 66.7
MELO3C032086.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-15 86.7 56 76.8
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.5e-15 86.7 56 73.2
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 2.0e-15 86.3 56 71.4
MELO3C035686.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.2e-14 82.8 59 62.7
Sed0025384 Sechium edule HOM05D007110 ORTHO05D000592 4.9e-14 81.6 58 60.3
MELO3C033921.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.3e-14 81.3 63 66.7
MELO3C031423.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.3e-14 80.9 62 71.0
MELO3C032621.2 Cucumis melo HOM05D007110 ORTHO05D168596 1.4e-13 80.1 49 79.6
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-13 79.7 55 65.5
MELO3C028463.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-13 79.7 55 65.5
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-13 79.3 55 65.5
CsaV3_1G030690 Cucumis sativus L. HOM05D000539 ORTHO05D000592 7.0e-13 77.8 58 60.3
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 9.2e-13 77.4 55 63.6
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-12 77.0 55 65.5
MELO3C031450.2 Cucumis melo HOM05D037892 ORTHO05D000592 2.0e-12 76.3 54 74.1
MELO3C032029.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.7e-12 75.9 86 50.0
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.7e-12 75.9 56 62.5
MELO3C033275.2 Cucumis melo HOM05D013245 ORTHO05D000592 4.5e-12 75.1 58 56.9
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 1.7e-11 73.2 71 54.9
MELO3C033385.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.3e-11 72.8 40 90.0
MELO3C035111.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.6e-11 71.2 49 63.3
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 1.1e-10 70.5 58 50.0
MELO3C031428.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.1e-10 70.5 47 66.0
MELO3C029948.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.3e-10 68.9 46 65.2
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 4.3e-10 68.6 58 48.3
Sed0004440 Sechium edule HOM05D000539 ORTHO05D000592 9.5e-10 67.4 57 50.9
Sed0011074 Sechium edule HOM05D007110 ORTHO05D000592 9.5e-10 67.4 56 57.1
Sed0014995 Sechium edule HOM05D000539 ORTHO05D000592 9.5e-10 67.4 57 50.9
Sed0019579 Sechium edule HOM05D000539 ORTHO05D000592 9.5e-10 67.4 57 50.9
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 9.5e-10 67.4 71 50.7
MELO3C032671.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.6e-09 66.6 53 62.3
MELO3C034519.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.1e-09 66.2 56 48.2
MELO3C035035.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.1e-09 66.2 56 48.2
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.8e-09 65.9 58 46.6
MELO3C027818.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-09 65.9 56 48.2
MELO3C027996.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-09 65.9 55 49.1
MELO3C028238.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-09 65.9 56 48.2
MELO3C032631.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-09 65.9 60 45.0
MELO3C034440.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-09 65.9 56 48.2
Sed0016665 Sechium edule HOM05D000539 ORTHO05D000592 2.8e-09 65.9 57 49.1
Sed0019626 Sechium edule HOM05D000539 ORTHO05D000592 2.8e-09 65.9 57 49.1
MELO3C033140.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.6e-09 65.5 79 44.3
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 3.6e-09 65.5 54 50.0
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 3.6e-09 65.5 54 51.9
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 3.6e-09 65.5 54 51.9
Sed0000174 Sechium edule HOM05D000539 ORTHO05D000592 3.6e-09 65.5 57 49.1
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.7e-09 65.1 61 44.3
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 4.7e-09 65.1 54 50.0
Sed0011271 Sechium edule HOM05D000539 ORTHO05D000592 4.7e-09 65.1 57 49.1
MELO3C034491.2 Cucumis melo HOM05D007110 ORTHO05D000592 6.1e-09 64.7 61 42.6
MD01G1047900 Malus domestica HOM05D000539 ORTHO05D000592 6.1e-09 64.7 56 46.4
MELO3C034500.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.0e-09 64.3 59 45.8
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 8.0e-09 64.3 59 50.8
MELO3C031430.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.0e-08 63.9 56 46.4
MELO3C029153.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.4e-08 63.5 55 47.3
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.4e-08 63.5 51 64.7
MELO3C034178.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.4e-08 63.5 47 57.4
MELO3C030161.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.8e-08 63.2 105 38.1
MELO3C034551.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.8e-08 63.2 55 47.3
MELO3C035417.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.8e-08 63.2 60 43.3
MELO3C032064.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.3e-08 62.8 62 41.9
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.3e-08 62.8 59 49.2
MELO3C034970.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.3e-08 62.8 56 42.9
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.1e-08 62.4 59 49.2
MELO3C033511.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.1e-08 62.4 59 49.2
RcHm_v2.0_Chr1g0352291 Rosa chinensis HOM05D000539 ORTHO05D000233 3.1e-08 62.4 90 44.4
MELO3C027681.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.0e-08 62.0 58 43.1
MELO3C030224.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.0e-08 62.0 55 49.1
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.0e-08 62.0 61 49.2
MELO3C034478.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.2e-08 61.6 33 81.8
MELO3C033279.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.8e-08 61.2 59 47.5
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 8.9e-08 60.8 95 38.9
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 8.9e-08 60.8 55 50.9
SHI06731 Sapria himalayana HOM05D007110 ORTHO05D000233 1.2e-07 60.5 56 51.8
ECA232G2064 Erigeron canadensis HOM05D000539 ORTHO05D000592 1.5e-07 60.1 110 30.9
SHI14002 Sapria himalayana HOM05D000616 ORTHO05D000233 1.5e-07 60.1 70 44.3
MELO3C030851.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.0e-07 59.7 75 41.3
MELO3C033304.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.0e-07 59.7 54 46.3
MELO3C034305.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.0e-07 59.7 61 41.0
MELO3C034533.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.0e-07 59.7 59 47.5
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 2.0e-07 59.7 56 55.4
SHI38698 Sapria himalayana HOM05D000616 ORTHO05D000233 2.0e-07 59.7 56 50.0
Atru.chr6.155 Acer truncatum HOM05D000539 ORTHO05D000592 2.6e-07 59.3 51 52.9
SHI22978 Sapria himalayana HOM05D000616 ORTHO05D000233 2.6e-07 59.3 56 50.0
MELO3C032063.2 Cucumis melo HOM05D013245 ORTHO05D000592 3.4e-07 58.9 51 51.0
RcHm_v2.0_Chr7g0227321 Rosa chinensis HOM05D000539 ORTHO05D000233 3.4e-07 58.9 56 51.8
MELO3C035129.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.4e-07 58.5 52 44.2
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 4.4e-07 58.5 95 38.9
RcHm_v2.0_Chr3g0494801 Rosa chinensis HOM05D000539 ORTHO05D000592 4.4e-07 58.5 56 51.8
SHI42493 Sapria himalayana HOM05D000616 ORTHO05D000233 4.4e-07 58.5 51 54.9
MELO3C034518.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.8e-07 58.2 58 46.6
SHI19610 Sapria himalayana HOM05D000616 ORTHO05D000233 5.8e-07 58.2 52 53.8
SHI19985 Sapria himalayana HOM05D000616 ORTHO05D000233 5.8e-07 58.2 55 49.1
SHI29962 Sapria himalayana HOM05D000616 ORTHO05D000233 5.8e-07 58.2 51 54.9
Ca_20463_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.5e-07 57.8 121 29.8
MELO3C029201.2 Cucumis melo HOM05D007110 ORTHO05D000592 7.5e-07 57.8 58 39.7
SHI29099 Sapria himalayana HOM05D000616 ORTHO05D000233 7.5e-07 57.8 55 50.9
SHI35917 Sapria himalayana HOM05D000616 ORTHO05D000233 7.5e-07 57.8 56 48.2
Atru.chr7.1246 Acer truncatum HOM05D000539 ORTHO05D000592 9.8e-07 57.4 52 50.0
MELO3C032025.2 Cucumis melo HOM05D013245 ORTHO05D000592 9.8e-07 57.4 56 48.2
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 9.8e-07 57.4 56 51.8
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 9.8e-07 57.4 56 51.8
SHI00755 Sapria himalayana HOM05D000616 ORTHO05D000233 9.8e-07 57.4 52 51.9
SHI36792 Sapria himalayana HOM05D000616 ORTHO05D000062 9.8e-07 57.4 55 50.9
Ciclev10012877m.g Citrus clementina HOM05D000539 ORTHO05D000592 1.3e-06 57.0 56 44.6
PSO170G4584 Papaver somniferum HOM05D000539 ORTHO05D000233 1.3e-06 57.0 104 26.9
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 1.3e-06 57.0 104 26.9
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.3e-06 57.0 56 39.3
SHI19528 Sapria himalayana HOM05D000616 ORTHO05D000233 1.3e-06 57.0 56 48.2
CSS0026465 Camellia sinensis var. sinensis HOM05D000539 ORTHO05D000233 1.7e-06 56.6 72 34.7
Ca_07064_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.7e-06 56.6 62 40.3
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 1.7e-06 56.6 102 28.4
Rhsim03G0043700 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.7e-06 56.6 56 41.1
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.7e-06 56.6 56 41.1
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.7e-06 56.6 56 41.1
RhsimUnG0040200 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.7e-06 56.6 56 41.1
SHI38771 Sapria himalayana HOM05D000616 ORTHO05D000233 1.7e-06 56.6 56 50.0
SHI42234 Sapria himalayana HOM05D000616 ORTHO05D000233 1.7e-06 56.6 88 40.9
SHI43638 Sapria himalayana HOM05D000616 ORTHO05D000233 1.7e-06 56.6 52 51.9
SHI43952 Sapria himalayana HOM05D000616 ORTHO05D000233 1.7e-06 56.6 59 49.2
SHI22555 Sapria himalayana HOM05D000616 ORTHO05D000233 2.2e-06 56.2 56 46.4
SHI25573 Sapria himalayana HOM05D000616 ORTHO05D000233 2.2e-06 56.2 55 49.1
SHI37661 Sapria himalayana HOM05D000616 ORTHO05D000233 2.2e-06 56.2 59 47.5
vmacro04479 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 2.2e-06 56.2 64 43.8
Ca_03334_v3 Cicer arietinum L. HOM05D002644 ORTHO05D000592 2.9e-06 55.8 72 34.7
MELO3C028519.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.9e-06 55.8 31 83.9
MELO3C034786.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.9e-06 55.8 61 45.9
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 2.9e-06 55.8 61 39.3
CANSAT35G0077 Cannabis sativa HOM05D000539 ORTHO05D000592 3.7e-06 55.5 62 41.9
CANSAT64G2767 Cannabis sativa HOM05D000539 ORTHO05D000592 3.7e-06 55.5 62 41.9
MELO3C028509.2 Cucumis melo HOM05D007786 ORTHO05D169660 3.7e-06 55.5 32 78.1
CsaV3_UNG238520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 3.7e-06 55.5 34 67.6
PSO541G5385 Papaver somniferum HOM05D000539 ORTHO05D000233 3.7e-06 55.5 102 27.5
Atru.chr1.522 Acer truncatum HOM05D000539 ORTHO05D000592 4.9e-06 55.1 54 44.4
Ca_23926_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.9e-06 55.1 62 37.1
MELO3C031553.2 Cucumis melo HOM05D013245 ORTHO05D000592 4.9e-06 55.1 46 47.8
SHI14858 Sapria himalayana HOM05D000616 ORTHO05D000233 4.9e-06 55.1 60 45.0
Ca_04527_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.4e-06 54.7 72 33.3
Ca_04791_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.4e-06 54.7 62 37.1
Ca_12022_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.4e-06 54.7 121 28.1
Ca_18593_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.4e-06 54.7 62 37.1
Ca_19281_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.4e-06 54.7 62 37.1
Ca_23902_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.4e-06 54.7 62 37.1
MELO3C029528.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.4e-06 54.7 32 75.0
Rhsim05G0213000 Rhododendron simsii HOM05D000539 ORTHO05D000233 6.4e-06 54.7 81 34.6
SHI14115 Sapria himalayana HOM05D000616 ORTHO05D000233 6.4e-06 54.7 52 51.9
Ca_06949_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 8.3e-06 54.3 110 25.5
PSO455G0104 Papaver somniferum HOM05D022837 ORTHO05D000233 8.3e-06 54.3 96 26.0
SHI36746 Sapria himalayana HOM05D000616 ORTHO05D000233 8.3e-06 54.3 51 52.9


User provided reference genes

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