Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 3.6e-125 452.6 459 100.0
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.4e-116 424.1 458 94.8
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 6.8e-31 139.4 457 69.4
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 2.9e-26 124.0 435 34.5
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.9e-26 124.0 104 58.7
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 2.8e-24 117.5 91 60.4
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.4e-23 115.2 470 40.6
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 5.8e-22 109.8 104 51.9
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.3e-21 108.6 96 52.1
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.7e-21 108.2 74 73.0
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 6.4e-21 106.3 84 59.5
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 8.3e-21 105.9 74 66.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.1e-20 105.5 91 56.0
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.4e-20 105.1 71 70.4
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 2.4e-20 104.4 74 64.9
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 2.4e-20 104.4 91 54.9
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 3.2e-20 104.0 103 51.5
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 7.0e-20 102.8 74 63.5
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 7.0e-20 102.8 91 53.8
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 7.0e-20 102.8 71 69.0
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 1.2e-19 102.1 73 67.1
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 2.0e-19 101.3 74 63.5
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 2.7e-19 100.9 103 50.5
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.3e-18 98.6 64 71.9
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 1.3e-18 98.6 71 64.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 3.0e-18 97.4 74 62.2
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 3.0e-18 97.4 71 66.2
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.1e-17 95.5 464 34.3
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.1e-17 95.5 464 34.3
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.1e-17 95.5 89 52.8
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 1.1e-17 95.5 70 61.4
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 1.5e-17 95.1 70 68.6
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.9e-17 94.7 71 63.4
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 2.5e-17 94.4 104 46.2
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 5.6e-17 93.2 74 58.1
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 7.3e-17 92.8 92 48.9
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 1.6e-16 91.7 70 62.9
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 1.6e-16 91.7 71 62.0
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 2.1e-16 91.3 72 63.9
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 2.1e-16 91.3 73 57.5
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 2.1e-16 91.3 71 62.0
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 2.8e-16 90.9 72 62.5
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 3.6e-16 90.5 71 60.6
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 4.7e-16 90.1 72 58.3
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 1.1e-15 89.0 71 60.6
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 1.1e-15 89.0 70 58.6
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.4e-15 88.6 68 64.7
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.8e-15 88.2 71 62.0
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.8e-15 88.2 69 59.4
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 4.0e-15 87.0 71 62.0
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 5.2e-15 86.7 70 61.4
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 6.8e-15 86.3 63 66.7
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 8.9e-15 85.9 73 57.5
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 8.9e-15 85.9 73 57.5
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.5e-14 85.1 104 36.5
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 4.4e-14 83.6 70 55.7
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 5.8e-14 83.2 71 60.6
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 5.8e-14 83.2 64 60.9
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 7.5e-14 82.8 74 52.7
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 9.8e-14 82.4 70 55.7
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.3e-13 82.0 64 59.4
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.2e-13 81.3 54 64.8
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.2e-13 81.3 54 64.8
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 2.2e-13 81.3 71 53.5
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 2.2e-13 81.3 69 56.5
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 3.7e-13 80.5 75 46.7
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.7e-13 80.5 61 55.7
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 3.7e-13 80.5 61 55.7
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 4.9e-13 80.1 68 57.4
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 4.9e-13 80.1 61 54.1
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 8.3e-13 79.3 68 57.4
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 8.3e-13 79.3 61 54.1
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 8.3e-13 79.3 61 54.1
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.4e-12 78.6 64 51.6
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.4e-12 78.6 68 54.4
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.9e-12 78.2 64 53.1
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.9e-12 78.2 64 53.1
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.4e-12 77.8 71 49.3
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.2e-12 77.4 64 51.6
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 3.2e-12 77.4 61 50.8
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 4.1e-12 77.0 64 51.6
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 4.1e-12 77.0 61 55.7
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 5.4e-12 76.6 61 57.4
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 7.0e-12 76.3 70 54.3
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 7.0e-12 76.3 68 52.9
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 7.0e-12 76.3 70 52.9
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.2e-11 75.5 75 45.3
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.6e-11 75.1 59 59.3
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 2.1e-11 74.7 61 55.7
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 2.1e-11 74.7 69 55.1
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 2.1e-11 74.7 69 55.1
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 2.1e-11 74.7 63 54.0
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 2.1e-11 74.7 63 54.0
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 2.7e-11 74.3 61 55.7
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 2.7e-11 74.3 61 55.7
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.7e-11 74.3 61 55.7
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 3.5e-11 73.9 64 57.8
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 3.5e-11 73.9 55 54.5
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 7.8e-11 72.8 64 56.2
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 7.8e-11 72.8 248 49.2
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.0e-10 72.4 62 56.5
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.7e-10 71.6 72 48.6
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.7e-10 71.6 66 54.5
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.3e-10 71.2 60 55.0
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 3.0e-10 70.9 72 47.2
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 3.0e-10 70.9 66 54.5
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 5.0e-10 70.1 71 47.9
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 8.6e-10 69.3 66 48.5
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 8.6e-10 69.3 66 48.5
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 8.6e-10 69.3 70 47.1
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.5e-09 68.6 73 43.8
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.5e-09 67.8 55 58.2
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 5.6e-09 66.6 50 58.0
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.6e-08 65.1 61 47.5
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 3.6e-08 63.9 47 57.4
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 4.7e-08 63.5 209 30.1
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 6.2e-08 63.2 52 51.9
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 8.1e-08 62.8 68 44.1
MELO3C004015.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.1e-07 62.4 48 60.4
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 1.1e-07 62.4 50 58.0
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 1.4e-07 62.0 48 58.3
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.4e-07 62.0 66 47.0
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 1.8e-07 61.6 48 60.4
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 2.3e-07 61.2 46 56.5
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 4.0e-07 60.5 65 46.2
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 6.8e-07 59.7 46 54.3
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 4.4e-06 57.0 61 47.5
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 9.9e-06 55.8 37 67.6


User provided reference genes

Program Settings