Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033764.2 Cucumis melo HOM05D001525 ORTHO05D001397 4.2e-44 181.0 94 100.0
MELO3C025477.2 Cucumis melo HOM05D001525 ORTHO05D001397 2.1e-19 99.0 50 100.0
CsaV3_5G026200 Cucumis sativus L. HOM05D001525 ORTHO05D001397 4.6e-19 97.8 50 98.0
ClCG09G020240 Citrullus lanatus HOM05D001525 ORTHO05D001397 5.1e-18 94.4 50 96.0
Sed0019196 Sechium edule HOM05D001525 ORTHO05D001397 8.2e-16 87.0 50 88.0
Sed0008434 Sechium edule HOM05D001525 ORTHO05D001397 4.5e-14 81.3 50 80.0
Gohir.D06G173400 Gossypium hirsutum HOM05D001525 ORTHO05D001397 2.5e-12 75.5 47 80.9
Gorai.010G202600 Gossypium raimondii HOM05D001525 ORTHO05D001397 2.5e-12 75.5 47 80.9
COL.COLO4_10918 Corchorus olitorius HOM05D001525 ORTHO05D001397 4.2e-12 74.7 47 85.1
Gohir.A06G177400 Gossypium hirsutum HOM05D001525 ORTHO05D001397 5.5e-12 74.3 47 78.7
Lj1g0004403 Lotus japonicus HOM05D001525 ORTHO05D001397 5.5e-12 74.3 45 82.2
Thecc.10G058000 Theobroma cacao HOM05D001525 ORTHO05D001397 5.5e-12 74.3 47 85.1
Thecc.10G058300 Theobroma cacao HOM05D001525 ORTHO05D001397 5.5e-12 74.3 44 86.4
CiPaw.01G281800 Carya illinoinensis HOM05D001525 ORTHO05D001397 7.2e-12 73.9 44 84.1
Duzib128G1221 Durio zibethinus HOM05D001525 ORTHO05D001397 7.2e-12 73.9 44 84.1
QL08p057905 Quercus lobata HOM05D001525 ORTHO05D001397 9.4e-12 73.6 44 84.1
Prupe.2G227200 Prunus persica HOM05D001525 ORTHO05D001397 2.7e-11 72.0 46 80.4
Actinidia25065 Actinidia chinensis HOM05D001525 ORTHO05D001397 3.6e-11 71.6 50 74.0
Actinidia34343 Actinidia chinensis HOM05D001525 ORTHO05D001397 3.6e-11 71.6 50 74.0
RcHm_v2.0_Chr1g0365441 Rosa chinensis HOM05D001525 ORTHO05D001397 3.6e-11 71.6 44 81.8
VMungo1383G1982 Vigna mungo HOM05D001525 ORTHO05D001397 3.6e-11 71.6 45 80.0
Cpa.g.sc1.330 Carica papaya HOM05D001525 ORTHO05D001397 4.6e-11 71.2 69 60.9
Glyma.18G285700 Glycine max HOM05D001525 ORTHO05D001397 4.6e-11 71.2 50 72.0
Phvul.008G015900 Phaseolus vulgaris HOM05D001525 ORTHO05D001397 4.6e-11 71.2 45 80.0
Actinidia02983 Actinidia chinensis HOM05D001525 ORTHO05D001397 6.1e-11 70.9 47 74.5
Glyma.02G095700 Glycine max HOM05D001525 ORTHO05D001397 6.1e-11 70.9 45 77.8
Atru.chr12.565 Acer truncatum HOM05D001525 ORTHO05D001397 7.9e-11 70.5 48 79.2
arahy.Tifrunner.gnm1.ann1.W1RV07 Arachis hypogaea HOM05D001525 ORTHO05D001397 7.9e-11 70.5 53 71.7
arahy.Tifrunner.gnm1.ann1.Y9KA2N Arachis hypogaea HOM05D001525 ORTHO05D001397 7.9e-11 70.5 53 71.7
Medtr7g022840 Medicago truncatula HOM05D001525 ORTHO05D001397 1.0e-10 70.1 50 70.0
Sabra10G0163500 Salix brachista HOM05D001525 ORTHO05D001397 1.0e-10 70.1 40 87.5
vmacro07141 Vaccinium macrocarpon HOM05D001525 ORTHO05D001397 1.0e-10 70.1 44 79.5
Ciclev10033177m.g Citrus clementina HOM05D001525 ORTHO05D001397 2.3e-10 68.9 40 85.0
FAN10G1638 Fragaria x ananassa HOM05D001525 ORTHO05D001397 2.3e-10 68.9 44 77.3
MD01G1120400 Malus domestica HOM05D001525 ORTHO05D001397 2.3e-10 68.9 46 76.1
Rhsim03G0128400 Rhododendron simsii HOM05D001525 ORTHO05D001397 2.3e-10 68.9 44 77.3
TPR.G15516 Trifolium pratense HOM05D001525 ORTHO05D001397 2.3e-10 68.9 50 68.0
Manes.07G110100 Manihot esculenta HOM05D001525 ORTHO05D001397 3.0e-10 68.6 42 83.3
FvH4_7g21050 Fragaria vesca HOM05D001525 ORTHO05D001397 3.9e-10 68.2 44 77.3
FAN01G0344 Fragaria x ananassa HOM05D001525 ORTHO05D001397 3.9e-10 68.2 44 77.3
FAN06G3112 Fragaria x ananassa HOM05D001525 ORTHO05D001397 3.9e-10 68.2 44 77.3
FAN06G3158 Fragaria x ananassa HOM05D001525 ORTHO05D001397 3.9e-10 68.2 44 77.3
MD07G1189600 Malus domestica HOM05D001525 ORTHO05D001397 3.9e-10 68.2 46 73.9
Hund19999 Selenicereus undatus HOM05D001525 ORTHO05D001397 5.1e-10 67.8 49 71.4
Hund22416 Selenicereus undatus HOM05D001525 ORTHO05D001397 5.1e-10 67.8 43 76.7
TWI38G0359 Tripterygium wilfordii HOM05D001525 ORTHO05D001397 5.1e-10 67.8 43 76.7
Eucgr.G02763 Eucalyptus grandis HOM05D001525 ORTHO05D001397 6.7e-10 67.4 42 81.0
Lalb_Chr17g0336301 Lupinus albus HOM05D001525 ORTHO05D001397 8.8e-10 67.0 50 68.0
DCAR_027679 Daucus carota HOM05D001525 ORTHO05D001397 1.1e-09 66.6 41 78.0
FAN03G2704 Fragaria x ananassa HOM05D001525 ORTHO05D001397 1.1e-09 66.6 44 75.0
Manes.10G037300 Manihot esculenta HOM05D001525 ORTHO05D001397 1.1e-09 66.6 44 75.0
Eucgr.G02891 Eucalyptus grandis HOM05D001525 ORTHO05D001397 1.5e-09 66.2 42 78.6
Sc20g0002440 Simmondsia chinensis HOM05D001525 ORTHO05D001397 1.5e-09 66.2 42 73.8
Haze_16992 Corylus avellana HOM05D001525 ORTHO05D001397 2.0e-09 65.9 47 74.5
Haze_16991 Corylus avellana HOM05D001525 ORTHO05D001397 2.5e-09 65.5 46 76.1
Potri.010G211500 Populus trichocarpa HOM05D001525 ORTHO05D001397 3.3e-09 65.1 46 69.6
THA.LOC104806077 Tarenaya hassleriana HOM05D001525 ORTHO05D001397 3.3e-09 65.1 44 72.7
THA.LOC104810007 Tarenaya hassleriana HOM05D001525 ORTHO05D001397 3.3e-09 65.1 44 72.7
TWI15G0169 Tripterygium wilfordii HOM05D001525 ORTHO05D001397 3.3e-09 65.1 39 82.1
EL10Ac2g03461 Beta vulgaris HOM05D001525 ORTHO05D001397 4.3e-09 64.7 44 70.5
Sopen04g005470 Solanum pennellii HOM05D001525 ORTHO05D001397 7.4e-09 63.9 50 66.0
Cfa001542 Carpinus fangiana HOM05D001525 ORTHO05D001397 9.7e-09 63.5 46 76.1
Hma1.2p1_1483F.1_g286290 Hydrangea macrophylla HOM05D001525 ORTHO05D001397 1.7e-08 62.8 44 70.5
QL08p057925 Quercus lobata HOM05D001525 ORTHO05D001397 1.7e-08 62.8 46 73.9
AL5G36360 Arabidopsis lyrata HOM05D001525 ORTHO05D001397 2.2e-08 62.4 44 68.2
AT3G55240 Arabidopsis thaliana HOM05D001525 ORTHO05D001397 2.2e-08 62.4 44 68.2
BcaB01g00120 Brassica carinata HOM05D001525 ORTHO05D001397 2.2e-08 62.4 44 68.2
Thhalv10010856m.g Eutrema salsugineum HOM05D001525 ORTHO05D001397 2.2e-08 62.4 44 68.2
Glyma.20G240100 Glycine max HOM05D001525 ORTHO05D001397 2.2e-08 62.4 42 73.8
Prupe.2G227300 Prunus persica HOM05D001525 ORTHO05D001397 2.2e-08 62.4 50 66.0
BcaC07g39841 Brassica carinata HOM05D001525 ORTHO05D001397 3.7e-08 61.6 44 68.2
A04p04710 Brassica napus HOM05D001525 ORTHO05D001397 3.7e-08 61.6 88 42.0
A09p48170 Brassica napus HOM05D001525 ORTHO05D001397 3.7e-08 61.6 44 68.2
C08p30430 Brassica napus HOM05D001525 ORTHO05D001397 3.7e-08 61.6 44 68.2
BolC8t50666H Brassica oleracea HOM05D001525 ORTHO05D001397 3.7e-08 61.6 44 68.2
BraA04t16183Z Brassica rapa HOM05D001525 ORTHO05D001397 3.7e-08 61.6 88 42.0
BraA09t40273Z Brassica rapa HOM05D001525 ORTHO05D001397 3.7e-08 61.6 44 68.2
CARHR165240 Cardamine hirsuta HOM05D001525 ORTHO05D001397 3.7e-08 61.6 44 65.9
C04p37030 Brassica napus HOM05D001525 ORTHO05D001397 4.8e-08 61.2 44 65.9
Cc02_g08500 Coffea canephora HOM05D001525 ORTHO05D001397 4.8e-08 61.2 41 70.7
PSO478G2903 Papaver somniferum HOM05D001525 ORTHO05D001397 4.8e-08 61.2 85 43.5
Nitab4.5_0000914g0300 Nicotiana tabacum HOM05D001525 ORTHO05D001397 6.3e-08 60.8 42 76.2
BcaB01g00123 Brassica carinata HOM05D001525 ORTHO05D001397 8.2e-08 60.5 44 63.6
CSS0030813 Camellia sinensis var. sinensis HOM05D001525 ORTHO05D001397 8.2e-08 60.5 45 71.1
Carub.0005s2190 Capsella rubella HOM05D001525 ORTHO05D001397 8.2e-08 60.5 44 65.9
PSO782G0983 Papaver somniferum HOM05D001525 ORTHO05D001397 8.2e-08 60.5 78 47.4
Sp5g07220 Schrenkiella parvula HOM05D001525 ORTHO05D001397 8.2e-08 60.5 44 65.9
GSVIVG01005963001 Vitis vinifera HOM05D001525 ORTHO05D001397 8.2e-08 60.5 47 68.1
Aa31LG10G9860 Aethionema arabicum HOM05D001525 ORTHO05D001397 1.1e-07 60.1 44 65.9
BcaB02g08437 Brassica carinata HOM05D001525 ORTHO05D001397 1.1e-07 60.1 44 65.9
Oeu025633.1 Olea europaea HOM05D001525 ORTHO05D001397 1.1e-07 60.1 42 76.2
HanXRQChr09g0247621 Helianthus annuus HOM05D001525 ORTHO05D001397 1.4e-07 59.7 50 68.0
Glyma.10G291000 Glycine max HOM05D001525 ORTHO05D001397 1.8e-07 59.3 48 66.7
HanXRQChr14g0457641 Helianthus annuus HOM05D001525 ORTHO05D001397 1.8e-07 59.3 45 68.9
ECA238G3625 Erigeron canadensis HOM05D001525 ORTHO05D001397 2.4e-07 58.9 45 68.9
Peaxi162Scf00060g00413 Petunia axillaris HOM05D001525 ORTHO05D001397 2.4e-07 58.9 41 75.6
BcaC02g09736 Brassica carinata HOM05D001525 ORTHO05D001397 3.1e-07 58.5 44 63.6
BolC4t25283H Brassica oleracea HOM05D001525 ORTHO05D001397 3.1e-07 58.5 44 63.6
Dinv25957 Davidia involucrata HOM05D001525 ORTHO05D001397 3.1e-07 58.5 46 63.0
CAN.G1557.11 Capsicum annuum HOM05D001525 ORTHO05D001397 4.1e-07 58.2 39 76.9
PSO206G0017 Papaver somniferum HOM05D001525 ORTHO05D001397 4.1e-07 58.2 47 63.8
A05p06960 Brassica napus HOM05D001525 ORTHO05D001397 5.3e-07 57.8 42 66.7
Nitab4.5_0000426g0130 Nicotiana tabacum HOM05D001525 ORTHO05D001397 5.3e-07 57.8 41 73.2
PSO478G3865 Papaver somniferum HOM05D001525 ORTHO05D001397 5.3e-07 57.8 42 66.7
Peaxi162Scf00015g02222 Petunia axillaris HOM05D001525 ORTHO05D001397 6.9e-07 57.4 41 73.2
Thecc.10G058500 Theobroma cacao HOM05D001525 ORTHO05D001397 6.9e-07 57.4 44 68.2
GSVIVG01005964001 Vitis vinifera HOM05D001525 ORTHO05D001397 6.9e-07 57.4 50 60.0
Eucgr.K03172 Eucalyptus grandis HOM05D001525 ORTHO05D001397 9.1e-07 57.0 44 65.9
BcaB02g09121 Brassica carinata HOM05D001525 ORTHO05D001397 1.5e-06 56.2 42 64.3
BraA05t19660Z Brassica rapa HOM05D001525 ORTHO05D001397 1.5e-06 56.2 42 64.3
Lsat_1_v5_gn_9_66461 Lactuca sativa HOM05D001525 ORTHO05D001397 1.5e-06 56.2 45 66.7
Nn2g12872 Nelumbo nucifera HOM05D001525 ORTHO05D001397 1.5e-06 56.2 42 71.4
PSO782G0177 Papaver somniferum HOM05D001525 ORTHO05D001397 1.5e-06 56.2 42 64.3
Lj5g0008672 Lotus japonicus HOM05D001525 ORTHO05D001397 2.0e-06 55.8 44 70.5
Nn2g12887 Nelumbo nucifera HOM05D001525 ORTHO05D001397 2.0e-06 55.8 42 69.0
QL01p026397 Quercus lobata HOM05D001525 ORTHO05D001397 2.0e-06 55.8 44 61.4
Sed0006719 Sechium edule HOM05D001525 ORTHO05D001397 2.0e-06 55.8 47 57.4
TAR369G0906 Trochodendron aralioides HOM05D001525 ORTHO05D001397 2.0e-06 55.8 46 63.0
ECA232G1105 Erigeron canadensis HOM05D001525 ORTHO05D001397 2.6e-06 55.5 44 63.6
ClCG02G013460 Citrullus lanatus HOM05D001525 ORTHO05D001397 3.4e-06 55.1 41 65.9
Nn2g10507 Nelumbo nucifera HOM05D001525 ORTHO05D001397 3.4e-06 55.1 46 65.2
BcaC02g12069 Brassica carinata HOM05D001525 ORTHO05D001397 4.5e-06 54.7 42 61.9
Carub.0002s1242 Capsella rubella HOM05D001525 ORTHO05D001397 4.5e-06 54.7 46 58.7
Nitab4.5_0004055g0070 Nicotiana tabacum HOM05D001525 ORTHO05D001397 7.7e-06 53.9 77 48.1


User provided reference genes

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