Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033643.2 Cucumis melo HOM05D029960 ORTHO05D001695 4.8e-97 357.8 180 100.0
MELO3C032677.2 Cucumis melo HOM05D029960 ORTHO05D001695 1.8e-32 143.3 226 46.9
MELO3C033240.2 Cucumis melo HOM05D029960 ORTHO05D001695 2.0e-31 139.8 198 49.0
MELO3C028894.2 Cucumis melo HOM05D001769 ORTHO05D001695 5.9e-23 111.7 58 94.8
MELO3C028620.2 Cucumis melo HOM05D001769 ORTHO05D001695 2.8e-20 102.8 58 87.9
MELO3C029383.2 Cucumis melo HOM05D001769 ORTHO05D001695 2.3e-14 83.2 52 86.5
MELO3C012247.2 Cucumis melo HOM05D001769 ORTHO05D001695 6.4e-09 65.1 31 93.5
CsaV3_5G034310 Cucumis sativus L. HOM05D001769 ORTHO05D001695 3.2e-08 62.8 31 90.3
Sed0013266 Sechium edule HOM05D001769 ORTHO05D001695 7.0e-08 61.6 28 100.0
Ciclev10032092m.g Citrus clementina HOM05D001769 ORTHO05D001695 9.2e-08 61.2 28 96.4
MELO3C035073.2 Cucumis melo HOM05D029960 ORTHO05D169378 1.2e-07 60.8 33 93.9
Gohir.A03G146600 Gossypium hirsutum HOM05D001769 ORTHO05D001695 2.0e-07 60.1 31 83.9
Gohir.D02G169700 Gossypium hirsutum HOM05D001769 ORTHO05D001695 2.0e-07 60.1 31 83.9
Gorai.005G190200 Gossypium raimondii HOM05D001769 ORTHO05D001695 2.0e-07 60.1 31 83.9
Nn3g17832 Nelumbo nucifera HOM05D001769 ORTHO05D001695 2.7e-07 59.7 28 96.4
THA.LOC104824031 Tarenaya hassleriana HOM05D001769 ORTHO05D001695 2.7e-07 59.7 30 93.3
Atru.chr11.1252 Acer truncatum HOM05D001769 ORTHO05D001695 3.5e-07 59.3 28 92.9
Eucgr.G02323 Eucalyptus grandis HOM05D001769 ORTHO05D001695 3.5e-07 59.3 28 92.9
Gorai.006G067900 Gossypium raimondii HOM05D001769 ORTHO05D001695 4.6e-07 58.9 31 83.9
Hma1.2p1_0061F.1_g033950 Hydrangea macrophylla HOM05D001769 ORTHO05D001695 4.6e-07 58.9 28 89.3
QL01p042778 Quercus lobata HOM05D001769 ORTHO05D001695 4.6e-07 58.9 28 96.4
GSVIVG01011899001 Vitis vinifera HOM05D001769 ORTHO05D001695 4.6e-07 58.9 28 92.9
Sed0020839 Sechium edule HOM05D001769 ORTHO05D001695 6.0e-07 58.5 28 96.4
Cpa.g.sc19.28 Carica papaya HOM05D001769 ORTHO05D001695 7.8e-07 58.2 31 83.9
Potri.010G125200 Populus trichocarpa HOM05D001769 ORTHO05D001695 7.8e-07 58.2 27 96.3
Gohir.D04G081400 Gossypium hirsutum HOM05D001769 ORTHO05D001695 1.0e-06 57.8 31 80.6
Sabra10G0095100 Salix brachista HOM05D001769 ORTHO05D001695 1.0e-06 57.8 27 96.3
Carub.0005s0373 Capsella rubella HOM05D001769 ORTHO05D001695 1.7e-06 57.0 31 87.1
Duzib251G0409 Durio zibethinus HOM05D001769 ORTHO05D001695 1.7e-06 57.0 28 92.9
SalBow8G1926 Salvia bowleyana HOM05D001769 ORTHO05D001695 1.7e-06 57.0 26 100.0
TWI79G0565 Tripterygium wilfordii HOM05D001769 ORTHO05D001695 1.7e-06 57.0 27 96.3
AL5G14550 Arabidopsis lyrata HOM05D001769 ORTHO05D001695 2.3e-06 56.6 31 83.9
AT3G25900 Arabidopsis thaliana HOM05D001769 ORTHO05D001695 2.3e-06 56.6 31 83.9
CSS0049904 Camellia sinensis var. sinensis HOM05D001769 ORTHO05D001695 2.3e-06 56.6 28 92.9
CARHR146880 Cardamine hirsuta HOM05D001769 ORTHO05D001695 2.3e-06 56.6 31 83.9
Cfa018598 Carpinus fangiana HOM05D001769 ORTHO05D001695 2.3e-06 56.6 27 96.3
COL.COLO4_10979 Corchorus olitorius HOM05D001769 ORTHO05D001695 2.3e-06 56.6 28 89.3
Haze_17479 Corylus avellana HOM05D001769 ORTHO05D001695 2.3e-06 56.6 27 96.3
Dinv21088 Davidia involucrata HOM05D001769 ORTHO05D001695 2.3e-06 56.6 28 92.9
Thecc.02G231200 Theobroma cacao HOM05D001769 ORTHO05D001695 2.3e-06 56.6 28 89.3
vmacro01381 Vaccinium macrocarpon HOM05D001769 ORTHO05D001695 2.3e-06 56.6 28 92.9
CSS0010339 Camellia sinensis var. sinensis HOM05D001769 ORTHO05D001695 3.0e-06 56.2 28 92.9
MSTRG.837 Avicennia marina HOM05D001769 ORTHO05D001695 3.9e-06 55.8 26 96.2
THA.LOC104825700 Tarenaya hassleriana HOM05D001769 ORTHO05D001695 3.9e-06 55.8 31 83.9
CiPaw.15G084800 Carya illinoinensis HOM05D001769 ORTHO05D001695 5.0e-06 55.5 27 92.6
MD16G1043200 Malus domestica HOM05D001769 ORTHO05D001695 5.0e-06 55.5 31 83.9
BcaC06g31106 Brassica carinata HOM05D001769 ORTHO05D001695 6.6e-06 55.1 26 96.2
BcaC06g33941 Brassica carinata HOM05D001769 ORTHO05D001695 6.6e-06 55.1 26 96.2
A06p42390 Brassica napus HOM05D001769 ORTHO05D001695 6.6e-06 55.1 26 96.2
C07p34940 Brassica napus HOM05D001769 ORTHO05D001695 6.6e-06 55.1 26 96.2
BolC7t44026H Brassica oleracea HOM05D001769 ORTHO05D001695 6.6e-06 55.1 26 96.2
BraA06t27154Z Brassica rapa HOM05D001769 ORTHO05D001695 6.6e-06 55.1 26 96.2
Thhalv10004584m.g Eutrema salsugineum HOM05D001769 ORTHO05D001695 6.6e-06 55.1 26 96.2
Medtr5g056640 Medicago truncatula HOM05D001769 ORTHO05D001695 6.6e-06 55.1 28 89.3
Prupe.1G310700 Prunus persica HOM05D001769 ORTHO05D001695 6.6e-06 55.1 31 83.9
Sp2g15140 Schrenkiella parvula HOM05D001769 ORTHO05D001695 6.6e-06 55.1 26 96.2
TPR.G27961 Trifolium pratense HOM05D001769 ORTHO05D001695 6.6e-06 55.1 28 89.3
Lj3C1015T9 Lonicera japonica HOM05D001769 ORTHO05D001695 8.6e-06 54.7 28 89.3
Oeu039278.1 Olea europaea HOM05D001769 ORTHO05D001695 8.6e-06 54.7 26 92.3


User provided reference genes

Program Settings