Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033540.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.0e-136 488.0 237 100.0
MELO3C033304.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.7e-47 193.0 145 71.0
MELO3C031851.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.9e-43 177.9 102 85.3
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.6e-34 149.8 142 62.0
MELO3C034519.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.9e-33 145.6 160 57.5
MELO3C034551.2 Cucumis melo HOM05D007110 ORTHO05D000233 7.1e-32 141.7 121 64.5
MELO3C029201.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.6e-30 134.8 126 59.5
MELO3C029129.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.9e-27 124.8 68 89.7
CsaV3_3G028110 Cucumis sativus L. HOM05D007110 ORTHO05D000592 4.9e-25 119.0 125 53.6
MELO3C029556.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.9e-24 117.1 83 72.3
MELO3C029607.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.6e-23 114.0 116 58.6
MELO3C034970.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.0e-22 111.3 143 48.3
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.3e-22 110.9 101 62.4
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.9e-22 109.4 144 45.8
MELO3C030915.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.1e-21 107.8 53 92.5
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 1.9e-21 107.1 147 45.6
MELO3C035035.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.3e-21 105.9 144 50.0
MELO3C027818.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.7e-20 102.4 143 49.7
MELO3C030224.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.1e-19 101.3 115 55.7
MELO3C028426.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.0e-18 97.1 94 61.7
MELO3C035372.2 Cucumis melo HOM05D007110 ORTHO05D000592 7.6e-18 95.1 125 46.4
MELO3C028541.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.4e-16 89.0 125 49.6
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.5e-13 80.1 136 36.0
MELO3C035597.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.3e-13 79.3 59 69.5
MELO3C034440.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.6e-12 76.3 136 44.1
MELO3C028199.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.8e-12 75.9 34 100.0
MELO3C027996.2 Cucumis melo HOM05D007110 ORTHO05D000592 8.1e-12 75.1 135 43.7
Ciclev10012877m.g Citrus clementina HOM05D000539 ORTHO05D000592 1.1e-11 74.7 147 32.0
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 1.4e-11 74.3 163 29.4
MELO3C027432.2 Cucumis melo HOM05D007110 ORTHO05D000592 6.9e-11 72.0 123 43.1
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.5e-10 70.9 168 32.1
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 1.5e-10 70.9 145 26.2
MELO3C029067.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.4e-10 69.7 151 30.5
MELO3C029153.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.4e-10 69.7 135 42.2
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.4e-10 69.3 168 31.5
MELO3C029127.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.8e-10 68.9 34 88.2
MELO3C027967.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-09 67.8 140 29.3
Sed0014463 Sechium edule HOM05D000539 ORTHO05D000592 1.3e-09 67.8 135 30.4
Atru.chr1.738 Acer truncatum HOM05D000539 ORTHO05D000592 2.2e-09 67.0 182 27.5
Prupe.1G173700 Prunus persica HOM05D000539 ORTHO05D000592 3.8e-09 66.2 146 32.2
Atru.chr6.155 Acer truncatum HOM05D000539 ORTHO05D000592 4.9e-09 65.9 142 32.4
MELO3C032093.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.9e-09 65.9 151 30.5
RcHm_v2.0_Chr3g0495121 Rosa chinensis HOM05D000539 ORTHO05D000592 6.4e-09 65.5 148 31.8
Prupe.2G062000 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-08 64.7 150 30.7
Sed0016258 Sechium edule HOM05D000539 ORTHO05D000233 1.1e-08 64.7 140 29.3
MELO3C027777.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.9e-08 63.9 86 47.7
Prupe.3G107500 Prunus persica HOM05D000539 ORTHO05D000233 1.9e-08 63.9 145 33.1
Prupe.1G036300 Prunus persica HOM05D000539 ORTHO05D000592 2.4e-08 63.5 150 31.3
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 2.4e-08 63.5 150 31.3
Prupe.1G185000 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-08 63.2 150 31.3
Prupe.1G199400 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-08 63.2 150 31.3
Prupe.2G089500 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-08 63.2 150 31.3
Prupe.2G157500 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-08 63.2 150 31.3
Prupe.3G119600 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-08 63.2 150 31.3
Prupe.6G142900 Prunus persica HOM05D000539 ORTHO05D000592 3.2e-08 63.2 150 31.3
Prupe.5G051700 Prunus persica HOM05D000539 ORTHO05D000592 4.2e-08 62.8 150 31.3
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.2e-08 62.8 142 31.7
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.2e-08 62.8 142 31.7
Prupe.1G193900 Prunus persica HOM05D000539 ORTHO05D000592 5.4e-08 62.4 145 33.1
Prupe.1G397800 Prunus persica HOM05D000539 ORTHO05D000592 5.4e-08 62.4 150 31.3
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 5.4e-08 62.4 150 31.3
Prupe.5G060800 Prunus persica HOM05D000539 ORTHO05D000592 5.4e-08 62.4 157 29.9
Prupe.6G180100 Prunus persica HOM05D000539 ORTHO05D000592 5.4e-08 62.4 150 31.3
Prupe.1G174000 Prunus persica HOM05D000539 ORTHO05D000592 7.1e-08 62.0 145 32.4
Prupe.7G057400 Prunus persica HOM05D000539 ORTHO05D000592 7.1e-08 62.0 150 30.0
RcHm_v2.0_Chr3g0495531 Rosa chinensis HOM05D000539 ORTHO05D000592 7.1e-08 62.0 148 31.1
MELO3C031391.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.3e-08 61.6 113 32.7
Prupe.3G118800 Prunus persica HOM05D000539 ORTHO05D000592 9.3e-08 61.6 150 30.7
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 9.3e-08 61.6 150 30.7
Prupe.8G059600 Prunus persica HOM05D000539 ORTHO05D000592 9.3e-08 61.6 145 32.4
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 9.3e-08 61.6 157 31.8
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 9.3e-08 61.6 148 31.8
MELO3C032017.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-07 61.2 126 30.2
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 1.2e-07 61.2 157 32.5
Lsat_1_v5_gn_2_7701 Lactuca sativa HOM05D000539 ORTHO05D000592 1.2e-07 61.2 142 31.7
Prupe.1G310400 Prunus persica HOM05D000539 ORTHO05D000592 1.2e-07 61.2 150 30.7
Ciclev10005682m.g Citrus clementina HOM05D000539 ORTHO05D000592 1.6e-07 60.8 140 30.0
MELO3C029690.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-07 60.5 125 31.2
MELO3C030161.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-07 60.5 131 25.2
Prupe.7G033400 Prunus persica HOM05D000539 ORTHO05D000592 2.1e-07 60.5 145 31.7
MELO3C027653.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.7e-07 60.1 125 30.4
Prupe.4G253500 Prunus persica HOM05D000539 ORTHO05D000592 2.7e-07 60.1 150 30.0
Prupe.5G062900 Prunus persica HOM05D000539 ORTHO05D000592 2.7e-07 60.1 145 32.4
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 2.7e-07 60.1 148 28.4
SHI03580 Sapria himalayana HOM05D000616 ORTHO05D000233 3.5e-07 59.7 125 31.2
MELO3C034786.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.6e-07 59.3 140 25.7
FAN07G0440 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-07 59.3 134 30.6
RhsimUnG0164900 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.6e-07 59.3 153 28.8
MELO3C030592.2 Cucumis melo HOM05D000539 ORTHO05D000233 6.0e-07 58.9 126 28.6
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 6.0e-07 58.9 139 25.9
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 7.9e-07 58.5 139 25.2
MELO3C029479.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.9e-07 58.5 123 30.1
RcHm_v2.0_Chr4g0414241 Rosa chinensis HOM05D000539 ORTHO05D000592 7.9e-07 58.5 148 29.7
RcHm_v2.0_Chr7g0209041 Rosa chinensis HOM05D000539 ORTHO05D000592 7.9e-07 58.5 148 27.0
MELO3C028520.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.0e-06 58.2 124 28.2
Prupe.1G183700 Prunus persica HOM05D000539 ORTHO05D000592 1.0e-06 58.2 145 32.4
Prupe.4G092400 Prunus persica HOM05D000539 ORTHO05D000592 1.0e-06 58.2 145 31.0
Sed0025490 Sechium edule HOM05D000539 ORTHO05D000592 1.0e-06 58.2 115 31.3
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-06 57.8 129 32.6
Prupe.2G045600 Prunus persica HOM05D000539 ORTHO05D000592 1.3e-06 57.8 150 30.7
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.3e-06 57.8 135 31.9
ECA246G5051 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.7e-06 57.4 144 28.5
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 2.3e-06 57.0 142 29.6
RcHm_v2.0_Chr4g0424911 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-06 57.0 149 26.8
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-06 56.6 141 24.1
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-06 56.6 175 23.4
Prupe.5G040600 Prunus persica HOM05D000539 ORTHO05D000592 3.0e-06 56.6 145 31.7
RcHm_v2.0_Chr4g0407981 Rosa chinensis HOM05D000539 ORTHO05D000592 3.0e-06 56.6 149 30.2
CANSAT80G0221 Cannabis sativa HOM05D000539 ORTHO05D000233 3.9e-06 56.2 144 28.5
FAN07G2619 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.9e-06 56.2 126 27.8
FAN19G2795 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.9e-06 56.2 141 27.0
Prupe.1G201000 Prunus persica HOM05D000539 ORTHO05D000592 3.9e-06 56.2 145 31.7
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 3.9e-06 56.2 132 31.1
Prupe.4G261200 Prunus persica HOM05D000539 ORTHO05D000592 5.1e-06 55.8 144 30.6
Ciclev10033503m.g Citrus clementina HOM05D000539 ORTHO05D000592 6.6e-06 55.5 68 36.8
FAN11G2362 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.6e-06 55.5 126 27.8
RcHm_v2.0_Chr6g0271071 Rosa chinensis HOM05D000539 ORTHO05D000592 6.6e-06 55.5 149 30.2
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.7e-06 55.1 136 32.4
FAN06G0003 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.7e-06 55.1 155 24.5
FAN18G4025 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.7e-06 55.1 130 27.7
FAN20G0711 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.7e-06 55.1 132 26.5
RcHm_v2.0_Chr5g0072991 Rosa chinensis HOM05D000539 ORTHO05D000592 8.7e-06 55.1 145 26.9
SHI15885 Sapria himalayana HOM05D000616 ORTHO05D000233 8.7e-06 55.1 63 42.9


User provided reference genes

Program Settings