Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033362.2 Cucumis melo HOM05D000499 ORTHO05D026355 7.3e-74 280.4 137 100.0
MELO3C004012.2 Cucumis melo HOM05D000499 ORTHO05D006811 8.7e-59 230.3 200 63.5
CsaV3_2G008480 Cucumis sativus L. HOM05D000499 ORTHO05D006811 1.5e-58 229.6 200 63.0
Sed0007543 Sechium edule HOM05D000499 ORTHO05D006811 2.1e-52 209.1 202 55.9
Sed0020317 Sechium edule HOM05D000499 ORTHO05D006811 1.0e-51 206.8 201 56.7
QL11p004981 Quercus lobata HOM05D000499 ORTHO05D006811 1.2e-44 183.3 200 49.5
CSS0032653 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D006811 1.0e-43 180.3 201 47.3
Cpa.g.sc20.111 Carica papaya HOM05D000499 ORTHO05D006811 3.0e-43 178.7 200 46.5
Lj9A400T58 Lonicera japonica HOM05D000499 ORTHO05D006811 3.0e-43 178.7 157 55.4
MD05G1124800 Malus domestica HOM05D000499 ORTHO05D006811 5.1e-43 177.9 203 49.8
TAR376G0435 Trochodendron aralioides HOM05D000499 ORTHO05D006811 5.1e-43 177.9 201 49.3
Actinidia21475 Actinidia chinensis HOM05D000499 ORTHO05D006811 6.7e-43 177.6 201 47.3
TAR628G0399 Trochodendron aralioides HOM05D000499 ORTHO05D006811 6.7e-43 177.6 200 48.5
MD10G1127500 Malus domestica HOM05D000499 ORTHO05D006811 1.5e-42 176.4 203 49.3
Prupe.8G168700 Prunus persica HOM05D000499 ORTHO05D006811 1.5e-42 176.4 203 49.8
Nn8g39873 Nelumbo nucifera HOM05D000499 ORTHO05D006811 2.0e-42 176.0 198 48.5
GSVIVG01023975001 Vitis vinifera HOM05D000499 ORTHO05D006811 2.5e-42 175.6 198 47.5
Ciclev10028256m.g Citrus clementina HOM05D000499 ORTHO05D006811 3.3e-42 175.3 201 47.8
CSS0014473 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D006811 4.3e-42 174.9 200 46.0
TWI31G0150 Tripterygium wilfordii HOM05D000499 ORTHO05D006811 5.7e-42 174.5 201 46.8
Ca_17944_v3 Cicer arietinum L. HOM05D000499 ORTHO05D006811 2.2e-41 172.6 200 46.5
Lj4g0024907 Lotus japonicus HOM05D000499 ORTHO05D006811 4.8e-41 171.4 200 46.0
CSS0037487 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D006811 6.3e-41 171.0 199 45.7
Potri.009G138000 Populus trichocarpa HOM05D000499 ORTHO05D006811 1.1e-40 170.2 201 48.3
Dinv05899 Davidia involucrata HOM05D000499 ORTHO05D006811 1.4e-40 169.9 200 46.5
Nn3g21923 Nelumbo nucifera HOM05D000499 ORTHO05D006811 4.1e-40 168.3 199 46.2
Sabra04G0050700 Salix brachista HOM05D003113 ORTHO05D006811 6.9e-40 167.5 201 47.3
Ah.01g023210 Amaranthus hybridus HOM05D000499 ORTHO05D006811 9.1e-40 167.2 202 43.6
Glyma.08G114500 Glycine max HOM05D000499 ORTHO05D006811 9.1e-40 167.2 200 45.0
Cfa005284 Carpinus fangiana HOM05D000499 ORTHO05D006811 2.6e-39 165.6 203 45.8
PSO675G9157 Papaver somniferum HOM05D000499 ORTHO05D006811 3.4e-39 165.2 201 45.8
Thecc.02G055900 Theobroma cacao HOM05D000499 ORTHO05D006811 4.5e-39 164.9 201 46.3
MBI05_g11988_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D006811 5.9e-39 164.5 200 44.5
AUR62013004 Chenopodium quinoa HOM05D000499 ORTHO05D006811 7.7e-39 164.1 201 43.8
Rhsim05G0053100 Rhododendron simsii HOM05D000499 ORTHO05D006811 1.3e-38 163.3 201 43.3
vmacro17322 Vaccinium macrocarpon HOM05D000499 ORTHO05D006811 1.3e-38 163.3 200 44.5
CANSAT80G1259 Cannabis sativa HOM05D000499 ORTHO05D006811 2.2e-38 162.5 203 45.8
Hma1.2p1_0163F.1_g072690 Hydrangea macrophylla HOM05D000499 ORTHO05D006811 2.2e-38 162.5 200 44.0
THA.LOC104824754 Tarenaya hassleriana HOM05D000499 ORTHO05D006811 2.2e-38 162.5 195 45.1
COL.COLO4_17373 Corchorus olitorius HOM05D000499 ORTHO05D006811 3.8e-38 161.8 197 46.2
Potri.004G177600 Populus trichocarpa HOM05D000499 ORTHO05D006811 3.8e-38 161.8 193 46.1
PSO541G6253 Papaver somniferum HOM05D000499 ORTHO05D006811 6.5e-38 161.0 201 44.8
Medtr8g085850 Medicago truncatula HOM05D000499 ORTHO05D006811 8.5e-38 160.6 202 43.6
AUR62010014 Chenopodium quinoa HOM05D000499 ORTHO05D006811 1.1e-37 160.2 201 42.3
Gohir.A12G036300 Gossypium hirsutum HOM05D000499 ORTHO05D006811 1.4e-37 159.8 201 44.3
MBI14_g42955_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D006811 1.4e-37 159.8 200 44.5
CSS0001067 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D006811 1.9e-37 159.5 189 46.0
CSS0009673 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D006811 1.9e-37 159.5 189 46.0
CSS0010549 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D006811 1.9e-37 159.5 189 46.0
AUR62015151 Chenopodium quinoa HOM05D000499 ORTHO05D006811 1.9e-37 159.5 198 42.9
Lalb_Chr13g0295051 Lupinus albus HOM05D000499 ORTHO05D006811 2.5e-37 159.1 189 45.5
Duzib132G1219 Durio zibethinus HOM05D000499 ORTHO05D006811 3.2e-37 158.7 201 44.3
Sp7g37270 Schrenkiella parvula HOM05D000499 ORTHO05D006811 3.2e-37 158.7 198 43.4
Atru.chr5.3428 Acer truncatum HOM05D000499 ORTHO05D006811 4.2e-37 158.3 205 43.4
EL10Ac9g21343 Beta vulgaris HOM05D000499 ORTHO05D006811 5.5e-37 157.9 198 40.9
Gohir.D12G036300 Gossypium hirsutum HOM05D000499 ORTHO05D006811 5.5e-37 157.9 201 43.8
Oeu028965.1 Olea europaea HOM05D000499 ORTHO05D006811 5.5e-37 157.9 200 42.5
ECA234G2421 Erigeron canadensis HOM05D000499 ORTHO05D006811 7.2e-37 157.5 195 43.1
Nitab4.5_0004864g0030 Nicotiana tabacum HOM05D000499 ORTHO05D006811 9.4e-37 157.1 199 43.2
arahy.Tifrunner.gnm1.ann1.PT1D4B Arachis hypogaea HOM05D000499 ORTHO05D006811 1.2e-36 156.8 201 43.3
Peaxi162Scf00362g00542 Petunia axillaris HOM05D000499 ORTHO05D006811 1.2e-36 156.8 199 43.2
HanXRQChr10g0297961 Helianthus annuus HOM05D000499 ORTHO05D006811 1.6e-36 156.4 190 44.2
Carub.0007s0039 Capsella rubella HOM05D000499 ORTHO05D006811 2.1e-36 156.0 200 42.5
Gorai.008G037500 Gossypium raimondii HOM05D000499 ORTHO05D006811 2.1e-36 156.0 201 43.3
Oeu032535.1 Olea europaea HOM05D000499 ORTHO05D006811 2.1e-36 156.0 193 44.0
SGA_v2.0_scaffold183G39845 Striga asiatica HOM05D000499 ORTHO05D006811 2.1e-36 156.0 201 41.8
arahy.Tifrunner.gnm1.ann1.3RE0GA Arachis hypogaea HOM05D000499 ORTHO05D006811 3.6e-36 155.2 201 42.8
PGR042G1957 Punica granatum HOM05D000499 ORTHO05D006811 3.6e-36 155.2 200 45.5
VMungo0251G2967 Vigna mungo HOM05D000499 ORTHO05D006811 3.6e-36 155.2 199 42.2
AL7G10370 Arabidopsis lyrata HOM05D000499 ORTHO05D006811 4.7e-36 154.8 198 43.4
Thhalv10024983m.g Eutrema salsugineum HOM05D000499 ORTHO05D006811 4.7e-36 154.8 198 42.9
AT4G38500 Arabidopsis thaliana HOM05D000499 ORTHO05D006811 6.1e-36 154.5 198 42.9
CAN.G588.98 Capsicum annuum HOM05D000499 ORTHO05D006811 6.1e-36 154.5 201 42.8
Nitab4.5_0003698g0040 Nicotiana tabacum HOM05D000499 ORTHO05D006811 6.1e-36 154.5 199 42.7
MSTRG.26308 Avicennia marina HOM05D000499 ORTHO05D006811 7.9e-36 154.1 200 41.5
MD00G1148400 Malus domestica HOM05D000499 ORTHO05D006811 7.9e-36 154.1 177 50.3
Phvul.002G236800 Phaseolus vulgaris HOM05D000499 ORTHO05D006811 1.0e-35 153.7 199 42.2
Manes.04G071100 Manihot esculenta HOM05D000499 ORTHO05D006811 3.9e-35 151.8 177 48.6
Aqoxy7G01776 Aquilegia oxysepala HOM05D000499 ORTHO05D006811 6.7e-35 151.0 186 46.8
Sc08g0002760 Simmondsia chinensis HOM05D000499 ORTHO05D006811 6.7e-35 151.0 198 42.9
Lsat_1_v5_gn_4_71961 Lactuca sativa HOM05D000499 ORTHO05D006811 8.8e-35 150.6 201 40.8
Aqoxy7G02316 Aquilegia oxysepala HOM05D000499 ORTHO05D006811 1.1e-34 150.2 202 44.1
BraA06t27769Z Brassica rapa HOM05D000499 ORTHO05D006811 3.3e-34 148.7 199 42.2
Cc09_g10300 Coffea canephora HOM05D000499 ORTHO05D006811 3.3e-34 148.7 185 44.9
Rhsim05G0053000 Rhododendron simsii HOM05D000499 ORTHO05D006811 4.4e-34 148.3 200 40.5
TWI79G1511 Tripterygium wilfordii HOM05D000499 ORTHO05D006811 5.7e-34 147.9 246 37.8
DCAR_021739 Daucus carota HOM05D000499 ORTHO05D006811 7.4e-34 147.5 197 41.6
Migut.K00360 Erythranthe guttata HOM05D000499 ORTHO05D006811 1.3e-33 146.7 200 39.5
Hma1.2p1_0032F.1_g019250 Hydrangea macrophylla HOM05D000499 ORTHO05D006811 3.7e-33 145.2 195 40.5
RcHm_v2.0_Chr6g0278831 Rosa chinensis HOM05D000499 ORTHO05D006811 3.7e-33 145.2 203 42.9
Aa31LG6G16680 Aethionema arabicum HOM05D000499 ORTHO05D006811 1.1e-32 143.7 222 39.6
C07p63730 Brassica napus HOM05D000499 ORTHO05D006811 1.1e-32 143.7 197 41.6
BolC7t46785H Brassica oleracea HOM05D000499 ORTHO05D006811 1.1e-32 143.7 197 41.6
Solyc01g111770.2 Solanum lycopersicum HOM05D000499 ORTHO05D006811 1.1e-32 143.7 185 42.7
Sopen01g053810 Solanum pennellii HOM05D000499 ORTHO05D006811 1.1e-32 143.7 185 42.7
FvH4_2g15630 Fragaria vesca HOM05D000499 ORTHO05D006811 2.4e-32 142.5 201 42.3
Glyma.05G156400 Glycine max HOM05D000499 ORTHO05D006811 2.4e-32 142.5 182 43.4
HPP92_007320 Vanilla planifolia HOM05D000499 ORTHO05D006811 3.1e-32 142.1 193 41.5
FAN27G3524 Fragaria x ananassa HOM05D000499 ORTHO05D006811 5.3e-32 141.4 201 41.8
PGSC0003DMG400003417 Solanum tuberosum HOM05D000499 ORTHO05D006811 5.3e-32 141.4 185 42.2
FAN15G3063 Fragaria x ananassa HOM05D000499 ORTHO05D006811 9.1e-32 140.6 201 41.8
Sabra04G0119500 Salix brachista HOM05D000499 ORTHO05D006811 1.5e-31 139.8 230 39.1
FAN20G2492 Fragaria x ananassa HOM05D000499 ORTHO05D006811 2.0e-31 139.4 201 41.3
CARHR294220 Cardamine hirsuta HOM05D000499 ORTHO05D006811 2.6e-31 139.0 198 40.4
CiPaw.05G085000 Carya illinoinensis HOM05D000499 ORTHO05D006811 3.8e-30 135.2 159 47.8
FAN24G1445 Fragaria x ananassa HOM05D000499 ORTHO05D006811 3.6e-28 128.6 175 43.4
ATR0706G151 Amborella trichopoda HOM05D000499 ORTHO05D006811 6.7e-27 124.4 198 35.4
Haze_02108 Corylus avellana HOM05D000499 ORTHO05D006811 8.8e-27 124.0 326 29.1
unitig_62.g23481 Utricularia gibba HOM05D000499 ORTHO05D006811 3.3e-26 122.1 206 34.0
Os06g0724300 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D006811 1.1e-24 117.1 179 36.3
Actinidia32491 Actinidia chinensis HOM05D000499 ORTHO05D026355 2.4e-24 115.9 87 58.6
Zm00001eb272180 Zea mays HOM05D000499 ORTHO05D006811 1.6e-23 113.2 194 34.5
Zm00001eb228280 Zea mays HOM05D000499 ORTHO05D006811 6.5e-22 107.8 179 34.6
Hund06450 Selenicereus undatus HOM05D000499 ORTHO05D006811 4.7e-20 101.7 200 32.0
TAR633G2771 Trochodendron aralioides HOM05D000499 ORTHO05D006811 3.4e-18 95.5 49 85.7
Dinv14125 Davidia involucrata HOM05D000499 ORTHO05D006811 1.3e-17 93.6 50 80.0
CDE02G0675 Ceratophyllum demersum HOM05D000499 ORTHO05D006811 1.7e-17 93.2 58 70.7
vmacro02290 Vaccinium macrocarpon HOM05D000499 ORTHO05D006811 2.8e-17 92.4 59 67.8
Actinidia08413 Actinidia chinensis HOM05D000499 ORTHO05D006811 3.7e-17 92.0 59 67.8
Psat7g072040 Pisum sativum HOM05D000499 ORTHO05D006811 3.7e-17 92.0 59 64.4
Duzib052G0089 Durio zibethinus HOM05D000499 ORTHO05D006811 4.8e-17 91.7 59 66.1
arahy.Tifrunner.gnm1.ann1.27IQR1 Arachis hypogaea HOM05D000499 ORTHO05D006811 6.3e-17 91.3 59 66.1
ATR0751G234 Amborella trichopoda HOM05D000499 ORTHO05D006811 1.1e-16 90.5 59 66.1
TPR.G38879 Trifolium pratense HOM05D000499 ORTHO05D006811 4.1e-16 88.6 60 61.7
Gorai.002G200000 Gossypium raimondii HOM05D000499 ORTHO05D006811 7.0e-16 87.8 50 78.0
SMO172G0185 Selaginella moellendorffii HOM05D000499 ORTHO05D006811 2.5e-13 79.3 55 60.0
CDE04G2117 Ceratophyllum demersum HOM05D000499 ORTHO05D006811 6.8e-11 71.2 88 44.3
Actinidia08414 Actinidia chinensis HOM05D000499 ORTHO05D026355 3.4e-10 68.9 49 63.3
Cc02_g37480 Coffea canephora HOM05D000499 ORTHO05D006811 1.3e-09 67.0 64 43.8
Gohir.D01G161350 Gossypium hirsutum HOM05D000499 ORTHO05D006811 1.8e-08 63.2 33 84.8
Pp3c8_21750 Physcomitrium patens HOM05D000499 ORTHO05D006811 2.4e-08 62.8 56 48.2
SEGI_16265 Sequoiadendron giganteum HOM05D000499 ORTHO05D006811 1.2e-07 60.5 33 78.8


User provided reference genes

Program Settings