Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 2.5e-50 201.8 103 100.0
CsaV3_6G018620 Cucumis sativus L. HOM05D000416 ORTHO05D000322 1.3e-14 83.2 69 69.6
MELO3C021406.2 Cucumis melo HOM05D000416 ORTHO05D000322 2.9e-14 82.0 69 69.6
MELO3C035393.2 Cucumis melo HOM05D008781 ORTHO05D013374 2.3e-11 72.4 51 76.5
ClCG06G005840 Citrullus lanatus HOM05D000416 ORTHO05D000322 5.1e-11 71.2 69 65.2
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 6.6e-11 70.9 55 70.9
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.1e-10 70.1 55 69.1
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.9e-10 69.3 55 69.1
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.6e-09 66.2 109 43.1
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 4.8e-09 64.7 55 63.6
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.8e-09 64.7 55 63.6
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 4.8e-09 64.7 55 63.6
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 6.2e-09 64.3 113 44.2
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 8.1e-09 63.9 55 65.5
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.1e-08 63.5 63 57.1
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.1e-08 63.5 63 57.1
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 1.1e-08 63.5 55 61.8
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 1.1e-08 63.5 63 57.1
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.4e-08 63.2 109 42.2
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.4e-08 63.2 109 42.2
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.8e-08 62.8 55 60.0
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 2.4e-08 62.4 63 58.7
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 3.1e-08 62.0 63 55.6
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 3.1e-08 62.0 63 54.0
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.3e-08 61.2 55 58.2
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 6.9e-08 60.8 65 52.3
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 6.9e-08 60.8 65 52.3
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 9.0e-08 60.5 42 69.0
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.2e-07 60.1 113 40.7
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.2e-07 60.1 55 56.4
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.2e-07 60.1 46 69.6
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.5e-07 59.7 63 52.4
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.5e-07 59.7 68 50.0
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 2.0e-07 59.3 114 39.5
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.0e-07 59.3 63 54.0
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.6e-07 58.9 55 56.4
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.6e-07 58.9 63 52.4
Sed0016794 Sechium edule HOM05D000416 ORTHO05D000322 2.6e-07 58.9 65 55.4
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 3.4e-07 58.5 63 55.6
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 3.4e-07 58.5 112 42.0
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.4e-07 58.5 112 42.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 3.4e-07 58.5 55 56.4
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 4.5e-07 58.2 60 53.3
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 4.5e-07 58.2 51 62.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 5.8e-07 57.8 63 52.4
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 5.8e-07 57.8 65 50.8
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 5.8e-07 57.8 63 52.4
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 5.8e-07 57.8 63 50.8
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 5.8e-07 57.8 56 53.6
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 5.8e-07 57.8 114 39.5
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 5.8e-07 57.8 49 55.1
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 7.6e-07 57.4 63 54.0
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 7.6e-07 57.4 46 65.2
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 7.6e-07 57.4 63 52.4
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.6e-07 57.4 113 38.1
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 7.6e-07 57.4 63 52.4
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 7.6e-07 57.4 63 49.2
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 7.6e-07 57.4 63 50.8
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 9.9e-07 57.0 63 54.0
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.3e-06 56.6 55 56.4
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.3e-06 56.6 55 56.4
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.3e-06 56.6 65 49.2
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-06 56.6 113 38.1
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.3e-06 56.6 113 38.1
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.3e-06 56.6 63 54.0
Sed0003352 Sechium edule HOM05D000416 ORTHO05D000322 1.3e-06 56.6 68 48.5
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.3e-06 56.6 63 54.0
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.3e-06 56.6 63 54.0
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.3e-06 56.6 63 54.0
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.3e-06 56.6 55 52.7
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.7e-06 56.2 63 50.8
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.7e-06 56.2 55 54.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.7e-06 56.2 55 56.4
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 2.2e-06 55.8 65 49.2
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 2.2e-06 55.8 65 49.2
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.2e-06 55.8 65 49.2
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.2e-06 55.8 110 39.1
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.9e-06 55.5 110 39.1
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.9e-06 55.5 63 52.4
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 4.9e-06 54.7 61 49.2
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 4.9e-06 54.7 61 50.8
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 4.9e-06 54.7 63 50.8
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 4.9e-06 54.7 109 35.8
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 4.9e-06 54.7 65 47.7
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 4.9e-06 54.7 46 60.9
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 6.4e-06 54.3 65 49.2
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 6.4e-06 54.3 110 39.1
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 6.4e-06 54.3 55 54.5
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 8.4e-06 53.9 61 47.5
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 8.4e-06 53.9 46 60.9
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.4e-06 53.9 46 60.9
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.4e-06 53.9 46 60.9
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 8.4e-06 53.9 46 63.0
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 8.4e-06 53.9 46 60.9


User provided reference genes

Program Settings