Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 2.1e-32 141.7 72 100.0
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.5e-17 91.7 59 79.7
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 6.9e-15 83.6 49 87.8
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.9e-15 83.6 49 87.8
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 6.9e-15 83.6 49 87.8
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 2.9e-13 78.2 49 81.6
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 8.5e-13 76.6 49 77.6
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 2.5e-12 75.1 49 75.5
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 3.2e-12 74.7 49 73.5
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 5.5e-12 73.9 49 71.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 5.5e-12 73.9 49 73.5
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 7.2e-12 73.6 49 73.5
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 7.2e-12 73.6 49 73.5
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 9.4e-12 73.2 49 73.5
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.2e-11 72.8 49 73.5
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.6e-11 72.4 49 73.5
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.6e-11 72.4 49 73.5
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 2.7e-11 71.6 49 71.4
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 2.7e-11 71.6 48 75.0
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 2.7e-11 71.6 48 75.0
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.7e-11 71.6 49 67.3
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 2.7e-11 71.6 49 67.3
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 4.6e-11 70.9 49 69.4
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 4.6e-11 70.9 49 69.4
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.6e-11 70.9 49 71.4
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 4.6e-11 70.9 50 68.0
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 4.6e-11 70.9 49 69.4
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 6.1e-11 70.5 49 69.4
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 6.1e-11 70.5 49 69.4
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 6.1e-11 70.5 49 69.4
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 6.1e-11 70.5 49 69.4
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 7.9e-11 70.1 49 67.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 7.9e-11 70.1 49 69.4
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 7.9e-11 70.1 49 69.4
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 7.9e-11 70.1 49 69.4
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.0e-10 69.7 49 67.3
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 1.0e-10 69.7 49 69.4
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.0e-10 69.7 49 71.4
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.4e-10 69.3 48 72.9
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.4e-10 69.3 48 72.9
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.4e-10 69.3 49 69.4
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.4e-10 69.3 49 69.4
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.4e-10 69.3 49 67.3
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.8e-10 68.9 49 67.3
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.8e-10 68.9 49 69.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.8e-10 68.9 49 65.3
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.3e-10 68.6 48 70.8
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.3e-10 68.6 48 70.8
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 2.3e-10 68.6 49 67.3
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 2.3e-10 68.6 49 67.3
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 2.3e-10 68.6 49 67.3
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.3e-10 68.6 49 67.3
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 3.0e-10 68.2 49 63.3
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 3.0e-10 68.2 49 63.3
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 3.9e-10 67.8 49 63.3
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 3.9e-10 67.8 48 68.8
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 3.9e-10 67.8 49 63.3
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.9e-10 67.8 49 67.3
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 5.1e-10 67.4 48 68.8
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 5.1e-10 67.4 48 68.8
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 5.1e-10 67.4 48 68.8
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 5.1e-10 67.4 48 68.8
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 5.1e-10 67.4 49 61.2
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 5.1e-10 67.4 49 65.3
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 6.7e-10 67.0 49 65.3
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 6.7e-10 67.0 49 65.3
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 6.7e-10 67.0 48 68.8
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 8.8e-10 66.6 38 89.5
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 8.8e-10 66.6 48 66.7
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.1e-09 66.2 49 63.3
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.1e-09 66.2 49 63.3
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.1e-09 66.2 48 68.8
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.1e-09 66.2 48 68.8
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.1e-09 66.2 49 67.3
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.1e-09 66.2 49 61.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.5e-09 65.9 49 63.3
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.5e-09 65.9 49 63.3
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.5e-09 65.9 49 63.3
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.5e-09 65.9 49 61.2
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.0e-09 65.5 49 63.3
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 2.0e-09 65.5 48 66.7
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 2.0e-09 65.5 49 59.2
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 2.0e-09 65.5 49 67.3
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 2.0e-09 65.5 48 68.8
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.5e-09 65.1 49 61.2
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 4.3e-09 64.3 49 63.3
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 4.3e-09 64.3 48 66.7
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 4.3e-09 64.3 48 66.7
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 4.3e-09 64.3 48 66.7
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 5.7e-09 63.9 49 61.2
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 7.4e-09 63.5 48 66.7
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.3e-08 62.8 49 61.2
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.3e-08 62.8 49 61.2
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.3e-08 62.8 49 61.2
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.7e-08 62.4 49 61.2
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 2.2e-08 62.0 49 65.3
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 2.2e-08 62.0 49 63.3
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 2.8e-08 61.6 49 59.2
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 4.8e-08 60.8 49 55.1
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 4.8e-08 60.8 45 64.4
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 8.2e-08 60.1 48 62.5
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 8.2e-08 60.1 49 53.1
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 8.2e-08 60.1 49 57.1
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.4e-07 59.3 49 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.8e-07 58.9 49 55.1
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 2.4e-07 58.5 49 57.1
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 4.1e-07 57.8 49 61.2
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 2.0e-06 55.5 41 70.7
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 4.5e-06 54.3 41 70.7
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 4.5e-06 54.3 41 65.9


User provided reference genes

Program Settings