Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033192.2 Cucumis melo HOM05D007483 ORTHO05D009133 1.7e-43 178.7 78 100.0
Sed0013393 Sechium edule HOM05D007483 ORTHO05D009133 1.2e-33 146.0 74 90.5
ClCG04G008120 Citrullus lanatus HOM05D007483 ORTHO05D009133 1.6e-33 145.6 74 89.2
Os02g0260400 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 4.8e-30 134.0 71 81.7
FvH4_6g13510 Fragaria vesca HOM05D007483 ORTHO05D009133 1.4e-29 132.5 71 80.3
CiPaw.09G194400 Carya illinoinensis HOM05D007483 ORTHO05D009133 4.1e-29 131.0 70 82.9
FAN09G2152 Fragaria x ananassa HOM05D007483 ORTHO05D009133 5.4e-29 130.6 70 80.0
FAN14G1457 Fragaria x ananassa HOM05D007483 ORTHO05D009133 9.1e-29 129.8 70 80.0
Cfa017361 Carpinus fangiana HOM05D007483 ORTHO05D009133 1.2e-28 129.4 74 77.0
Eucgr.A01276 Eucalyptus grandis HOM05D007483 ORTHO05D009133 1.2e-28 129.4 72 80.6
EL10Ac6g14169 Beta vulgaris HOM05D007483 ORTHO05D009133 1.6e-28 129.0 70 81.4
ECA247G0729 Erigeron canadensis HOM05D001424 ORTHO05D009133 1.6e-28 129.0 74 77.0
TWI74G0092 Tripterygium wilfordii HOM05D007483 ORTHO05D009133 1.6e-28 129.0 68 82.4
SEGI_13406 Sequoiadendron giganteum HOM05D007483 ORTHO05D009133 2.0e-28 128.6 71 78.9
Cfa016672 Carpinus fangiana HOM05D007483 ORTHO05D009133 2.7e-28 128.3 70 80.0
Dinv35587 Davidia involucrata HOM05D007483 ORTHO05D009133 2.7e-28 128.3 70 81.4
FAN02G3616 Fragaria x ananassa HOM05D007483 ORTHO05D009133 2.7e-28 128.3 70 78.6
Potri.016G099700 Populus trichocarpa HOM05D007483 ORTHO05D009133 3.5e-28 127.9 66 84.8
Sabra16G0100900 Salix brachista HOM05D007483 ORTHO05D009133 3.5e-28 127.9 66 84.8
GSVIVG01034153001 Vitis vinifera HOM05D007483 ORTHO05D009133 3.5e-28 127.9 70 81.4
DCAR_028750 Daucus carota HOM05D007483 ORTHO05D009133 5.9e-28 127.1 70 81.4
Thecc.05G037700 Theobroma cacao HOM05D007483 ORTHO05D009133 5.9e-28 127.1 70 80.0
Duzib093G2195 Durio zibethinus HOM05D007483 ORTHO05D009133 7.7e-28 126.7 70 80.0
Migut.J00322 Erythranthe guttata HOM05D007483 ORTHO05D009133 7.7e-28 126.7 70 80.0
Manes.08G088800 Manihot esculenta HOM05D007483 ORTHO05D009133 7.7e-28 126.7 73 76.7
RcHm_v2.0_Chr3g0466381 Rosa chinensis HOM05D007483 ORTHO05D009133 7.7e-28 126.7 70 77.1
Aqoxy1G00916 Aquilegia oxysepala HOM05D007483 ORTHO05D009133 1.0e-27 126.3 70 77.1
CAN.G324.11 Capsicum annuum HOM05D007483 ORTHO05D009133 1.0e-27 126.3 70 80.0
FAN05G4215 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.0e-27 126.3 70 77.1
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 1.0e-27 126.3 70 78.6
MSTRG.19078 Avicennia marina HOM05D007483 ORTHO05D009133 1.3e-27 125.9 69 81.2
AUR62025813 Chenopodium quinoa HOM05D007483 ORTHO05D009133 1.3e-27 125.9 73 76.7
Solyc10g084810.3 Solanum lycopersicum HOM05D007483 ORTHO05D009133 1.3e-27 125.9 70 78.6
Sopen10g034250 Solanum pennellii HOM05D007483 ORTHO05D009133 1.3e-27 125.9 70 78.6
Os11g0706100 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 1.7e-27 125.6 70 77.1
QL07p048670 Quercus lobata HOM05D007483 ORTHO05D009133 1.7e-27 125.6 70 78.6
THA.LOC104816252 Tarenaya hassleriana HOM05D007483 ORTHO05D009133 2.2e-27 125.2 73 75.3
Lsat_1_v5_gn_9_30381 Lactuca sativa HOM05D007483 ORTHO05D009133 2.9e-27 124.8 70 78.6
PSO063G2390 Papaver somniferum HOM05D007483 ORTHO05D009133 2.9e-27 124.8 64 82.8
Prupe.6G257100 Prunus persica HOM05D007483 ORTHO05D009133 2.9e-27 124.8 72 76.4
HanXRQChr16g0497811 Helianthus annuus HOM05D007483 ORTHO05D009133 3.8e-27 124.4 70 77.1
MD12G1143600 Malus domestica HOM05D007483 ORTHO05D009133 3.8e-27 124.4 73 74.0
Oeu007795.1 Olea europaea HOM05D007483 ORTHO05D009133 3.8e-27 124.4 70 78.6
VMungo0331G1516 Vigna mungo HOM05D007483 ORTHO05D009133 3.8e-27 124.4 73 75.3
Peaxi162Scf00094g01112 Petunia axillaris HOM05D007483 ORTHO05D009133 6.5e-27 123.6 75 74.7
Hund10634 Selenicereus undatus HOM05D007483 ORTHO05D009133 6.5e-27 123.6 70 78.6
Gohir.A12G221500 Gossypium hirsutum HOM05D007483 ORTHO05D009133 8.5e-27 123.2 70 75.7
Gohir.D12G223900 Gossypium hirsutum HOM05D007483 ORTHO05D009133 8.5e-27 123.2 70 75.7
Phvul.010G011100 Phaseolus vulgaris HOM05D007483 ORTHO05D009133 8.5e-27 123.2 73 74.0
Actinidia13151 Actinidia chinensis HOM05D007483 ORTHO05D009133 1.1e-26 122.9 65 84.6
C05p58700 Brassica napus HOM05D007483 ORTHO05D009133 2.5e-26 121.7 74 73.0
Thhalv10021669m.g Eutrema salsugineum HOM05D007483 ORTHO05D009133 2.5e-26 121.7 74 74.3
BolC5t34519H Brassica oleracea HOM05D007483 ORTHO05D009133 3.2e-26 121.3 68 76.5
Cc06_g02530 Coffea canephora HOM05D007483 ORTHO05D009133 3.2e-26 121.3 67 80.6
CARHR083670 Cardamine hirsuta HOM05D007483 ORTHO05D009133 5.5e-26 120.6 68 76.5
Nitab4.5_0000216g0380 Nicotiana tabacum HOM05D007483 ORTHO05D009133 5.5e-26 120.6 69 76.8
Sp3g07690 Schrenkiella parvula HOM05D007483 ORTHO05D009133 5.5e-26 120.6 73 72.6
Zm00001eb164460 Zea mays HOM05D007483 ORTHO05D009133 5.5e-26 120.6 69 73.9
BcaC05g29659 Brassica carinata HOM05D007483 ORTHO05D009133 7.2e-26 120.2 73 72.6
Ah.06g191870 Amaranthus hybridus HOM05D007483 ORTHO05D009133 9.4e-26 119.8 70 78.6
A05p39660 Brassica napus HOM05D007483 ORTHO05D009133 9.4e-26 119.8 74 73.0
BraA05t22748Z Brassica rapa HOM05D007483 ORTHO05D009133 9.4e-26 119.8 74 73.0
Aa31LG3G1800 Aethionema arabicum HOM05D007483 ORTHO05D009133 1.2e-25 119.4 66 78.8
HPP92_019244 Vanilla planifolia HOM05D007483 ORTHO05D009133 1.2e-25 119.4 68 73.5
AT3G09310 Arabidopsis thaliana HOM05D007483 ORTHO05D009133 1.6e-25 119.0 65 80.0
CANSAT11G2488 Cannabis sativa HOM05D007483 ORTHO05D009133 1.6e-25 119.0 70 72.9
Carub.0003s0842 Capsella rubella HOM05D007483 ORTHO05D009133 2.1e-25 118.6 73 71.2
PSO339G1657 Papaver somniferum HOM05D007483 ORTHO05D009133 2.7e-25 118.2 61 82.0
AL3G20460 Arabidopsis lyrata HOM05D007483 ORTHO05D009133 3.6e-25 117.9 68 73.5
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05D007483 ORTHO05D009133 4.7e-25 117.5 71 70.4
arahy.Tifrunner.gnm1.ann1.29J2UD Arachis hypogaea HOM05D007483 ORTHO05D009133 4.7e-25 117.5 65 76.9
arahy.Tifrunner.gnm1.ann1.A9IP9X Arachis hypogaea HOM05D007483 ORTHO05D009133 4.7e-25 117.5 65 76.9
BcaC05g29522 Brassica carinata HOM05D007483 ORTHO05D009133 4.7e-25 117.5 74 70.3
Ca_05061_v3 Cicer arietinum L. HOM05D007483 ORTHO05D009133 4.7e-25 117.5 73 71.2
Lj3g0014039 Lotus japonicus HOM05D007483 ORTHO05D009133 6.1e-25 117.1 72 72.2
SGA_v2.0_scaffold126G33776 Striga asiatica HOM05D007483 ORTHO05D009133 1.0e-24 116.3 70 75.7
Lalb_Chr07g0193781 Lupinus albus HOM05D007483 ORTHO05D009133 1.8e-24 115.5 65 73.8
Glyma.03G066000 Glycine max HOM05D007483 ORTHO05D009133 2.3e-24 115.2 65 73.8
Medtr4g021820 Medicago truncatula HOM05D007483 ORTHO05D009133 2.3e-24 115.2 73 68.5
Pp3c15_21390 Physcomitrium patens HOM05D007483 ORTHO05D009133 2.3e-24 115.2 69 72.5
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 2.3e-24 115.2 70 72.9
Mapoly0019s0017 Marchantia polymorpha HOM05D007483 ORTHO05D009133 1.5e-23 112.5 70 68.6
TPR.G7337 Trifolium pratense HOM05D007483 ORTHO05D009133 1.5e-23 112.5 73 67.1
CBR_g19672 Chara braunii HOM05D007483 ORTHO05D009133 5.7e-23 110.5 68 69.1
SMO165G0096 Selaginella moellendorffii HOM05D007483 ORTHO05D009133 7.5e-23 110.2 67 73.1
Ciclev10012381m.g Citrus clementina HOM05D007483 ORTHO05D009133 3.7e-22 107.8 65 73.8
CsaV3_4G025070 Cucumis sativus L. HOM05D007483 ORTHO05D009133 4.9e-22 107.5 48 95.8
Cpa.g.sc169.23 Carica papaya HOM05D007483 ORTHO05D009133 3.1e-21 104.8 68 70.6
Sabra13G0104100 Salix brachista HOM05D007483 ORTHO05D009133 3.1e-21 104.8 51 88.2
MBI05_g28376_MAGBIO Magnolia biondii HOM05D007483 ORTHO05D009133 5.4e-21 104.0 47 93.6
TAR636G3143 Trochodendron aralioides HOM05D007483 ORTHO05D009133 2.7e-20 101.7 47 89.4
Rhsim04G0158000 Rhododendron simsii HOM05D007483 ORTHO05D009133 3.5e-20 101.3 48 89.6
PGSC0003DMG400011065 Solanum tuberosum HOM05D007483 ORTHO05D009133 2.3e-19 98.6 48 85.4
ATR0559G251 Amborella trichopoda HOM05D007483 ORTHO05D009133 1.1e-18 96.3 46 87.0
Nitab4.5_0000202g0060 Nicotiana tabacum HOM05D007483 ORTHO05D009133 1.9e-18 95.5 46 87.0
Lj2A93G81 Lonicera japonica HOM05D007483 ORTHO05D009133 2.5e-18 95.1 47 87.2
Cre17.g720183 Chlamydomonas reinhardtii HOM05D007483 ORTHO05D009133 3.6e-17 91.3 61 60.7
PRCOL_00002574 Prasinoderma coloniale HOM05D007483 ORTHO05D009133 1.7e-14 82.4 72 54.2
MCO07G608 Micromonas commoda HOM05D007483 ORTHO05D009133 1.6e-12 75.9 59 50.8
Psat2g094360 Pisum sativum HOM05D007483 ORTHO05D009133 4.9e-06 54.3 27 77.8


User provided reference genes

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