Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 5.2e-281 970.3 461 100.0
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 2.2e-271 938.3 461 96.1
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 9.7e-195 683.7 459 69.1
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 7.7e-192 674.1 459 66.7
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 7.7e-192 674.1 460 67.4
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 2.9e-191 672.2 457 68.3
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 3.3e-187 658.7 459 66.4
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 4.4e-187 658.3 377 83.6
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 1.7e-186 656.4 458 65.9
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 1.0e-183 647.1 459 64.5
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.2e-183 646.0 458 66.4
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 1.9e-182 642.9 460 65.9
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 4.2e-182 641.7 460 64.3
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 1.6e-181 639.8 457 65.6
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 2.8e-178 629.0 461 61.8
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 1.4e-177 626.7 463 62.9
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 9.1e-177 624.0 457 64.8
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 2.7e-176 622.5 463 62.4
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 5.0e-175 618.2 442 64.0
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 2.5e-174 615.9 460 62.4
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 5.5e-174 614.8 458 62.2
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 7.2e-174 614.4 434 66.1
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 2.1e-173 612.8 460 63.3
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 3.6e-173 612.1 458 61.8
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 4.7e-173 611.7 467 61.9
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 1.4e-172 610.1 475 61.7
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.8e-172 607.8 475 61.1
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 2.0e-171 606.3 459 61.4
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 3.4e-171 605.5 458 63.1
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 4.4e-171 605.1 423 67.4
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 7.5e-171 604.4 460 62.4
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.8e-170 601.7 475 60.8
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 1.4e-169 600.1 462 61.0
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 7.0e-169 597.8 460 61.7
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.0e-168 596.3 469 61.2
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 3.5e-168 595.5 439 62.9
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 5.0e-167 591.7 500 58.4
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 1.1e-166 590.5 460 60.2
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 1.5e-166 590.1 457 59.3
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 9.4e-166 587.4 457 59.7
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 2.1e-165 586.3 459 59.9
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 2.1e-165 586.3 463 59.6
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 2.1e-165 586.3 461 58.6
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 8.0e-165 584.3 461 58.6
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 8.0e-165 584.3 463 59.4
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.0e-164 583.9 462 60.6
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 5.2e-164 581.6 490 56.9
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 5.2e-164 581.6 457 59.3
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 6.8e-164 581.3 460 60.2
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 6.8e-164 581.3 476 59.0
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 3.4e-163 578.9 463 59.0
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 3.4e-163 578.9 463 59.0
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 3.4e-163 578.9 463 59.0
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 4.4e-163 578.6 460 60.0
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 8.3e-162 574.3 489 57.3
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 1.4e-161 573.5 485 57.1
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 3.1e-161 572.4 469 58.2
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 7.0e-161 571.2 488 56.8
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 1.2e-160 570.5 439 60.1
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 5.6e-158 561.6 474 57.8
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 3.7e-154 548.9 420 61.4
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 2.4e-153 546.2 341 72.7
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 9.2e-153 544.3 341 72.7
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.9e-150 536.6 448 58.0
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 1.6e-144 516.9 424 59.4
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 1.7e-143 513.5 513 51.1
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 2.3e-143 513.1 406 60.3
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 6.6e-143 511.5 375 65.1
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 7.3e-142 508.1 505 50.3
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 2.8e-141 506.1 393 58.8
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 1.4e-140 503.8 472 53.0
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.8e-140 503.4 539 47.3
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 4.9e-138 495.4 341 67.2
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 6.4e-138 495.0 337 65.6
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 7.1e-137 491.5 458 52.2
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.6e-136 490.3 577 45.1
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 2.7e-136 489.6 400 60.0
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 9.5e-134 481.1 556 45.3
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 2.3e-132 476.5 440 52.7
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.9e-127 459.1 389 55.3
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 3.1e-124 449.5 377 58.4
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 2.2e-122 443.4 346 61.0
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 1.3e-117 427.6 400 52.5
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 8.1e-117 424.9 379 54.6
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 2.7e-112 409.8 414 49.8
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 8.7e-111 404.8 456 47.6
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 2.9e-106 389.8 459 46.0
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 1.1e-92 344.7 301 57.5
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 9.0e-92 341.7 422 44.3
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 6.5e-90 335.5 259 59.5
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 5.7e-86 322.4 194 71.6
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 9.7e-86 321.6 244 63.1
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 1.3e-85 321.2 263 56.7
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 2.5e-81 307.0 218 63.8
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 3.2e-81 306.6 458 39.5
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 1.4e-79 301.2 257 56.8
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 1.4e-76 291.2 212 65.1
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.4e-76 291.2 296 50.3
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.2e-72 278.1 496 36.3
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 9.7e-70 268.5 165 71.5
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 8.5e-66 255.4 501 31.1
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 2.7e-64 250.4 231 57.6
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 1.0e-63 248.4 155 71.6
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 8.8e-63 245.4 155 71.0
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 5.7e-62 242.7 220 55.9
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 5.2e-55 219.5 428 29.4
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 5.7e-46 189.5 104 90.4
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.7e-45 188.0 180 50.6
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 4.5e-43 179.9 252 40.5
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 1.0e-42 178.7 252 40.5
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.3e-42 178.3 301 31.9
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 1.9e-41 174.5 234 40.6
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 2.5e-33 147.5 91 72.5
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 5.6e-33 146.4 77 79.2
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 2.1e-32 144.4 545 24.0
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 5.2e-31 139.8 134 53.0
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 1.2e-30 138.7 87 70.1
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 1.7e-26 124.8 66 75.8
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 2.3e-26 124.4 68 75.0
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 5.6e-25 119.8 123 49.6
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 8.1e-24 115.9 104 54.8
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 4.4e-22 110.2 78 64.1
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 7.5e-22 109.4 109 50.5
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 6.4e-21 106.3 224 28.1
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 1.9e-20 104.8 94 55.3
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 2.4e-20 104.4 220 27.3
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 4.3e-17 93.6 85 56.5
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 7.1e-12 76.3 54 61.1
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 1.6e-11 75.1 85 47.1
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 3.0e-10 70.9 42 69.0
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 6.6e-10 69.7 95 38.9
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 9.0e-07 59.3 108 36.1
Oeu005559.1 Olea europaea HOM05D001972 ORTHO05D002555 9.9e-06 55.8 107 34.6


User provided reference genes

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