Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.7e-20 101.7 49 100.0
MELO3C001761.2 Cucumis melo HOM05D003877 ORTHO05D034944 3.3e-16 87.4 42 100.0
MELO3C031846.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.6e-15 85.1 42 97.6
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.1e-14 80.9 39 97.4
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.2e-13 79.0 39 94.9
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.2e-10 68.9 43 72.1
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 2.0e-10 68.2 39 79.5
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.0e-10 68.2 40 77.5
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.0e-10 68.2 42 71.4
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 6.0e-10 66.6 39 76.9
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 6.0e-10 66.6 39 76.9
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.0e-10 66.6 40 75.0
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 7.8e-10 66.2 39 76.9
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 7.8e-10 66.2 39 76.9
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 7.8e-10 66.2 39 76.9
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 7.8e-10 66.2 39 79.5
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 7.8e-10 66.2 42 71.4
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.0e-09 65.9 42 71.4
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.0e-09 65.9 39 76.9
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.0e-09 65.9 39 76.9
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.0e-09 65.9 39 76.9
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.0e-09 65.9 42 71.4
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.0e-09 65.9 42 71.4
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.0e-09 65.9 42 71.4
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.3e-09 65.5 39 76.9
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.3e-09 65.5 39 74.4
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.3e-09 65.5 39 74.4
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.3e-09 65.5 39 76.9
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-09 65.5 43 69.8
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.7e-09 65.1 39 74.4
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.7e-09 65.1 39 76.9
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.7e-09 65.1 39 71.8
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 2.3e-09 64.7 39 74.4
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 2.3e-09 64.7 39 74.4
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 2.3e-09 64.7 39 74.4
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.3e-09 64.7 40 72.5
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.3e-09 64.7 42 71.4
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.3e-09 64.7 39 74.4
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 3.0e-09 64.3 39 69.2
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.0e-09 64.3 40 72.5
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.0e-09 64.3 39 71.8
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 3.0e-09 64.3 39 71.8
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 3.9e-09 63.9 39 71.8
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 3.9e-09 63.9 39 71.8
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 3.9e-09 63.9 39 71.8
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 3.9e-09 63.9 39 69.2
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 5.0e-09 63.5 39 71.8
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 5.0e-09 63.5 39 71.8
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 5.0e-09 63.5 39 71.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 5.0e-09 63.5 39 71.8
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 5.0e-09 63.5 39 71.8
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 5.0e-09 63.5 39 71.8
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 5.0e-09 63.5 39 71.8
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 5.0e-09 63.5 39 71.8
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.6e-09 63.2 47 57.4
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.6e-09 63.2 39 71.8
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.6e-09 63.2 39 71.8
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 6.6e-09 63.2 39 69.2
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 8.6e-09 62.8 39 71.8
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 8.6e-09 62.8 39 71.8
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 8.6e-09 62.8 39 71.8
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 8.6e-09 62.8 39 69.2
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 69.2
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 69.2
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 66.7
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.1e-08 62.4 41 65.9
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 71.8
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 71.8
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 69.2
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.1e-08 62.4 42 69.0
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.1e-08 62.4 42 69.0
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 69.2
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 69.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.1e-08 62.4 42 66.7
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 1.1e-08 62.4 42 66.7
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.1e-08 62.4 39 69.2
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.1e-08 62.4 40 72.5
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.5e-08 62.0 39 66.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.5e-08 62.0 39 69.2
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.5e-08 62.0 39 71.8
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.5e-08 62.0 42 69.0
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.5e-08 62.0 39 69.2
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.5e-08 62.0 44 63.6
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.5e-08 62.0 39 69.2
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 69.2
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 69.2
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 69.2
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 69.2
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.9e-08 61.6 42 66.7
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 69.2
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 69.2
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 66.7
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 69.2
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.9e-08 61.6 39 71.8
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.5e-08 61.2 39 69.2
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.5e-08 61.2 39 69.2
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 2.5e-08 61.2 36 77.8
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 2.5e-08 61.2 36 77.8
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.5e-08 61.2 39 66.7
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 3.3e-08 60.8 39 69.2
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.3e-08 60.8 40 67.5
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.3e-08 60.8 42 64.3
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 4.3e-08 60.5 39 69.2
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 4.3e-08 60.5 39 66.7
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 4.3e-08 60.5 39 69.2
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 4.3e-08 60.5 39 66.7
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 5.6e-08 60.1 39 66.7
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-08 60.1 38 71.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-08 60.1 38 71.1
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 5.6e-08 60.1 39 66.7
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.6e-08 60.1 39 69.2
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.6e-08 60.1 39 69.2
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.6e-08 60.1 39 69.2
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 5.6e-08 60.1 39 66.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 5.6e-08 60.1 39 69.2
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.6e-08 60.1 39 66.7
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 7.3e-08 59.7 39 69.2
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 7.3e-08 59.7 39 69.2
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 7.3e-08 59.7 39 66.7
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 7.3e-08 59.7 39 66.7
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 9.5e-08 59.3 39 64.1
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 9.5e-08 59.3 39 64.1
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 9.5e-08 59.3 39 64.1
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.5e-08 59.3 40 62.5
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.2e-07 58.9 39 66.7
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.2e-07 58.9 39 64.1
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.6e-07 58.5 39 64.1
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.6e-07 58.5 36 72.2
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 2.1e-07 58.2 39 66.7
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.1e-07 58.2 39 66.7
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.1e-07 58.2 39 66.7
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.1e-07 58.2 39 66.7
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 2.1e-07 58.2 39 66.7
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 2.8e-07 57.8 39 69.2
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 3.6e-07 57.4 39 61.5
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 3.6e-07 57.4 37 70.3
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.7e-07 57.0 39 64.1
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 4.7e-07 57.0 39 66.7
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 4.7e-07 57.0 41 58.5
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 6.2e-07 56.6 39 66.7
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 6.2e-07 56.6 39 64.1
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.1e-06 55.8 39 61.5
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.4e-06 55.5 39 61.5
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.8e-06 55.1 42 61.9
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.8e-06 55.1 42 61.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 8.9e-06 52.8 40 65.0


User provided reference genes

Program Settings