Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 3.7e-120 434.9 219 100.0
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 2.3e-101 372.5 245 79.6
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 3.9e-93 345.1 244 70.9
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 3.2e-87 325.5 223 74.9
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 8.2e-51 204.5 243 46.9
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 9.4e-47 191.0 242 46.3
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.7e-46 189.5 240 43.3
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 3.6e-46 189.1 240 45.0
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 3.6e-46 189.1 242 45.9
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 7.9e-46 188.0 242 43.0
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.8e-45 186.8 244 40.6
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 3.9e-45 185.7 242 44.2
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 5.1e-45 185.3 243 43.2
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 8.8e-45 184.5 243 44.4
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 4.8e-43 178.7 205 48.8
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 4.8e-43 178.7 244 43.4
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 6.3e-43 178.3 241 41.9
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 8.2e-43 177.9 243 42.4
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 8.2e-43 177.9 243 42.4
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.2e-43 177.9 244 38.1
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 8.2e-43 177.9 243 40.7
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.4e-42 177.2 233 44.6
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.8e-42 176.8 242 43.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 3.1e-42 176.0 243 41.6
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 5.3e-42 175.3 244 41.4
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 6.9e-42 174.9 244 37.7
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.9e-42 174.9 244 37.7
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.2e-41 174.1 244 41.4
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 1.2e-41 174.1 244 40.6
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.6e-41 172.9 243 42.8
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.6e-41 172.9 244 41.0
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.4e-41 172.6 244 37.3
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 1.3e-40 170.6 254 40.9
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.2e-40 169.9 244 36.5
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.2e-40 169.9 244 36.5
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 2.2e-40 169.9 274 39.1
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.8e-40 169.1 241 41.1
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 3.8e-40 169.1 244 41.8
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 5.0e-40 168.7 243 41.2
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 6.5e-40 168.3 241 39.0
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 1.4e-39 167.2 250 38.4
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.4e-39 167.2 244 41.0
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 5.5e-39 165.2 244 38.9
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 5.5e-39 165.2 248 40.7
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 7.2e-39 164.9 217 44.2
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.2e-38 164.1 249 38.6
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.2e-38 164.1 244 41.8
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 2.1e-38 163.3 241 38.6
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.0e-37 161.0 242 39.7
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.4e-37 160.6 247 39.3
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.8e-37 160.2 261 41.0
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 3.0e-37 159.5 244 39.8
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 3.0e-37 159.5 248 39.5
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 3.0e-37 159.5 241 41.5
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 8.8e-37 157.9 236 39.4
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.0e-36 156.8 241 37.8
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.7e-36 155.2 201 39.8
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 5.7e-36 155.2 241 37.8
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-35 154.1 247 38.1
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-35 154.1 247 38.1
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.3e-35 154.1 244 39.8
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 2.8e-35 152.9 219 41.6
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 3.7e-35 152.5 243 39.1
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.1e-34 151.0 226 38.9
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.4e-34 150.6 244 37.7
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.4e-34 150.6 247 38.5
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 2.4e-34 149.8 243 36.2
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 3.1e-34 149.4 248 39.5
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 4.1e-34 149.1 242 37.6
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 7.0e-34 148.3 217 40.6
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.6e-33 147.1 241 34.9
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.6e-33 147.1 241 34.9
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.6e-33 147.1 241 34.9
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.6e-33 146.4 242 35.5
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.2e-32 143.3 242 38.0
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 3.8e-32 142.5 242 38.8
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 5.0e-32 142.1 75 92.0
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 8.5e-32 141.4 244 36.5
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-31 140.6 235 37.4
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-31 140.2 235 36.6
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-31 139.8 238 36.6
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 5.5e-31 138.7 243 33.7
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.2e-31 138.3 241 34.4
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-31 138.3 235 36.6
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-31 138.3 235 36.6
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-31 138.3 235 36.6
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-31 138.3 235 36.6
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-30 137.5 235 36.2
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-30 137.1 235 36.2
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-30 136.7 235 36.2
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 2.7e-30 136.3 246 36.6
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-30 136.3 235 36.6
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-30 136.3 234 36.8
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.7e-30 135.6 241 34.9
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.0e-30 134.8 241 35.7
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 6.7e-29 131.7 236 35.6
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 9.7e-28 127.9 241 34.4
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 9.7e-28 127.9 145 45.5
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 2.2e-27 126.7 241 32.8
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 2.8e-27 126.3 240 33.8
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 6.3e-27 125.2 242 33.1
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.8e-26 123.6 139 46.0
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.3e-26 122.1 221 35.7
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.0e-25 120.2 162 42.6
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 4.5e-25 119.0 243 38.3
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 2.9e-24 116.3 232 32.3
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 3.8e-24 115.9 241 38.2
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.0e-24 115.5 154 45.5
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.5e-23 114.0 139 46.8
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 1.9e-23 113.6 234 35.0
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 4.2e-23 112.5 241 38.2
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 9.4e-23 111.3 236 35.2
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.6e-22 110.5 265 30.6
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.7e-22 109.8 239 35.6
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.7e-22 109.8 239 33.9
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 4.7e-22 109.0 239 32.6
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 6.1e-22 108.6 237 35.0
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 6.1e-22 108.6 239 35.1
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 6.1e-22 108.6 240 32.5
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.3e-21 106.7 237 35.0
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.3e-21 106.7 237 35.0
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 2.3e-21 106.7 187 36.9
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 6.8e-21 105.1 239 33.5
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-20 104.0 154 37.0
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-20 104.0 174 34.5
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 2.0e-20 103.6 236 33.1
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.0e-20 103.6 219 34.7
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-20 102.1 154 37.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.7e-19 100.5 196 33.2
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.7e-19 99.4 158 36.1
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 6.3e-19 98.6 242 33.9
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 6.3e-19 98.6 242 33.9
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-18 97.1 136 41.2
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.4e-18 96.7 242 33.5
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-18 95.9 136 41.2
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 7.7e-17 91.7 193 33.2
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.2e-14 84.3 67 61.2
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 7.5e-12 75.1 213 30.0
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 1.6e-09 67.4 198 25.8
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 7.3e-07 58.5 135 28.1
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 3.6e-06 56.2 133 33.1
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 6.1e-06 55.5 76 39.5


User provided reference genes

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