Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033009.2 Cucumis melo HOM05D002560 ORTHO05D022477 1.1e-125 453.4 229 100.0
MELO3C027407.2 Cucumis melo HOM05D002560 ORTHO05D003782 5.8e-100 367.9 395 55.9
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 1.8e-93 346.3 381 54.3
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 1.5e-92 343.2 381 54.1
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 1.4e-85 320.1 381 52.0
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 3.6e-73 278.9 317 52.4
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 2.2e-70 269.6 373 46.1
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 5.9e-68 261.5 382 44.8
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 6.5e-67 258.1 379 43.5
VMungo1383G3009 Vigna mungo HOM05D002560 ORTHO05D003782 1.1e-66 257.3 374 43.9
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 2.5e-66 256.1 368 44.6
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 4.2e-66 255.4 366 45.6
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.6e-65 253.4 363 45.5
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 2.1e-65 253.1 366 46.2
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 2.7e-65 252.7 375 43.7
CAN.G133.1 Capsicum annuum HOM05D002560 ORTHO05D003782 3.6e-65 252.3 346 47.1
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 3.6e-65 252.3 381 42.5
COL.COLO4_08633 Corchorus olitorius HOM05D002560 ORTHO05D003782 1.0e-64 250.8 369 44.7
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 1.0e-64 250.8 370 43.8
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 1.0e-64 250.8 375 43.7
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.4e-64 250.4 380 42.9
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 1.8e-64 250.0 379 42.7
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.3e-64 249.6 377 44.3
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 2.3e-64 249.6 373 43.2
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 2.3e-64 249.6 373 44.2
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 2.3e-64 249.6 373 44.2
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 2.3e-64 249.6 373 44.2
Actinidia32554 Actinidia chinensis HOM05D002560 ORTHO05D003782 5.2e-64 248.4 381 43.3
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 6.8e-64 248.1 381 43.6
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 6.8e-64 248.1 370 43.5
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 6.8e-64 248.1 379 43.0
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 8.8e-64 247.7 381 42.8
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 1.2e-63 247.3 380 42.1
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 1.5e-63 246.9 378 42.6
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 2.0e-63 246.5 371 43.7
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 3.4e-63 245.7 365 43.6
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.7e-63 245.0 371 44.2
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.7e-63 245.0 371 44.2
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 5.7e-63 245.0 371 44.2
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 7.5e-63 244.6 374 43.9
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 7.5e-63 244.6 371 43.1
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 9.7e-63 244.2 377 42.4
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 2.2e-62 243.0 372 44.1
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 2.2e-62 243.0 381 42.5
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 2.8e-62 242.7 371 43.7
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 3.7e-62 242.3 367 44.4
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 6.3e-62 241.5 373 43.7
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 6.3e-62 241.5 366 42.6
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 8.3e-62 241.1 381 42.5
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 1.1e-61 240.7 381 43.0
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 1.1e-61 240.7 369 43.1
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.4e-61 240.4 384 42.2
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 2.4e-61 239.6 369 43.4
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 4.1e-61 238.8 364 43.7
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 4.1e-61 238.8 409 40.8
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 4.1e-61 238.8 373 43.4
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 4.1e-61 238.8 379 42.2
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 5.3e-61 238.4 370 43.5
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 5.3e-61 238.4 151 74.2
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 7.0e-61 238.0 360 43.1
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 9.1e-61 237.7 364 43.7
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 9.1e-61 237.7 374 43.9
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 1.6e-60 236.9 369 43.1
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.6e-60 236.9 382 41.1
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 1.6e-60 236.9 377 43.2
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.0e-60 236.5 377 41.4
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.5e-60 235.7 406 40.4
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 4.5e-60 235.3 406 40.4
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 4.5e-60 235.3 406 40.4
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 5.9e-60 235.0 387 41.9
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 1.0e-59 234.2 354 42.9
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 2.2e-59 233.0 372 42.5
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 3.8e-59 232.3 375 43.7
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 6.5e-59 231.5 380 40.3
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 6.5e-59 231.5 383 42.6
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 8.5e-59 231.1 383 41.8
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 4.2e-58 228.8 373 40.8
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 4.2e-58 228.8 370 41.4
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 4.2e-58 228.8 370 41.4
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 4.2e-58 228.8 379 41.2
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 9.4e-58 227.6 362 42.0
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 1.2e-57 227.3 368 42.7
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.6e-57 225.7 374 42.2
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 3.6e-57 225.7 377 40.3
arahy.Tifrunner.gnm1.ann1.D1231E Arachis hypogaea HOM05D002560 ORTHO05D003782 4.7e-57 225.3 364 41.8
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 6.1e-57 224.9 363 43.8
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 8.0e-57 224.6 373 41.8
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.4e-56 223.8 364 41.5
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.4e-56 223.8 155 72.3
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.8e-56 223.4 357 40.1
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 1.8e-56 223.4 373 41.0
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 2.3e-56 223.0 375 39.7
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 2.3e-56 223.0 371 41.0
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 2.3e-56 223.0 367 42.2
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 3.0e-56 222.6 151 72.8
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 5.2e-56 221.9 357 39.8
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.2e-55 220.7 362 40.6
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.2e-55 220.7 362 40.6
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 1.5e-55 220.3 370 40.5
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.5e-55 220.3 378 41.0
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.5e-55 220.3 362 42.8
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 2.0e-55 219.9 375 39.2
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 2.0e-55 219.9 362 42.3
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 2.6e-55 219.5 151 72.8
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 2.6e-55 219.5 381 40.7
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 3.4e-55 219.2 374 39.3
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 3.4e-55 219.2 380 38.7
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 3.4e-55 219.2 377 41.1
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 7.5e-55 218.0 378 40.7
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 9.8e-55 217.6 380 38.4
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 1.3e-54 217.2 386 40.4
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 2.8e-54 216.1 372 41.1
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 3.7e-54 215.7 362 42.0
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 3.7e-54 215.7 204 55.4
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 4.8e-54 215.3 364 41.2
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 1.1e-53 214.2 375 41.3
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.4e-53 213.8 362 41.7
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 1.4e-53 213.8 371 40.7
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.8e-53 213.4 362 41.7
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 2.4e-53 213.0 362 41.7
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 4.1e-53 212.2 362 41.4
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 5.4e-53 211.8 362 40.6
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 1.6e-52 210.3 352 43.2
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 7.7e-52 208.0 376 39.1
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 6.6e-51 204.9 351 40.5
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 6.6e-51 204.9 355 40.0
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 8.6e-51 204.5 364 40.1
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 1.1e-50 204.1 355 40.0
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.1e-50 204.1 362 41.4
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.9e-50 203.4 363 39.9
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 1.9e-50 203.4 362 40.6
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 1.9e-50 203.4 363 40.8
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 1.9e-50 203.4 363 40.8
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 2.5e-50 203.0 355 39.7
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 2.5e-50 203.0 355 39.7
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 5.5e-50 201.8 362 40.6
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 9.5e-50 201.1 377 38.2
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 2.1e-49 199.9 207 55.6
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 2.1e-49 199.9 382 37.7
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 8.0e-49 198.0 378 36.5
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.2e-47 194.1 364 39.0
Lj2C63G17 Lonicera japonica HOM05D002560 ORTHO05D003782 2.6e-47 193.0 336 40.8
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 5.7e-47 191.8 377 36.9
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.3e-46 190.7 383 36.6
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 8.3e-46 188.0 354 37.9
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 3.2e-45 186.0 365 37.3
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 2.7e-44 183.0 204 49.5
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 4.5e-44 182.2 178 52.2
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 2.9e-43 179.5 355 35.5
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 2.9e-43 179.5 360 38.3
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 4.3e-42 175.6 377 34.5
Sopen10g027940 Solanum pennellii HOM05D002560 ORTHO05D003782 5.6e-42 175.3 200 51.5
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 9.5e-42 174.5 377 34.5
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 4.0e-40 169.1 373 37.0
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 3.2e-37 159.5 369 33.6
Haze_01994 Corylus avellana HOM05D002560 ORTHO05D003782 5.0e-35 152.1 123 65.9
Sopen10g027930 Solanum pennellii HOM05D002560 ORTHO05D013637 2.5e-34 149.8 105 68.6
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 6.2e-33 145.2 369 32.5
Cpa.g.sc86.8 Carica papaya HOM05D002560 ORTHO05D003782 3.1e-32 142.9 325 34.5
Zm00001eb195140 Zea mays HOM05D002560 ORTHO05D003782 4.0e-32 142.5 370 32.2
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 6.8e-24 115.2 203 38.9
Cfa012921 Carpinus fangiana HOM05D002560 ORTHO05D003782 3.7e-22 109.4 151 43.7
CSS0033860 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 8.3e-22 108.2 190 39.5
Cpa.g.sc86.11 Carica papaya HOM05D002560 ORTHO05D013637 2.7e-20 103.2 75 70.7
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.1e-18 97.8 347 28.0
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.9e-18 97.1 191 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 2.1e-17 93.6 185 39.5
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 8.9e-16 88.2 169 39.1
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 8.9e-16 88.2 192 39.1
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 9.9e-15 84.7 106 51.9
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 1.3e-14 84.3 101 53.5
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 1.4e-13 80.9 71 66.2
Haze_01984 Corylus avellana HOM05D002560 ORTHO05D003782 1.9e-13 80.5 103 49.5
VMungo0647G0295 Vigna mungo HOM05D002560 ORTHO05D022477 1.9e-13 80.5 62 72.6
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.2e-13 79.3 60 73.3
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.2e-12 77.8 193 34.2
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.2e-12 77.8 152 35.5
Lsat_1_v5_gn_9_53601 Lactuca sativa HOM05D002511 ORTHO05D233172 4.6e-12 75.9 61 70.5
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 3.3e-10 69.7 57 66.7
Ah.15g090280 Amaranthus hybridus HOM05D002560 ORTHO05D003782 5.6e-10 68.9 87 51.7
MBI17_g18133_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 7.3e-10 68.6 61 67.2
Solyc10g076270.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 1.4e-08 64.3 68 60.3
Lsat_1_v5_gn_8_110661 Lactuca sativa HOM05D000331 ORTHO05D014383 1.2e-07 61.2 42 69.0
HanXRQChr10g0288611 Helianthus annuus HOM05D002560 ORTHO05D003782 1.7e-06 57.4 67 52.2


User provided reference genes

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