Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032914.2 Cucumis melo HOM05D000860 ORTHO05D006064 4.4e-59 231.1 118 100.0
MELO3C029864.2 Cucumis melo HOM05D000860 ORTHO05D006064 4.0e-44 181.4 95 96.8
MELO3C004860.2 Cucumis melo HOM05D000860 ORTHO05D006064 4.4e-43 177.9 95 93.7
MELO3C027253.2 Cucumis melo HOM05D000860 ORTHO05D006064 2.9e-42 175.3 95 94.7
CsaV3_7G003950 Cucumis sativus L. HOM05D000860 ORTHO05D006064 2.9e-42 175.3 95 92.6
MELO3C008658.2 Cucumis melo HOM05D000860 ORTHO05D006064 8.3e-42 173.7 95 92.6
MELO3C027993.2 Cucumis melo HOM05D000860 ORTHO05D006064 4.1e-41 171.4 95 92.6
ClCG02G001460 Citrullus lanatus HOM05D000860 ORTHO05D006064 7.8e-40 167.2 95 85.3
MELO3C000317.2 Cucumis melo HOM05D000860 ORTHO05D006064 7.8e-40 167.2 96 90.6
QL01p000412 Quercus lobata HOM05D000860 ORTHO05D006064 2.4e-33 145.6 94 75.5
CiPaw.04G120200 Carya illinoinensis HOM05D000860 ORTHO05D006064 1.0e-31 140.2 95 71.6
Cfa014481 Carpinus fangiana HOM05D000860 ORTHO05D006064 1.5e-30 136.3 95 71.6
Haze_12996 Corylus avellana HOM05D000860 ORTHO05D006064 1.2e-29 133.3 95 69.5
COL.COLO4_08562 Corchorus olitorius HOM05D000860 ORTHO05D006064 8.9e-28 127.1 95 63.2
Sed0003367 Sechium edule HOM05D000860 ORTHO05D006064 8.9e-28 127.1 95 66.3
Duzib116G0686 Durio zibethinus HOM05D000860 ORTHO05D006064 1.1e-25 120.2 95 60.0
Prupe.3G223700 Prunus persica HOM05D000860 ORTHO05D006064 9.3e-25 117.1 95 56.8
CANSAT64G2191 Cannabis sativa HOM05D000860 ORTHO05D006064 2.1e-24 115.9 96 60.4
Gorai.009G254500 Gossypium raimondii HOM05D000860 ORTHO05D006064 2.7e-24 115.5 95 56.8
Gohir.A05G243700 Gossypium hirsutum HOM05D000860 ORTHO05D006064 4.6e-24 114.8 95 56.8
Cpa.g.sc34.49 Carica papaya HOM05D000860 ORTHO05D006064 7.8e-24 114.0 95 55.8
MD09G1102000 Malus domestica HOM05D000860 ORTHO05D006064 1.3e-23 113.2 95 54.7
Thecc.08G153000 Theobroma cacao HOM05D000860 ORTHO05D006064 1.3e-23 113.2 95 57.9
TWI75G0472 Tripterygium wilfordii HOM05D000860 ORTHO05D006064 2.3e-23 112.5 95 55.8
Actinidia12480 Actinidia chinensis HOM05D000860 ORTHO05D006064 3.9e-23 111.7 93 60.2
Aqoxy1G03983 Aquilegia oxysepala HOM05D000860 ORTHO05D006064 6.6e-23 110.9 94 57.4
Sp7g24690 Schrenkiella parvula HOM05D000860 ORTHO05D006064 8.7e-23 110.5 94 53.2
Thhalv10027187m.g Eutrema salsugineum HOM05D000860 ORTHO05D006064 1.1e-22 110.2 94 53.2
MELO3C029959.2 Cucumis melo HOM05D000860 ORTHO05D006064 1.5e-22 109.8 63 88.9
Gohir.A03G029000 Gossypium hirsutum HOM05D000860 ORTHO05D006064 2.5e-22 109.0 95 53.7
SHI10287 Sapria himalayana HOM05D000860 ORTHO05D006064 2.5e-22 109.0 97 55.7
MD09G1127700 Malus domestica HOM05D000860 ORTHO05D006064 3.3e-22 108.6 95 52.6
TAR627G1143 Trochodendron aralioides HOM05D000860 ORTHO05D006064 4.3e-22 108.2 94 59.6
Aqoxy2G01929 Aquilegia oxysepala HOM05D000860 ORTHO05D006064 5.6e-22 107.8 93 57.0
BraA03t14755Z Brassica rapa HOM05D000860 ORTHO05D006064 5.6e-22 107.8 95 53.7
Gorai.003G146300 Gossypium raimondii HOM05D000860 ORTHO05D006064 5.6e-22 107.8 95 52.6
AL7G26100 Arabidopsis lyrata HOM05D000860 ORTHO05D006064 7.3e-22 107.5 94 51.1
Gohir.D03G139600 Gossypium hirsutum HOM05D000860 ORTHO05D006064 7.3e-22 107.5 95 51.6
PGR042G0516 Punica granatum HOM05D000860 ORTHO05D006064 9.6e-22 107.1 95 57.9
GSVIVG01000419001 Vitis vinifera HOM05D000860 ORTHO05D006064 1.3e-21 106.7 93 58.1
BcaC06g32732 Brassica carinata HOM05D000860 ORTHO05D006064 1.6e-21 106.3 95 52.6
Dinv10889 Davidia involucrata HOM05D000860 ORTHO05D006064 2.1e-21 105.9 94 56.4
Dinv13864 Davidia involucrata HOM05D000860 ORTHO05D006064 2.1e-21 105.9 94 56.4
A03p56870 Brassica napus HOM05D000860 ORTHO05D006064 2.8e-21 105.5 95 52.6
Aa31LG5G12200 Aethionema arabicum HOM05D000860 ORTHO05D006064 3.6e-21 105.1 95 51.6
Dinv18563 Davidia involucrata HOM05D000860 ORTHO05D006064 3.6e-21 105.1 94 57.4
BolC7t45993H Brassica oleracea HOM05D000860 ORTHO05D006064 4.8e-21 104.8 95 53.7
Carub.0007s1411 Capsella rubella HOM05D000860 ORTHO05D006064 4.8e-21 104.8 94 50.0
Sabra13G0122200 Salix brachista HOM05D000860 ORTHO05D006064 8.1e-21 104.0 91 57.1
CARHR234350 Cardamine hirsuta HOM05D000860 ORTHO05D006064 1.1e-20 103.6 94 50.0
Gohir.D05G244866 Gossypium hirsutum HOM05D000860 ORTHO05D006064 1.1e-20 103.6 76 61.8
Lalb_Chr19g0135621 Lupinus albus HOM05D000860 ORTHO05D006064 1.4e-20 103.2 96 55.2
C07p55200 Brassica napus HOM05D000860 ORTHO05D006064 2.4e-20 102.4 95 52.6
Hma1.2p1_0712F.1_g207590 Hydrangea macrophylla HOM05D000860 ORTHO05D006064 4.0e-20 101.7 96 55.2
Psat7g163240 Pisum sativum HOM05D000860 ORTHO05D006064 9.0e-20 100.5 96 56.2
RcHm_v2.0_Chr2g0160701 Rosa chinensis HOM05D000860 ORTHO05D006064 9.0e-20 100.5 95 49.5
AT2G16030 Arabidopsis thaliana HOM05D000860 ORTHO05D006064 1.2e-19 100.1 94 46.8
Migut.H01212 Erythranthe guttata HOM05D000860 ORTHO05D006064 1.2e-19 100.1 92 52.2
PSO017G4595 Papaver somniferum HOM05D000860 ORTHO05D006064 1.5e-19 99.8 101 54.5
Manes.12G078700 Manihot esculenta HOM05D000860 ORTHO05D006064 2.6e-19 99.0 97 51.5
Potri.019G125300 Populus trichocarpa HOM05D000860 ORTHO05D006064 2.6e-19 99.0 92 55.4
Aqoxy4G01788 Aquilegia oxysepala HOM05D000860 ORTHO05D006064 3.4e-19 98.6 94 51.1
SGA_v2.0_scaffold49G18328 Striga asiatica HOM05D000860 ORTHO05D006064 3.4e-19 98.6 92 50.0
Oeu040640.1 Olea europaea HOM05D000860 ORTHO05D006064 5.8e-19 97.8 92 50.0
FAN09G3393 Fragaria x ananassa HOM05D000860 ORTHO05D006064 9.9e-19 97.1 95 46.3
Medtr4g063440 Medicago truncatula HOM05D000860 ORTHO05D006064 1.7e-18 96.3 95 54.7
Potri.013G152100 Populus trichocarpa HOM05D000860 ORTHO05D006064 2.9e-18 95.5 92 53.3
SGA_v2.0_scaffold159G37586 Striga asiatica HOM05D000860 ORTHO05D006064 2.9e-18 95.5 92 50.0
Eucgr.A01742 Eucalyptus grandis HOM05D000860 ORTHO05D006064 3.8e-18 95.1 97 53.6
MSTRG.12291 Avicennia marina HOM05D000860 ORTHO05D006064 3.2e-17 92.0 92 46.7
FAN16G3168 Fragaria x ananassa HOM05D000860 ORTHO05D006064 9.3e-17 90.5 95 44.2
Ciclev10016548m.g Citrus clementina HOM05D000860 ORTHO05D006064 1.2e-16 90.1 95 47.4
Solyc02g091600.1 Solanum lycopersicum HOM05D000860 ORTHO05D006064 1.6e-16 89.7 93 47.3
Lj3g0007411 Lotus japonicus HOM05D000860 ORTHO05D006064 2.1e-16 89.4 96 51.0
PGSC0003DMG400030659 Solanum tuberosum HOM05D000860 ORTHO05D006064 2.7e-16 89.0 93 47.3
Cc05_g05560 Coffea canephora HOM05D000860 ORTHO05D006064 6.0e-16 87.8 98 50.0
Medtr4g046723 Medicago truncatula HOM05D000860 ORTHO05D006064 6.0e-16 87.8 89 53.9
Sopen02g036220 Solanum pennellii HOM05D000860 ORTHO05D006064 6.0e-16 87.8 93 46.2
DCAR_009702 Daucus carota HOM05D000860 ORTHO05D006064 7.9e-16 87.4 93 44.1
Phvul.011G108000 Phaseolus vulgaris HOM05D000860 ORTHO05D006064 1.3e-15 86.7 95 50.5
Nitab4.5_0007512g0030 Nicotiana tabacum HOM05D000860 ORTHO05D006064 1.8e-15 86.3 92 47.8
Thhalv10022104m.g Eutrema salsugineum HOM05D000860 ORTHO05D006064 6.7e-15 84.3 71 52.1
Atru.chr6.3106 Acer truncatum HOM05D000860 ORTHO05D006064 8.7e-15 84.0 92 44.6
Nitab4.5_0000291g0080 Nicotiana tabacum HOM05D000860 ORTHO05D006064 8.7e-15 84.0 92 45.7
CAN.G1061.28 Capsicum annuum HOM05D000860 ORTHO05D006064 1.1e-14 83.6 96 45.8
CDE02G4720 Ceratophyllum demersum HOM05D000860 ORTHO05D006064 1.1e-14 83.6 98 43.9
unitig_26.g9929 Utricularia gibba HOM05D000860 ORTHO05D006064 1.9e-14 82.8 91 44.0
VMungo1127G0801 Vigna mungo HOM05D000860 ORTHO05D006064 1.9e-14 82.8 90 46.7
Sopen02g014550 Solanum pennellii HOM05D000860 ORTHO05D006064 2.5e-14 82.4 84 52.4
PGSC0003DMG400010404 Solanum tuberosum HOM05D000860 ORTHO05D006064 5.6e-14 81.3 84 52.4
Ah.04g159810 Amaranthus hybridus HOM05D000735 ORTHO05D000838 7.4e-14 80.9 93 45.2
MELO3C030536.2 Cucumis melo HOM05D000860 ORTHO05D006064 1.3e-13 80.1 41 97.6
Solyc02g063460.1 Solanum lycopersicum HOM05D000860 ORTHO05D006064 2.1e-13 79.3 84 51.2
Rhsim06G0154700 Rhododendron simsii HOM05D000860 ORTHO05D006064 3.7e-13 78.6 87 50.6
HanXRQChr12g0361971 Helianthus annuus HOM05D000860 ORTHO05D006064 1.1e-12 77.0 97 46.4
AUR62000872 Chenopodium quinoa HOM05D000860 ORTHO05D006064 3.1e-12 75.5 89 48.3
AUR62005104 Chenopodium quinoa HOM05D000860 ORTHO05D006064 3.1e-12 75.5 89 48.3
Glyma.12G103300 Glycine max HOM05D000860 ORTHO05D006064 4.0e-12 75.1 85 48.2
MELO3C000919.2 Cucumis melo HOM05D031712 ORTHO05D169445 1.2e-11 73.6 60 70.0
EL10Ac4g09314 Beta vulgaris HOM05D000860 ORTHO05D006064 2.0e-11 72.8 85 48.2
Sabra19G0131100 Salix brachista HOM05D000860 ORTHO05D006064 9.9e-11 70.5 92 41.3
AL8G39340 Arabidopsis lyrata HOM05D000860 ORTHO05D006064 1.1e-09 67.0 62 51.6
AL3G51450 Arabidopsis lyrata HOM05D000860 ORTHO05D006064 3.2e-09 65.5 62 50.0
Nitab4.5_0000036g0430 Nicotiana tabacum HOM05D000860 ORTHO05D006064 9.3e-09 63.9 83 41.0
HPP92_001790 Vanilla planifolia HOM05D000860 ORTHO05D006064 2.7e-08 62.4 103 36.9
FAN05G2158 Fragaria x ananassa HOM05D000860 ORTHO05D006064 2.3e-07 59.3 55 47.3
ATR0804G076 Amborella trichopoda HOM05D000860 ORTHO05D006064 1.1e-06 57.0 82 34.1
Actinidia27025 Actinidia chinensis HOM05D000860 ORTHO05D006064 9.6e-06 53.9 44 63.6


User provided reference genes

Program Settings