Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 9.2e-273 943.0 481 100.0
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.1e-67 260.8 147 91.8
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 8.0e-67 258.8 147 90.5
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 9.8e-65 251.9 147 88.4
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 1.6e-59 234.6 147 81.6
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 7.8e-54 215.7 147 71.4
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.6e-53 212.6 152 77.6
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 8.6e-53 212.2 147 70.7
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 1.1e-52 211.8 147 71.4
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.1e-50 205.3 147 66.7
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 1.1e-50 205.3 147 67.3
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 3.1e-50 203.8 147 66.7
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 1.5e-49 201.4 147 67.3
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 1.5e-49 201.4 147 66.7
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 3.4e-49 200.3 147 68.0
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 3.4e-49 200.3 147 68.0
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 3.4e-49 200.3 147 63.9
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 7.6e-49 199.1 147 66.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 4.9e-48 196.4 147 66.7
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 6.4e-48 196.1 154 63.6
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 6.4e-48 196.1 153 63.4
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 8.4e-48 195.7 153 64.1
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 1.1e-47 195.3 147 65.3
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 1.9e-47 194.5 147 64.6
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 1.9e-47 194.5 147 64.6
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 1.9e-47 194.5 147 64.6
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 2.4e-47 194.1 147 65.3
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 3.2e-47 193.7 147 67.3
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 5.4e-47 193.0 147 66.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 5.4e-47 193.0 147 63.9
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 7.1e-47 192.6 147 66.7
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 7.1e-47 192.6 147 68.7
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 1.2e-46 191.8 147 68.0
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 1.2e-46 191.8 147 61.9
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 1.6e-46 191.4 147 65.3
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 2.1e-46 191.0 147 67.3
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 2.7e-46 190.7 154 62.3
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 3.5e-46 190.3 147 61.9
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 6.0e-46 189.5 144 64.6
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 2.3e-45 187.6 143 74.1
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 3.0e-45 187.2 154 59.7
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 3.9e-45 186.8 153 60.1
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 3.9e-45 186.8 153 60.1
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 6.6e-45 186.0 154 59.7
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 8.6e-45 185.7 147 60.5
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 8.6e-45 185.7 214 51.4
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 1.1e-44 185.3 147 61.2
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 1.1e-44 185.3 162 58.6
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 1.5e-44 184.9 153 60.1
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.5e-44 184.9 153 60.8
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 1.5e-44 184.9 188 53.2
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.9e-44 184.5 153 60.8
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 5.6e-44 183.0 147 60.5
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 7.3e-44 182.6 147 61.2
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 7.3e-44 182.6 147 64.6
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 9.6e-44 182.2 147 62.6
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 9.6e-44 182.2 147 61.2
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 1.2e-43 181.8 147 62.6
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 1.6e-43 181.4 153 58.8
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.6e-43 181.4 147 59.9
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 1.6e-43 181.4 147 63.3
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 2.1e-43 181.0 147 63.3
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 2.8e-43 180.6 147 59.2
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 2.8e-43 180.6 147 59.2
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 2.8e-43 180.6 147 59.2
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 2.8e-43 180.6 147 59.9
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 8.1e-43 179.1 147 60.5
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 1.1e-42 178.7 147 59.2
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 1.1e-42 178.7 153 58.2
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 1.4e-42 178.3 147 58.5
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.4e-42 178.3 147 59.2
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 4.0e-42 176.8 147 59.2
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 5.2e-42 176.4 157 59.2
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 5.2e-42 176.4 148 61.5
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 6.8e-42 176.0 147 59.2
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 8.9e-42 175.6 149 59.1
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 1.2e-41 175.3 147 57.8
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 1.2e-41 175.3 147 59.2
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 1.5e-41 174.9 147 57.1
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 2.0e-41 174.5 147 61.9
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 2.6e-41 174.1 149 57.0
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 2.6e-41 174.1 152 56.6
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 9.9e-41 172.2 147 58.5
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 1.4e-39 168.3 178 50.6
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 5.4e-39 166.4 149 51.7
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 3.0e-37 160.6 149 51.7
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 4.3e-36 156.8 148 55.4
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 2.6e-33 147.5 189 44.4
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 7.6e-33 146.0 168 48.2
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 7.6e-33 146.0 131 53.4
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 8.4e-32 142.5 147 49.7
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 3.2e-31 140.6 157 52.2
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.7e-29 134.8 110 60.9
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 6.6e-29 132.9 153 43.8
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 1.1e-26 125.6 147 45.6
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 1.1e-26 125.6 147 45.6
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 2.6e-25 120.9 153 38.6
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.8e-24 117.1 210 39.0
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 1.1e-23 115.5 151 39.7
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 2.7e-22 110.9 151 42.4
MELO3C034995.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.7e-21 106.3 187 38.5
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 6.7e-13 79.7 52 69.2
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 3.3e-12 77.4 146 31.5
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.1e-11 74.7 57 59.6
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.8e-11 74.3 66 56.1
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 7.6e-09 66.2 146 28.1
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 2.9e-08 64.3 152 28.3
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 4.6e-06 57.0 150 27.3


User provided reference genes

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