Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 3.8e-42 174.5 91 100.0
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.9e-25 119.0 76 85.5
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 1.2e-24 116.3 76 82.9
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 3.9e-23 111.3 76 78.9
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 6.3e-21 104.0 76 73.7
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 1.4e-15 86.3 77 62.3
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 3.9e-15 84.7 78 60.3
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 3.9e-15 84.7 78 60.3
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 6.7e-15 84.0 78 60.3
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 6.7e-15 84.0 78 60.3
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 6.7e-15 84.0 77 63.6
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.5e-14 82.8 78 60.3
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 3.3e-14 81.6 78 59.0
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 7.4e-14 80.5 76 59.2
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 9.7e-14 80.1 77 61.0
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 9.7e-14 80.1 77 58.4
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 1.7e-13 79.3 77 58.4
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 1.7e-13 79.3 77 59.7
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 1.7e-13 79.3 79 57.0
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 1.7e-13 79.3 79 57.0
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 2.8e-13 78.6 77 57.1
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 3.7e-13 78.2 77 58.4
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 4.8e-13 77.8 76 57.9
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 4.8e-13 77.8 77 58.4
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 4.8e-13 77.8 78 55.1
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 6.3e-13 77.4 74 56.8
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 6.3e-13 77.4 79 57.0
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 6.3e-13 77.4 77 55.8
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 6.3e-13 77.4 77 58.4
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 8.2e-13 77.0 77 58.4
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 8.2e-13 77.0 77 55.8
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 2.4e-12 75.5 77 55.8
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 3.1e-12 75.1 78 55.1
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 3.1e-12 75.1 80 52.5
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 4.1e-12 74.7 77 54.5
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 4.1e-12 74.7 77 54.5
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 5.3e-12 74.3 80 50.0
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 5.3e-12 74.3 80 50.0
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 5.3e-12 74.3 79 53.2
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 5.3e-12 74.3 79 53.2
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 5.3e-12 74.3 73 58.9
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 6.9e-12 73.9 77 55.8
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 6.9e-12 73.9 79 51.9
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 6.9e-12 73.9 79 51.9
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 9.1e-12 73.6 77 54.5
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 1.2e-11 73.2 78 50.0
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 1.5e-11 72.8 76 53.9
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.5e-11 72.8 76 53.9
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.5e-11 72.8 76 53.9
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 2.0e-11 72.4 78 51.3
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 2.0e-11 72.4 77 55.8
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 2.0e-11 72.4 77 55.8
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 2.6e-11 72.0 74 56.8
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 2.6e-11 72.0 74 56.8
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 2.6e-11 72.0 74 56.8
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 3.4e-11 71.6 77 55.8
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 3.4e-11 71.6 76 52.6
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 3.4e-11 71.6 82 48.8
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 4.5e-11 71.2 77 54.5
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 4.5e-11 71.2 80 50.0
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 5.9e-11 70.9 77 51.9
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 5.9e-11 70.9 80 48.8
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 5.9e-11 70.9 80 48.8
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 5.9e-11 70.9 80 48.8
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 5.9e-11 70.9 78 55.1
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 5.9e-11 70.9 76 52.6
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 7.7e-11 70.5 79 49.4
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 1.0e-10 70.1 77 53.2
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 1.7e-10 69.3 80 50.0
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 1.7e-10 69.3 74 52.7
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 2.9e-10 68.6 76 52.6
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 2.9e-10 68.6 79 48.1
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 5.0e-10 67.8 77 51.9
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 5.0e-10 67.8 75 53.3
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 5.0e-10 67.8 79 48.1
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 5.0e-10 67.8 79 49.4
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 6.5e-10 67.4 77 51.9
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 8.5e-10 67.0 73 54.8
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 8.5e-10 67.0 73 54.8
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 2.5e-09 65.5 79 50.6
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 3.2e-09 65.1 76 51.3
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 4.2e-09 64.7 77 48.1
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 4.2e-09 64.7 77 48.1
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 4.2e-09 64.7 77 48.1
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 4.2e-09 64.7 76 52.6
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 5.5e-09 64.3 73 50.7
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 5.5e-09 64.3 73 50.7
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 7.2e-09 63.9 76 51.3
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 9.4e-09 63.5 76 48.7
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 9.4e-09 63.5 76 48.7
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 1.2e-08 63.2 79 45.6
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 1.2e-08 63.2 76 48.7
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 1.2e-08 63.2 77 51.9
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 1.6e-08 62.8 76 47.4
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 1.6e-08 62.8 76 47.4
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 2.1e-08 62.4 73 52.1
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 2.7e-08 62.0 73 49.3
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 2.7e-08 62.0 73 49.3
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 2.7e-08 62.0 80 50.0
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 6.1e-08 60.8 73 47.9
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 6.1e-08 60.8 73 47.9
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 1.0e-07 60.1 58 56.9
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 1.8e-07 59.3 72 50.0
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 1.8e-07 59.3 74 48.6
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 1.8e-07 59.3 101 42.6
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 2.0e-06 55.8 56 57.1


User provided reference genes

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