Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032469.2 Cucumis melo HOM05D000030 ORTHO05D168920 2.2e-35 151.8 75 100.0
ClCG11G017200 Citrullus lanatus HOM05D000030 ORTHO05D000009 2.4e-26 121.7 74 77.0
MELO3C032351.2 Cucumis melo HOM05D000030 ORTHO05D000009 4.5e-25 117.5 72 80.6
CsaV3_4G032860 Cucumis sativus L. HOM05D000030 ORTHO05D000009 4.5e-25 117.5 74 78.4
Sed0011120 Sechium edule HOM05D000030 ORTHO05D000009 1.9e-23 112.1 74 73.0
CiPaw.12G110900 Carya illinoinensis HOM05D000030 ORTHO05D000009 4.1e-18 94.4 74 60.8
Manes.03G079200 Manihot esculenta HOM05D000030 ORTHO05D000009 1.3e-16 89.4 74 55.4
Potri.001G383800 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.9e-16 88.2 74 55.4
Potri.011G104000 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.9e-16 88.2 74 55.4
MD11G1270200 Malus domestica HOM05D000030 ORTHO05D000009 3.8e-16 87.8 74 54.1
Prupe.4G156200 Prunus persica HOM05D000030 ORTHO05D000009 8.5e-16 86.7 74 52.7
QL08p024128 Quercus lobata HOM05D000030 ORTHO05D000009 3.2e-15 84.7 74 51.4
Atru.chr2.1941 Acer truncatum HOM05D000030 ORTHO05D000009 1.2e-14 82.8 74 52.7
Atru.chr2.1965 Acer truncatum HOM05D000030 ORTHO05D000009 1.2e-14 82.8 74 52.7
TWI38G0584 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 1.2e-14 82.8 74 50.0
Sabra11G0076800 Salix brachista HOM05D000030 ORTHO05D000009 1.6e-14 82.4 74 51.4
Sabra11G0081700 Salix brachista HOM05D000030 ORTHO05D000009 1.6e-14 82.4 74 51.4
Sabra16G0252800 Salix brachista HOM05D000030 ORTHO05D000009 2.1e-14 82.0 74 51.4
CSS0048871 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 8.0e-14 80.1 72 52.8
Duzib187G0478 Durio zibethinus HOM05D000030 ORTHO05D000009 8.0e-14 80.1 74 54.1
Thecc.07G134000 Theobroma cacao HOM05D000030 ORTHO05D000009 1.8e-13 79.0 74 51.4
CSS0008015 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 2.3e-13 78.6 72 52.8
FvH4_3g17721 Fragaria vesca HOM05D000030 ORTHO05D000009 4.0e-13 77.8 74 47.3
RcHm_v2.0_Chr5g0029491 Rosa chinensis HOM05D000030 ORTHO05D000009 4.0e-13 77.8 74 48.6
Gohir.D11G302903 Gossypium hirsutum HOM05D000030 ORTHO05D000009 5.2e-13 77.4 74 51.4
Gorai.007G331900 Gossypium raimondii HOM05D000030 ORTHO05D000009 5.2e-13 77.4 74 51.4
Gohir.A11G289741 Gossypium hirsutum HOM05D000030 ORTHO05D000009 6.8e-13 77.0 74 51.4
TAR626G0672 Trochodendron aralioides HOM05D000030 ORTHO05D000009 2.0e-12 75.5 73 52.1
C01p49650 Brassica napus HOM05D000030 ORTHO05D000009 4.4e-12 74.3 74 47.3
BolC1t04921H Brassica oleracea HOM05D000030 ORTHO05D000009 4.4e-12 74.3 74 47.3
Duzib213G0128 Durio zibethinus HOM05D000030 ORTHO05D000009 4.4e-12 74.3 74 47.3
Hma1.2p1_0050F.1_g028760 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 4.4e-12 74.3 74 48.6
AL3G27110 Arabidopsis lyrata HOM05D000030 ORTHO05D000009 5.7e-12 73.9 74 48.6
Thhalv10020233m.g Eutrema salsugineum HOM05D000030 ORTHO05D000009 5.7e-12 73.9 74 45.9
CiPaw.11G156100 Carya illinoinensis HOM05D000030 ORTHO05D000009 7.5e-12 73.6 70 52.9
Sp3g13020 Schrenkiella parvula HOM05D000030 ORTHO05D000009 7.5e-12 73.6 74 45.9
GSVIVG01014094001 Vitis vinifera HOM05D000030 ORTHO05D000009 7.5e-12 73.6 69 49.3
A01p39030 Brassica napus HOM05D000030 ORTHO05D000009 9.7e-12 73.2 74 45.9
Rhsim06G0212000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.3e-11 72.8 69 44.9
THA.LOC104810425 Tarenaya hassleriana HOM05D000030 ORTHO05D000009 1.3e-11 72.8 74 45.9
Aa31LG8G2010 Aethionema arabicum HOM05D000030 ORTHO05D000009 2.2e-11 72.0 73 45.2
CARHR089740 Cardamine hirsuta HOM05D000030 ORTHO05D000009 2.2e-11 72.0 74 45.9
Cc05_g10690 Coffea canephora HOM05D000030 ORTHO05D000009 2.2e-11 72.0 74 45.9
TWI38G0598 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 2.8e-11 71.6 74 44.6
BraA01t03950Z Brassica rapa HOM05D000030 ORTHO05D000009 3.7e-11 71.2 74 44.6
Glyma.09G099400 Glycine max HOM05D000030 ORTHO05D000009 3.7e-11 71.2 73 47.9
Glyma.15G209800 Glycine max HOM05D000030 ORTHO05D000009 3.7e-11 71.2 73 47.9
Lj3g0012543 Lotus japonicus HOM05D000030 ORTHO05D000009 4.8e-11 70.9 73 46.6
Lj3g0013079 Lotus japonicus HOM05D000030 ORTHO05D000009 4.8e-11 70.9 73 46.6
VMungo1127G1598 Vigna mungo HOM05D000030 ORTHO05D000009 4.8e-11 70.9 73 43.8
MSTRG.12859 Avicennia marina HOM05D000030 ORTHO05D000009 6.3e-11 70.5 74 43.2
AUR62019656 Chenopodium quinoa HOM05D000030 ORTHO05D000009 6.3e-11 70.5 74 44.6
Lalb_Chr25g0285641 Lupinus albus HOM05D000030 ORTHO05D000009 6.3e-11 70.5 74 44.6
Oeu050678.1 Olea europaea HOM05D000030 ORTHO05D000009 6.3e-11 70.5 74 45.9
CSS0043238 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 1.1e-10 69.7 73 45.2
AUR62013958 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.1e-10 69.7 74 44.6
Hma1.2p1_0325F.1_g125840 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 1.1e-10 69.7 70 44.3
Lalb_Chr01g0016351 Lupinus albus HOM05D000030 ORTHO05D000009 1.1e-10 69.7 74 45.9
Gorai.004G271300 Gossypium raimondii HOM05D000030 ORTHO05D000009 1.4e-10 69.3 74 45.9
ECA236G4465 Erigeron canadensis HOM05D000030 ORTHO05D000009 1.8e-10 68.9 70 41.4
Solyc10g007470.4 Solanum lycopersicum HOM05D000030 ORTHO05D000009 1.8e-10 68.9 74 43.2
Sopen10g003410 Solanum pennellii HOM05D000030 ORTHO05D000009 1.8e-10 68.9 74 43.2
PGSC0003DMG400021296 Solanum tuberosum HOM05D000030 ORTHO05D000009 1.8e-10 68.9 74 43.2
CSS0012840 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 2.4e-10 68.6 73 45.2
CANSAT56G0339 Cannabis sativa HOM05D000030 ORTHO05D000009 2.4e-10 68.6 70 48.6
Ah.07g205350 Amaranthus hybridus HOM05D000030 ORTHO05D000009 3.1e-10 68.2 74 41.9
Hund10414 Selenicereus undatus HOM05D000030 ORTHO05D000009 3.1e-10 68.2 70 42.9
Gohir.A08G234120 Gossypium hirsutum HOM05D000030 ORTHO05D000009 5.3e-10 67.4 74 44.6
COL.COLO4_33723 Corchorus olitorius HOM05D000030 ORTHO05D000009 9.1e-10 66.6 73 41.1
Oeu010033.1 Olea europaea HOM05D000030 ORTHO05D000009 9.1e-10 66.6 70 44.3
Ca_25092_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 1.2e-09 66.2 73 41.1
Nn3g20984 Nelumbo nucifera HOM05D000030 ORTHO05D000009 1.2e-09 66.2 73 45.2
TPR.G18201 Trifolium pratense HOM05D000030 ORTHO05D000009 1.2e-09 66.2 73 43.8
CSS0014032 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 1.6e-09 65.9 73 41.1
CSS0042283 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 1.6e-09 65.9 73 41.1
Dinv12705 Davidia involucrata HOM05D000030 ORTHO05D000009 1.6e-09 65.9 73 42.5
MD09G1155300 Malus domestica HOM05D000030 ORTHO05D000009 1.6e-09 65.9 73 41.1
PGR083G0919 Punica granatum HOM05D000030 ORTHO05D000009 2.0e-09 65.5 72 43.1
EL10Ac4g08420 Beta vulgaris HOM05D000030 ORTHO05D000009 2.7e-09 65.1 74 41.9
Nn6g34411 Nelumbo nucifera HOM05D000030 ORTHO05D000009 2.7e-09 65.1 70 44.3
Nitab4.5_0000383g0050 Nicotiana tabacum HOM05D000030 ORTHO05D000009 4.5e-09 64.3 74 39.2
Atru.chr10.1789 Acer truncatum HOM05D000030 ORTHO05D000009 7.7e-09 63.5 73 43.8
Manes.01G128600 Manihot esculenta HOM05D000030 ORTHO05D000009 1.7e-08 62.4 73 43.8
Prupe.3G170500 Prunus persica HOM05D000030 ORTHO05D000009 1.7e-08 62.4 73 39.7
RcHm_v2.0_Chr2g0151021 Rosa chinensis HOM05D000030 ORTHO05D000009 1.7e-08 62.4 69 40.6
Rhsim06G0120900 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.8e-08 61.2 73 43.8
CSS0000026 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 5.0e-08 60.8 73 42.5
Thecc.01G160100 Theobroma cacao HOM05D000030 ORTHO05D000009 5.0e-08 60.8 73 39.7
FvH4_6g37871 Fragaria vesca HOM05D000030 ORTHO05D000009 6.5e-08 60.5 66 40.9
Gohir.A05G377850 Gossypium hirsutum HOM05D000030 ORTHO05D000009 8.5e-08 60.1 73 38.4
Cc05_g09240 Coffea canephora HOM05D000030 ORTHO05D000009 1.1e-07 59.7 73 41.1
Lj3C1010G18 Lonicera japonica HOM05D000030 ORTHO05D000009 1.1e-07 59.7 68 41.2
ClCG09G022320 Citrullus lanatus HOM05D000030 ORTHO05D000009 1.9e-07 58.9 70 41.4
HanXRQChr11g0331181 Helianthus annuus HOM05D000030 ORTHO05D000009 1.9e-07 58.9 73 34.2
Migut.H02025 Erythranthe guttata HOM05D000030 ORTHO05D000009 2.5e-07 58.5 74 35.1
Gorai.012G042700 Gossypium raimondii HOM05D000030 ORTHO05D000009 3.2e-07 58.2 73 37.0
CiPaw.03G188400 Carya illinoinensis HOM05D000030 ORTHO05D000009 4.2e-07 57.8 73 37.0
Gohir.D04G037850 Gossypium hirsutum HOM05D000030 ORTHO05D000009 4.2e-07 57.8 73 37.0
MD17G1141400 Malus domestica HOM05D000030 ORTHO05D000009 4.2e-07 57.8 73 38.4
Oeu041608.1 Olea europaea HOM05D000030 ORTHO05D000009 4.2e-07 57.8 73 39.7
Oeu041609.1 Olea europaea HOM05D000030 ORTHO05D000009 4.2e-07 57.8 73 39.7
TWI59G0458 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 4.2e-07 57.8 73 39.7
Duzib147G0286 Durio zibethinus HOM05D000030 ORTHO05D000009 5.5e-07 57.4 73 35.6
QL08p043779 Quercus lobata HOM05D000030 ORTHO05D000009 5.5e-07 57.4 70 37.1
MELO3C031104.2 Cucumis melo HOM05D000030 ORTHO05D000009 9.4e-07 56.6 73 38.4
Lj6g0001535 Lotus japonicus HOM05D000030 ORTHO05D000009 9.4e-07 56.6 72 40.3
Lalb_Chr10g0106771 Lupinus albus HOM05D000030 ORTHO05D000009 9.4e-07 56.6 73 35.6
CsaV3_6G037990 Cucumis sativus L. HOM05D000030 ORTHO05D000009 1.2e-06 56.2 73 38.4
ECA246G4092 Erigeron canadensis HOM05D000030 ORTHO05D000009 1.2e-06 56.2 70 40.0
Duzib187G0027 Durio zibethinus HOM05D000030 ORTHO05D000009 2.1e-06 55.5 73 35.6
Migut.L01144 Erythranthe guttata HOM05D000030 ORTHO05D000009 2.1e-06 55.5 73 34.2
Aqoxy4G00194 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 3.6e-06 54.7 72 40.3
Ca_14610_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 3.6e-06 54.7 73 37.0
Lalb_Chr04g0248691 Lupinus albus HOM05D000030 ORTHO05D000009 3.6e-06 54.7 73 35.6
TPR.G16773 Trifolium pratense HOM05D000030 ORTHO05D000009 4.7e-06 54.3 73 37.0
CiPaw.03G248300 Carya illinoinensis HOM05D000030 ORTHO05D000009 6.1e-06 53.9 70 37.1
Ciclev10007308m.g Citrus clementina HOM05D000030 ORTHO05D000009 6.1e-06 53.9 70 37.1
Manes.14G115400 Manihot esculenta HOM05D000030 ORTHO05D000009 6.1e-06 53.9 70 38.6
MSTRG.6760 Avicennia marina HOM05D000030 ORTHO05D000009 8.0e-06 53.5 61 39.3
CANSAT78G1819 Cannabis sativa HOM05D000030 ORTHO05D000009 8.0e-06 53.5 73 35.6


User provided reference genes

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